Genome-wide identification, characterization and expression profiling of the ubiquitin-proteasome genes in biomphalaria glabrata

Biomphalaria glabrata is the major species used for the study of schistosomiasis-related parasite-host relationships, and understanding its gene regulation may aid in this endeavor. The ubiquitin-proteasome system (UPS) performs post-translational regulation in order to maintain cellular protein homeostasis and is related to several mechanisms, including immune responses. The aims of this work were to identify and characterize the putative genes and proteins involved in UPS using bioinformatic tools and also their expression on different tissues of B. glabrata. The putative genes and proteins of UPS in B. glabrata were predicted using BLASTp and as queries reference proteins from model organism. We characterized these putative proteins using PFAM and CDD software describing the conserved domains and active sites. The phylogenetic analysis was performed using ClustalX2 and MEGA5.2. Expression evaluation was performed from 12 snail tissues using RPKM. 119 sequences involved in the UPS in B. glabrata were identified, which 86 have been related to the ubiquitination pathway and 33 to proteasome. In addition, the conserved domains found were associated with the ubiquitin family, UQ_con, HECT, U-box and proteasome. The main active sites were lysine and cysteine residues. Lysines are responsible and the starting point for the formation of polyubiquitin chains, while the cysteine residues of the enzymes are responsible for binding to ubiquitin. The phylogenetic analysis showed an organized distribution between the organisms and the clades of the sequences, corresponding to the tree of life of the animals, for all groups of sequences analyzed. The ubiquitin sequence was the only one with a high expression profile found in all libraries, inferring its wide range of performance. Our results show the presence, conservation and expression profile of the UPS in this mollusk, providing a basis and new knowledge for other studies involving this system. Due to the importance of the UPS and B. glabrata, this work may influence the search for new methodologies for the control of schistosomiasis114CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO - CNPQ479890/2013-

Efeito da inclusão da torta de macaúba na população de protozoários do rúmen de vacas leiteiras

Avaliaram-se os efeitos da inclusão da torta de macaúba (TM) na dieta sobre a concentração e o perfil da população de protozoários ciliados do rúmen. Foram utilizadas oito vacas Holandesas, dispostas em dois quadrados latinos 4x4 e alimentadas com diferentes níveis de inclusão da TM (0, 100, 200 e 300g kg-1 de matéria seca na dieta total). Para quantificação e identificação dos protozoários, amostras de 1mL do líquido ruminal de cada animal foram diluídas em 9mL de solução de formaldeído a 10%. Após diluições decimais sucessivas em solução salina, os protozoários foram quantificados em câmara de Sedgewick. A identificação foi realizada sob a luz da microscopia óptica, utilizando-se a objetiva de 40x para caracterizar o mínimo de 100 indivíduos por amostra. As concentrações de protozoários pequenos (P&lt;0,01), médios (P=0,05), grandes (P=0,01) e o número total (P&lt;0,01) apresentaram comportamento linear decrescente com o aumento dos níveis de inclusão da TM nas dietas. Foram encontradas características morfológicas típicas de 16 gêneros de protozoários ciliados, sendo os gêneros Entodinium e Eodinium os mais frequentes no líquido ruminal dos animais avaliados. O perfil da população de protozoários ciliados sofreu pequenas alterações com a inclusão da TM, sendo observada alteração na participação percentual dos gêneros Charonina (P = 0,03) e Polyplastron (P&lt;0,01). A utilização da TM na dieta de bovinos promove redução na concentração e modificação no perfil da população de protozoários ciliados do rúmen.</jats:p

Elephant grass silage inoculated with cellulolytic fungi isolated from rumen

ABSTRACT The objective was to evaluate the inoculation with Aspergillus terreus and/or Trichoderma longibrachiatum on fermentation, chemical and microbiological composition of elephant grass ‘Cameroon’ silage (Cenchrus purpureus). Treatments were A. terreus at 105 colony forming units (CFU)/g (AT15), T. longibrachiatum at 105 CFU/g (TL20), a mixture of both at 105 CFU/g (MIX), and a control group without inoculation (CONTR). The design was completely randomized with seven replicates. The MIX silage was most stable, while CONTR, AT15, and TL20, had lower dry matter losses. There was no effect of inoculation in the chemical composition of silages. Only MIX silage (4.40) had pH above the minimum of 4.2 for humid grass silage and above the control (4.05). Bacteria from Diplococcus genus was identified at the opening of TL20 and CONTR silages. After air exposure, the population of rods, Lactobacillus, and total lactic acid bacteria was higher in theTL20 and MIX. The inclusion of a T. longibrachiatum and A. terreus mixture increases dry mater loss and silage pH. T. longibrachiatum was more efficient in maintaining populations of total lactic acid bacteria after opening; therefore, this strain has potential as an additive for elephant grass ‘Cameroon’ silage

Multiscale characterization of an extensive stromatolites field: a new correlation horizon for the Crato Member, Araripe Basin, Brazil

