Estudi del gen UBE3A en la Síndrome d'Angelman i del centre d'impressió en les síndromes de Prader-Willi i d'Angelman

Consultable des del TDXTítol obtingut de la portada digitalitzadaLes síndromes de Prader-Willi (SPW) i d'Angelman (SA) són causades per diferents anomalies genètiques que afecten la regió 15q11-q13 regulada per impressió genètica. La manca d'expressió de gens paterns causa la SPW i anomalies que afecten la còpia materna del gen UBE3A causa la SA. El 70-75% del casos SPW i SA s'originen per delecions de la regió cromosòmica 15q11-q13 en el cromosoma patern o matern respectivament. Un 20-25% dels casos SPW són deguts a disomies uniparentals (DUP) maternes i el 2-5% dels casos SA són causats per DUP paternes. Entre l'1 i el 5% dels casos són causats per un defecte en la impressió (DI) en ambdues síndromes. En la SA la segona causa més freqüent (10-15%) són mutacions puntuals en el gen UBE3A i un percentatge de casos similar a l'anterior presenten una clínica consistent de la SA però es desconeix la causa genètica. Les delecions i DUP tenen un risc de recurrència molt baix. Aproximadament el 85% del casos de DI no presenten delecions ni anomalies en la seqüència del centre regulador de la impressió genètica (CI) i són considerats errors epigenètics amb un risc de recurrència molt baix. En el 15% restant el DI és originat per una deleció en el CI que pot ser familiar comportant un risc del 50% o bé pot ser de novo. L'objectiu principal de la present tesi doctoral va ser millorar les tècniques diagnòstiques de la SPW i la SA i aprofundir en la etiologia d'ambdues síndromes. Per tal d'assolir aquest objectiu es va realitzar la posta a punt de la tècnica M-PCR, per analitzar el patró de metilació del CI que permet el diagnòstic de les síndromes quan la causa és una deleció de la regió 15q11-q13, o una DUP o un DI. Tanmateix s'ha analitzat la seqüència del gen UBE3A en 30 pacients SA amb patró de metilació normal i clínica consistent, i s'ha realitzat l'estudi del CI en els casos SPW i SA amb un DI. Com resultat d'aquests estudis s'han identificat cinc mutacions en el gen UBE3A i una deleció de novo en el centre d'impressió en un pacient SPW. De les cinc mutacions en el gen UBE3A tres han estat de novo i dues familiars. A més d'aquestes cinc mutacions tres no havien estat descrites amb anterioritat. En la resta de pacients amb DI s'ha descartat la presència de deleció i de mutacions puntuals pel que el defecte d'impressió ha estat causat per un error epigenètic. Aquests resultats ens han permès l'assessorament genètic als familiars de risc i oferir un diagnòstic prenatal així com valorar les correlacions fenotip-genotip en la SPW i SA.Prader-Willi syndrome (PWS) and Angelman syndrome (AS) are caused by different genetic abnormalities affecting the 15q11-q13 region regulated by imprinting. Loss of paternal expression genes causes PWS and genetic abnormalities in the maternal UBE3A gene cause AS. Paternal or maternal 15q11-q13 deletions cause 70-75% of PWS and AS cases, respectively. Maternal uniparental disomy (UPD) cause 20-25% of PWS cases and 2-5% of AS cases are caused by paternal UPD. The range 1-5% of cases is due to imprinting defects (ID) in both syndromes. The second cause of AS (10-15%) is an UBE3A gene mutation and in the same percentage of AS patients the genetic cause is unknown. Deletions and UPD have a low recurrence risk. The 85% of ID do not have abnormalities in the imprinting center (IC) and are considered epigenetic defects with a low recurrence risk. The 15% of ID are caused by an IC deletion that could be hereditary with a 50% of recurrence risk or could be sporadic. The aim of this thesis was to improve the PWS and AS diagnostic techniques and to study in depth the etiology of both syndromes. In order to achieve this aim we optimized the M-PCR technique to analyze the IC methylation patern for 15q11-q13 deletions, UPD and ID diagnosis. Moreover, UBE3A sequence analysis was done in 30 AS patients with normal methylation patern and IC study was done in 2 PWS and 4 AS cases with an ID. As a result of these studies we identified five UBE3A mutations and a de novo IC deletion in a PWS ID patient. Out of the five UBE3A mutations three were sporadic and two hereditary. Moreover, three of these five UBE3A mutations have not been previously described. In the other ID patients we conclude the cause is an epimutation since the presence of a deletion or mutations in the IC was rule out. These results have allowed to offer recurrence risk and prenatal diagnosis and to assess phenotype-genotype correlations

