Transcriptomic Profiles of Monocyte-Derived Macrophages in Response to Escherichia coli is Associated with the Host Genetics.

Reactive Nitrogen Species (RNS) are a group of bactericidal molecules produced by macrophages in response to pathogens in a process called oxidative burst. Nitric oxide (NO-) is a member of RNS produced from arginine by inducible Nitric Oxide Synthase (iNOS) enzyme. The activity of iNOS and production of NO- by macrophages following stimulation is one of the indicators of macrophage polarization towards M1/proinflammatory. Production of NO- by bovine monocyte-derived macrophage (MDM) and mouse peritoneal macrophages has been shown to be strongly associated with host genetic with the heritability of 0.776 in bovine MDM and 0.8 in mouse peritoneal macrophages. However, the mechanism of genetic regulation of macrophage response has remained less explored. In the current study, the transcriptome of bovine MDMs was compared between two extreme phenotypes that had been classified as high and low responder based on NO- production. The results showed that 179 and 392 genes were differentially expressed (DE) between high and low responder groups at 3 and 18 hours after exposure to Escherichia coli, respectively. A set of 11 Transcription Factors (TFs) (STAT1, IRF7, SPI1, STAT4, IRF1, HIF1A, FOXO3, REL, NFAT5, HIC1, and IRF4) at 3 hours and a set of 13 TFs (STAT1, IRF1, HIF1A, STAT4, ATF4, TP63, EGR1, CDKN2A, RBL1, E2F1, PRDM1, GATA3, and IRF4) at 18 hours after exposure to E. coli were identified to be differentially regulated between the high and low responder phenotypes. These TFs were found to be divided into two clusters of inflammatory- and hypoxia-related TFs. Functional analysis revealed that some key canonical pathways such as phagocytosis, chemotaxis, antigen presentation, and cell-to-cell signalling are enriched among the over-expressed genes by high responder phenotype. Based on the results of this study, it was inferred that the functional characteristics of bovine MDMs are associated with NO-based classification. Since NO- production is strongly associated with host genetics, this study for the first time shows the distinct proinflammatory profiles of macrophages are controlled by the natural genetic polymorphism in an outbred population. In addition, the results suggest that genetics can be considered as a new dimension in the current model of macrophage polarization which is currently described by the combination of stimulants, only

A census of ρ\rho Oph candidate members from Gaia DR2

The Ophiuchus cloud complex is one of the best laboratories to study the earlier stages of the stellar and protoplanetary disc evolution. The wealth of accurate astrometric measurements contained in the Gaia Data Release 2 can be used to update the census of Ophiuchus member candidates. We seek to find potential new members of Ophiuchus and identify those surrounded by a circumstellar disc. We constructed a control sample composed of 188 bona fide Ophiuchus members. Using this sample as a reference we applied three different density-based machine learning clustering algorithms (DBSCAN, OPTICS, and HDBSCAN) to a sample drawn from the Gaia catalogue centred on the Ophiuchus cloud. The clustering analysis was applied in the five astrometric dimensions defined by the three-dimensional Cartesian space and the proper motions in right ascension and declination. The three clustering algorithms systematically identify a similar set of candidate members in a main cluster with astrometric properties consistent with those of the control sample. The increased flexibility of the OPTICS and HDBSCAN algorithms enable these methods to identify a secondary cluster. We constructed a common sample containing 391 member candidates including 166 new objects, which have not yet been discussed in the literature. By combining the Gaia data with 2MASS and WISE photometry, we built the spectral energy distributions from 0.5 to 22\microm for a subset of 48 objects and found a total of 41 discs, including 11 Class II and 1 Class III new discs. Density-based clustering algorithms are a promising tool to identify candidate members of star forming regions in large astrometric databases. If confirmed, the candidate members discussed in this work would represent an increment of roughly 40% of the current census of Ophiuchus.Comment: A&A, Accepted. Abridged abstrac

Single-ion and exchange anisotropy effects and multiferroic behavior in high-symmetry tetramer single molecule magnets