There is wide recognition of lacustrine sediments as excellent archives of a basin’s depositional history due to their high sensitivity to environmental changes. Among them, microbial limestones are one of the most valuable tools for paleoenvironmental reconstruction, because the biological agents responsible for their genesis tend to respond to short-lived variations of the depositional setting creating specific precipitation patterns. We here document and investigate the sedimentary features of a specific sedimentary layer, remarkable by the extraordinary lateral continuity of its textural attributes over kilometer distances. This marker horizon occurs among the first carbonate layers of the Crato Member (Aptian, Araripe Basin, NE Brazil), commonly assigned a paleolacustrine system. We build on a multiscale comparative analysis (mesoscale, microscale, and chemical) to outline the main processes and paleoenvironmental settings that prompted this interval’s widespread and laterally nearly uniform deposition. A lamination pattern identified in different well cores was scrutinized and compared, and shows striking lateral continuity attesting to autochthonous biologically induced mineralization as the primary mechanism of the formation of the microbialites. Compositional and stable-isotope results also show similar trends throughout the well cores, where minor differences represent the influence of local processes. The studied interval encompasses the relatively swift transition of organic shales rich in ostracod valves to planar stromatolites, where both developed in the anoxic benthonic zone of a freshwater lake. The precipitation of the overlying thinly laminated limestones is related to a change in the carbonate genetic mechanism as a response to a more stable lacustrine stratification. The widespread formation of microbialites preserving an almost identical textural pattern must be related to a regional event, constituting a rare example of a preserved ancient biostrome. Moreover, the investigation of this sedimentary layer can further contribute to determining the roles of different biotic and abiotic processes in microbialite precipitation over large areas

The role of ear mites of the genus Raillietia (Acari: Raillietiidae) in otitis of domestic ruminants

This paper presents a hypothesis on the involvement of species of the genus Raillietia Trouessart in the pathology of parasitic otitis in domestic ruminants. The chelicerae and claws of the tarsi are structures that contribute significantly towards producing primary lesions. The movable digits of the chelicerae accidentally injure the epithelium that lines the ear canal, while the claws of the tarsi perforate the epithelium, allowing the mites to affix themselves while feeding. The lesions in the epithelium caused by the chelicerae and the claws favor multiplication of the bacteria that inhabit the ear canal, resulting in typical cases of otitis

Composição química e produtividade dos principais componentes do óleo essencial de Baccharis dracunculifolia DC. em função da adubação orgânica

Objetivou-se avaliar a composição química e produtividade dos principais componentes do óleo essencial de Baccharis dracunculifolia DC. em função de doses de composto orgânico (0, 10, 20, 30, 40 e 50 t ha-1). Foi realizada uma colheita, aos 150 dias após o transplante das mudas. O óleo essencial, da massa seca útil da parte aérea, foi extraído por hidrodestilação e analisado em cromatógrafo a gás acoplado a espectrômetro de massas (Shimadzu, QP-5000). A identificação dos constituintes químicos foi realizada através da análise comparativa dos espectros de massas das substâncias com o banco de dados do sistema CG-EM (Nist 62.lib), literatura e índice de retenção. Os resultados foram submetidos à análise de variância pelo teste F, às médias obtidas foram submetidas à análise de regressão e o teste Tukey para o efeito das doses de composto orgânico. Os três componentes sesquiterpênicos, E-nerolidol, espatulenol e óxido de cariofileno, perfazem 58,44% da média relativa da composição química do óleo essencial de B. dracunculifolia, composto pela presença de 28 substâncias. Na produtividade dos componentes &#947;-muroleno, valenceno, &#948;-cadineno e E-nerolidol as dosagens estudadas influenciaram as plantas, que na dosagem 30 t ha-1 obtiveram os melhores resultados. Se o objetivo no cultivo de B. dracunculifolia for o componente espatulenol as dosagens 30 e 40 t ha-1 obtiveram os melhores resultados. Para a produtividade do componente óxido de cariofileno as dosagens estudadas influenciaram as plantas, que na dosagem 40 t ha-1 obtiveram os melhores resultados.The objective was to evaluate the chemical composition and productivity of the main components of the essential oil of Baccharis dracunculifolia DC. due to organic compound (0, 10, 20, 30, 40 and 50 t ha-1). We performed a harvest, 150 days after transplanting. The essential oil of the dry mass useful in the aerial part was extracted by hydrodistillation and analyzed in gas chromatograph coupled to a mass spectrometer (Shimadzu, QP-5000). The identification of chemical constituents was performed by comparative analysis of mass spectra of substances with the database of the GC-MS (Nist 62.lib), literature and retention rates. The results were subjected to analysis of variance by F test, the averages obtained were subjected to regression analysis and Tukey test for the effect of doses of organic compound. The three components sesquiterpene, E-nerolidol, espatulenol and caryophyllene oxide, account for 58.44% of the average for the chemical composition of essential oil of B. dracunculifolia, composed by the presence of 28 substances. Productivity of components &#947;-murolene, valencene, &#948;-cadinene and E-nerolidol was influenced by doses, which in dose 30 t ha-1 obtained the best results. If the goal in the cultivation of B. dracunculifolia is the component espatulenol dosages 30 and 40 t ha-1 obtained the best results. To the productivity of caryophyllene oxide doses studied influenced the plants, which in dose 40 t ha-1 obtained the best results