Tetrodotoxin : globalization of a local problem

PòsterFebre

Learning and memory disabilities in IUGR babies: Functional and molecular analysis in a rat model

Introduction: Intrauterine growth restriction (IUGR) is the failure of the fetus to achieve its inherent growth potential, and it has frequently been associated with neurodevelopmental problems in childhood. Neurological disorders are mostly associated with IUGR babies with an abnormally high cephalization index (CI) and a brain sparing effect. However, a similar correlation has never been demonstrated in an animal model. The aim of this study was to determine the correlations between CI, functional deficits in learning and memory and alterations in synaptic proteins in a rat model of IUGR. Methods: Utero-placental insufficiency was induced by meso-ovarian vessel cauterization (CMO) in pregnant rats at embryonic day 17 (E17). Learning performance in an aquatic learning test was evaluated 25 days after birth and during 10 days. Some synaptic proteins were analyzed (PSD95, Synaptophysin) by Western blot and immunohistochemistry. Results: Placental insufficiency in CMO pups was associated with spatial memory deficits, which are correlated with a CI above the normal range. CMO pups presented altered levels of synaptic proteins PSD95 and synaptophysin in the hippocampus. Conclusions: The results of this study suggest that learning disabilities may be associated with altered development of excitatory neurotransmission and synaptic plasticity. Although interspecific differences in fetal response to placental insufficiency should be taken into account, the translation of these data to humans suggest that both IUGR babies and babies with a normal birth weight but with intrauterine Doppler alterations and abnormal CI should be closely followed to detect neurodevelopmental alterations during the postnatal periodEuropean Regional Development Fund BFU2014-55373-RMinisterio de Economía y Competitividad MAT2011-29778-C02-02Generalitat de Catalunya 2014 SGR 117

The PEG13-DMR and brain-specific enhancers dictate imprinted expression within the 8q24 intellectual disability risk locus

Background: Genomic imprinting is the epigenetic marking of genes that results in parent-of-origin monoallelic expression. Most imprinted domains are associated with differentially DNA methylated regions (DMRs) that originate in the gametes, and are maintained in somatic tissues after fertilization. This allelic methylation profile is associated with a plethora of histone tail modifications that orchestrates higher order chromatin interactions. The mouse chromosome 15 imprinted cluster contains multiple brain-specific maternally expressed transcripts including Ago2, Chrac1, Trappc9 and Kcnk9 and a paternally expressed gene, Peg13. The promoter of Peg13 is methylated on the maternal allele and is the sole DMR within the locus. To determine the extent of imprinting within the human orthologous region on chromosome 8q24, a region associated with autosomal recessive intellectual disability, Birk-Barel mental retardation and dysmorphism syndrome, we have undertaken a systematic analysis of allelic expression and DNA methylation of genes mapping within an approximately 2 Mb region around TRAPPC9. Results: Utilizing allele-specific RT-PCR, bisulphite sequencing, chromatin immunoprecipitation and chromosome conformation capture (3C) we show the reciprocal expression of the novel, paternally expressed, PEG13 non-coding RNA and maternally expressed KCNK9 genes in brain, and the biallelic expression of flanking transcripts in a range of tissues. We identify a tandem-repeat region overlapping the PEG13 transcript that is methylated on the maternal allele, which binds CTCF-cohesin in chromatin immunoprecipitation experiments and possesses enhancer-blocker activity. Using 3C, we identify mutually exclusive approximately 58 and 500 kb chromatin loops in adult frontal cortex between a novel brain-specific enhancer, marked by H3K4me1 and H3K27ac, with the KCNK9 and PEG13 promoters which we propose regulates brain-specific expression. Conclusions: We have characterised the molecular mechanism responsible for reciprocal allelic expression of the PEG13 and KCNK9 transcripts. Therefore, our observations may have important implications for identifying the cause of intellectual disabilities associated with the 8q24 locu

Neuroprotection with Hypothermia and Allopurinol in an animal model of hypoxic-ischemic injury: Is it a gender question?