We study single-ion and exchange anisotropy effects in equal-spin $s_1$ tetramer single molecule magnets exhibiting $T_d$, $D_{4h}$, $D_{2d}$, $C_{4h}$, $C_{4v}$, or $S_4$ ionic point group symmetry. We first write the group-invariant quadratic single-ion and symmetric anisotropic exchange Hamiltonians in the appropriate local coordinates. We then rewrite these local Hamiltonians in the molecular or laboratory representation, along with the Dzyaloshinskii-Moriay (DM) and isotropic Heisenberg, biquadratic, and three-center quartic Hamiltonians. Using our exact, compact forms for the single-ion spin matrix elements, we evaluate the eigenstate energies analytically to first order in the microscopic anisotropy interactions, corresponding to the strong exchange limit, and provide tables of simple formulas for the energies of the lowest four eigenstate manifolds of ferromagnetic (FM) and anitiferromagnetic (AFM) tetramers with arbitrary $s_1$. For AFM tetramers, we illustrate the first-order level-crossing inductions for $s_1=1/2,1,3/2$, and obtain a preliminary estimate of the microscopic parameters in a Ni$_4$ from a fit to magnetization data. Accurate analytic expressions for the thermodynamics, electron paramagnetic resonance absorption and inelastic neutron scattering cross-section are given, allowing for a determination of three of the microscopic anisotropy interactions from the second excited state manifold of FM tetramers. We also predict that tetramers with symmetries $S_4$ and $D_{2d}$ should exhibit both DM interactions and multiferroic states, and illustrate our predictions for $s_1=1/2, 1$.Comment: 30 pages, 14 figures, submitted to Phys. Rev.

Similarity in the difference: changes in community functional features along natural and anthropogenic stress gradients.

The effect of stressors on biodiversity can vary in relation to the degree to which biological communities have adapted over evolutionary time. We compared the responses of functional features of stream insect communities along chronic stress gradients with contrasting time persistence. Water salinity and land use intensification were used as examples of natural (long-term persistent) and anthropogenic (short-term persistent) stressors, respectively. A new trait-based approach was applied to quantify functional diversity components and functional redundancy within the same multidimensional space, using metrics at the taxon and community levels. We found similar functional responses along natural and anthropogenic stress gradients. In both cases, the mean taxon functional richness and functional similarity between taxa increased with stress, whereas community functional richness and functional redundancy decreased. Despite the differences in evolutionary persistence, both chronic stressors act as strong nonrandom environmental filters, producing convergent functional responses. These results can improve our ability to predict functional effects of novel stressors at ecological and evolutionary scales

Manejo da irrigação para o trigo no sistema plantio direto.

Critérios para o manejo da irrigação; Tensão da água do solo; Coeficiente de culturaz; Manejo da irrigação; Tensiômetro e curva de retenção da água do solo; Tensiômetro e tanque USWB Classe A; Tanque USWB classe A e curva de retenção da água do solo; Exemplos de cálculo.bitstream/CNPAF/22930/1/comt_91.pd

Engaging End-Users in the Collaborative Development of Domain-Speci c Modelling Languages

International audienceDomain-Speci c Modelling Languages (DSMLs) are high-level languages specially designed to perform tasks in a particular domain. When developing DSMLs, the participation of end-users is normally limited to providing domain knowledge and testing the resulting language prototypes. Language developers, which are perhaps not domain experts, are therefore in control of the language development and evolution. This may cause misinterpretations which hamper the development process and the quality of the DSML. Thus, it would be bene cial to promote a more active participation of end-users in the development process of DSMLs. While current DSML workbenches are mono-user and designed for technical experts, we present a process and tool support for the example-driven, collaborative construction of DSMLs in order to engage end-users in the creation of their own languages

Lightweight Lempel-Ziv Parsing

We introduce a new approach to LZ77 factorization that uses O(n/d) words of working space and O(dn) time for any d >= 1 (for polylogarithmic alphabet sizes). We also describe carefully engineered implementations of alternative approaches to lightweight LZ77 factorization. Extensive experiments show that the new algorithm is superior in most cases, particularly at the lowest memory levels and for highly repetitive data. As a part of the algorithm, we describe new methods for computing matching statistics which may be of independent interest.Comment: 12 page

Application of photoreflectance to advanced multilayer structures for photovoltaics

Photoreflectance (PR) is a convenient characterization tool able to reveal optoelectronic properties of semiconductor materials and structures. It is a simple non-destructive and contactless technique which can be used in air at room temperature. We will present experimental results of the characterization carried out by means of PR on different types of advanced photovoltaic (PV) structures, including quantum-dot-based prototypes of intermediate band solar cells, quantum-well structures, highly mismatched alloys, and III?V-based multi-junction devices, thereby demonstrating the suitability of PR as a powerful diagnostic tool. Examples will be given to illustrate the value of this spectroscopic technique for PV including (i) the analysis of the PR spectra in search of critical points associated to absorption onsets; (ii) distinguishing signatures related to quantum confinement from those originating from delocalized band states; (iii) determining the intensity of the electric field related to built-in potentials at interfaces according to the Franz?Keldysh (FK) theory; and (v) determining the nature of different oscillatory PR signals among those ascribed to FK-oscillations, interferometric and photorefractive effects. The aim is to attract the interest of researchers in the field of PV to modulation spectroscopies, as they can be helpful in the analysis of their devices