Evolution of Genome Size and Complexity in Pinus

BACKGROUND: Genome evolution in the gymnosperm lineage of seed plants has given rise to many of the most complex and largest plant genomes, however the elements involved are poorly understood. METHODOLOGY/PRINCIPAL FINDINGS: Gymny is a previously undescribed retrotransposon family in Pinus that is related to Athila elements in Arabidopsis. Gymny elements are dispersed throughout the modern Pinus genome and occupy a physical space at least the size of the Arabidopsis thaliana genome. In contrast to previously described retroelements in Pinus, the Gymny family was amplified or introduced after the divergence of pine and spruce (Picea). If retrotransposon expansions are responsible for genome size differences within the Pinaceae, as they are in angiosperms, then they have yet to be identified. In contrast, molecular divergence of Gymny retrotransposons together with other families of retrotransposons can account for the large genome complexity of pines along with protein-coding genic DNA, as revealed by massively parallel DNA sequence analysis of Cot fractionated genomic DNA. CONCLUSIONS/SIGNIFICANCE: Most of the enormous genome complexity of pines can be explained by divergence of retrotransposons, however the elements responsible for genome size variation are yet to be identified. Genomic resources for Pinus including those reported here should assist in further defining whether and how the roles of retrotransposons differ in the evolution of angiosperm and gymnosperm genomes

Global contribution of echinoderms to the marine carbon cycle: a re-assessment of the oceanic CaCO3 budget and the benthic compartments

The contribution of carbonate-producing benthic organisms to the global marine carbon budget has been overlooked, the prevailing view being that calcium carbonate (CaCO3) is predominantly produced by marine plankton. Here, we provide the first estimation of the global contribution of echinoderms to the marine carbon cycle, based on organism-level measurements from species of the five echinoderm classes. Echinoderms global CaCO3 contribution amounts to ~0.861 Pg CaCO3 yr-1 (0.102 Pg C yr-1 of inorganic carbon) as a production rate, and ~2.11 Pg CaCO3 (0.25 Pg C of inorganic carbon) as a standing stock globally. Echinoderm inorganic carbon production (0.102 Pg C yr-1) is less than the global pelagic production (0.4-1.8 Pg C yr-1), and similar to the estimates for carbonate shelves globally (0.02-0.12 Pg C yr-1). Echinoderm CaCO3 production per unit area, is ~27.01 g CaCO3 m-2 yr-1 (3.24 g C m-2 yr-1 as inorganic carbon) on a global scale for all areas, with a standing stock of ~63.34 g CaCO3 m-2 (7.60 g C m-2 as inorganic carbon), and ~7.97 g C m-2 as organic carbon. The shelf production is 77.91 g CaCO3 m-2 yr-1 (9.35 g C m-2 yr-1 as inorganic carbon) in contrast to 2.05 g CaCO3 m-2 yr-1 (0.24 g C m-2 yr-1 as inorganic carbon) for the slope on a global scale. The biogeography of the CaCO3 standing stocks of echinoderms showed strong latitudinal variability. Roughly 80% of the global CaCO3 production from echinoderms occurs between 0 and 800 meters. The shelf and upper slope contribute the most. We provide a global distribution of echinoderm populations in the context of global calcite saturation horizons, since undersaturated waters with respect to mineral phases are surfacing. This shallowing is a direct consequence of ocean acidification, and in some places it may reach the shelf and upper slope permanently. These organism-level data contribute substantially to the assessment of global carbonate inventories, which at present are poorly estimated. Additionally, it is desirable to include these benthic compartments in coupled global biogeochemical models representing the "biological pump", since at present all efforts have focused on pelagic processes, dominated by coccolithophores.<br/

Monographs of invasive plants in Europe: Carpobrotus

This report synthesizes all aspects of the taxonomy, distribution, history of introduction and spread, ecological constrains (including preferred climate, substratum and habitats), responses to biotic and abiotic factors, biology (including phenology, vegetative and reproductive biology), economic importance and human uses, ecological impacts, legislation and management of Carpobrotus N.E.Br. (Aizoaceae), a prominent invasive plant in Europe. Carpobrotus species are mat-forming trailing succulent perennial herbs native from South Africa, introduced in Europe for ornamental and soil stabilization purposes since the beginning of the seventeenth century, now widely naturalized on coastal habitats of southern and western Europe. C. acinaciformis and C. edulis are the main species recognized outside South Africa, together with their hybrids and potential hybrid swarms. Identification conflicts both in the native and invaded areas raise doubts on the taxonomy of these taxa, but hybridization processes may boost adaptive changes in the invaded range. The release of Carpobrotus in natural environments and protected areas is prohibited in several European countries, but this taxon is not included in the list of invasive species of Union concern. Carpobrotus is a pioneer of disturbed sites and coastal areas including cliffs and sand dune systems, due to its tolerance to stress factors such as salinity, drought and excess of light. Carpobrotus invasion ultimately affects patterns of native species diversity. Moreover, it has been recognized as a major driver of soil conditions shifts and soil geochemical processes disruptions, representing a serious threat for coastal habitats. Management plans for Carpobrotus must consider its high plasticity for morphological and ecophysiological traits, which may probably explain its tolerance to a wide range of ecological conditions. Its flexible mating systems, which represent an optimal strategy to facilitate local adaptation and habitat colonization, include ability to produce apomictic seeds, self- and cross-pollination, and an intense vegetative clonality. In addition, Carpobrotus produces a large seed bank with a moderate short-term persistence, and fruits are effectively dispersed by mammals. The most efficient control methods are physical removal and herbicide application on leaves, whereas integration of biological control with other conventional management methods are likely to be most effective. A long-term monitoring of control actions and restoration of soil conditions are needed to prevent recovering from clonal parts, seed bank or mammal faeces as well as potential new invasions by other opportunistic species

Decolonising imperial heroes:Britain and France

The heroes of the British and French empires stood at the vanguard of the vibrant cultures of imperialism that emerged in Europe in the second half of the nineteenth century. Yet imperial heroes did not disappear after 1945 as British and French flags were lowered around the world. On the contrary, their reputations underwent a variety of metamorphoses in both the former metropoles and the former colonies. The introduction to this special issue of the Journal of Imperial and Commonwealth History presents an overview of the changing history and historiography of imperial heroes half a century after the end of empire