Abstract Background Hypoxic-ischemic encephalopathy (HIE) is one of the most important causes of neonatal brain injury. Therapeutic hypothermia (TH) is the standard treatment for term newborns after perinatal hypoxic ischemic injury (HI). Despite this, TH does not provide complete neuroprotection. Allopurinol seems to be a good neuroprotector in several animal studies, but it has never been tested in combination with hypothermia. Clinical findings show that male infants with (HI) fare more poorly than matched females in cognitive outcomes. However, there are few studies about neuroprotection taking gender into account in the results. The aim of the present study was to evaluate the potential additive neuroprotective effect of allopurinol when administrated in association with TH in a rodent model of moderate HI. Gender differences in neuroprotection were also evaluated Methods P10 male and female rat pups were subjected to HI (Vannucci model) and randomized into five groups: sham intervention (Control), no treatment (HI), hypothermia (HIH), allopurinol (HIA), and dual therapy (hypothermia and allopurinol) (HIHA). To evaluate a treatment's neuroprotective efficiency, 24 hours after the HI event caspase3 activation was measured. Damaged area and hippocampal volume were also measured 72 hours after the HI event. Negative geotaxis test was performed to evaluate early neurobehavioral reflexes. Learning and spatial memory were assessed via Morris Water Maze (MWM) test at 25 days of life. Results Damaged area and hippocampal volume were different among treatment groups (p = 0.001). The largest tissue lesion was observed in the HI group, followed by HIA. There were no differences between control, HIH, and HIHA. When learning process was analyzed, no differences were found. Females from the HIA group had similar results to the HIH and HIHA groups. Cleaved caspase 3 expression was increased in both HI and HIA. Despite this, in females cleaved caspase-3 was only differently increased in the HI group. All treated animals present an improvement in short-term (Negative geotaxis) and long-term (WMT) functional tests. Despite this, treated females present better long-term outcome. In short-term outcome no sex differences were observed. Conclusions Our results suggest that dual therapy confers great neuroprotection after an HI event. There were functional, histological, and molecular improvements in all treated groups. These differences were more important in females than in males. No statistically significant differences were found between HIHA and HIH; both of them present a great improvement. Our results support the idea of different regulation mechanisms and pathways of cell death, depending on gender

Imprinting at the PLAGL1 domain is contained within a 70-kb CTCF/cohesin-mediated non-allelic chromatin loop

Paternal duplications of chromosome 6q24, a region that contains the imprinted PLAGL1 and HYMAI transcripts, are associated with transient neonatal diabetes mellitus. A common feature of imprinted genes is that they tend to cluster together, presumably as a result of sharing common cis-acting regulatory elements. To determine the extent of this imprinted cluster in human and mouse, we have undertaken a systematic analysis of allelic expression and DNA methylation of the genes mapping within an similar to 1.4-Mb region flanking PLAGL1/Plagl1. We confirm that all nine neighbouring genes are biallelically expressed in both species. In human we identify two novel paternally expressed PLAGL1 coding transcripts that originate from unique promoter regions. Chromatin immunoprecipitation for CTCF and the cohesin subunits RAD21 and SMC3 reveals evolutionarily conserved binding sites within unmethylated regions similar to 5 kb downstream of the PLAGL1 differentially methylated region and within the PLAGL1 3' untranslated region (UTR). Higher-order chromatin looping occurs between these regions in both expressing and non-expressing tissues, forming a non-allelic chromatin loop around the PLAGL1/Plagl1 gene. In placenta and brain tissues, we identify an additional interaction between the PLAGL1 P3/P4 promoters and the unmethylated element downstream of the PLAGL1 differentially methylated region that we propose facilitates imprinted expression of these alternative isoforms

The relevance of EGFR, ErbB receptors and neuregulins in human adipocytes and adipose tissue in obesity

Objective: To investigate the potential role of EGFR, ErbBs receptors and neuregulins in human adipose tissue physiology in obesity. Methods: Gene expression analysis in human subcutaneous (SAT) and visceral (VAT) adipose tissue in three independent cohorts [two cross-sectional (N = 150, N = 87) and one longitudinal (n = 25)], and in vitro gene knockdown and overexpression experiments were performed. Results: While both SAT and VAT ERBB2 and ERBB4 mRNA increased in obesity, SAT EGFR mRNA was negatively correlated with insulin resistance, but did not change in obesity. Of note, both SAT and VAT EGFR mRNA were significantly associated with adipogenesis and increased during human adipocyte differentiation. In vitro experiments revealed that EGFR, but not ERBB2 and ERBB4, gene knockdown in preadipocytes and in fully differentiated human adipocytes resulted in decreased expression of adipogenic-related genes. ERBB2 gene knockdown also reduced gene expression of fatty acid synthase in fully differentiated adipocytes. In addition, neuregulin 2 (NRG2) mRNA was associated with expression of adipogenic genes in human adipose tissue and adipocytes, and its overexpression increased expression of EGFR and relevant adipogenic genes. Conclusions: This study demonstrates the association between adipose tissue ERBB2 and obesity, confirms the relevance of EGFR on human adipogenesis, and suggests a possible adipogenic role of NRG2

Critical Elements in Supergene Phosphates: The Example of the Weathering Profile at the Gavà Neolithic Mines, Catalonia, Spain

The essential role of Critical Elements (CE) in 21st century economy has led to an increasing demand of these metals and promotes the exploration of non-conventional deposits such as weathering profiles. The present work is focused on the study of a weathering profile located at the Archaeological Park of the Gavà Neolithic Mines, Barcelona, Catalonia, Spain. In the Gavà deposit, acid and oxidising meteoric fluids generated intense weathering during the early Pleistocene, affecting series of Llandoverian black shales and associated syn-sedimentary phosphates. The circulation of these acid fluids at deeper levels of the profile generated supergene vein-like mineralisations comprised of secondary phosphates (e.g., variscite, perhamite, crandallite, phosphosiderite) and sulphates (e.g., jarosite, alunite). This supergene mineralisation is significantly enriched in certain CE (e.g., Ga, Sc, REE, In, Co and Sb) that were mobilised from host rock components and later hosted in the crystal lattice of supergene minerals. Weathering processes and corresponding supergene enrichment of CE at the Gavà deposit could be used as an example to determine exploration guidelines of CE in weathering profiles and associated supergene phosphates worldwide

Serum Neuregulin 4 is negatively correlated with insulin sensitivity in humans and impairs mitochondrial respiration in HepG2 cells

Neuregulin 4 (NRG4) has been described to improve metabolic disturbances linked to obesity status in rodent models. The findings in humans are controversial. We aimed to investigate circulating NRG4 in association with insulin action in humans and the possible mechanisms involved. Insulin sensitivity (euglycemic hyperinsulinemic clamp) and serum NRG4 concentration (ELISA) were analysed in subjects with a wide range of adiposity (n = 89). In vitro experiments with human HepG2 cell line were also performed. Serum NRG4 was negatively correlated with insulin sensitivity (r = −0.25, p = 0.02) and positively with the inflammatory marker high-sensitivity C reative protein (hsCRP). In fact, multivariant linear regression analyses showed that insulin sensitivity contributed to BMI-, age-, sex-, and hsCRP-adjusted 7.2% of the variance in serum NRG4 (p = 0.01). No significant associations were found with adiposity measures (BMI, waist circumference or fat mass), plasma lipids (HDL-, LDL-cholesterol, or fasting triglycerides) or markers of liver injury. Cultured hepatocyte HepG2 treatedwith human recombinantNRG4 had an impact on hepatocyte metabolism, leading to decreased gluconeogenic- and mitochondrial biogenesis-related gene expression, and reduced mitochondrial respiration, without effects on expression of lipid metabolism-related genes. Similar but more pronounced effects were found after neuregulin 1 administration. In conclusion, sustained higher serum levels of neuregulin-4, observed in insulin resistant patients may have deleterious effects on metabolic and mitochondrial function in hepatocytes. However, findings from in vitro experiments should be confirmed in human primary hepatocytes

Geological context and origin of the mineralization of the historic and prehistoric iron mines in the Gavà area, Catalonia (NE Iberian Peninsula)

Mining for iron resources in the Gavà area of Catalonia occurred intermittently during the Iberian and Roman epochs, the Middle Ages, and continuing until the industrial era, as evidenced by historical and archaeological documents. Iron mining in this area could have occurred even earlier, during the Neolithic period. Iron ores were formed in two stages: (1) a regional hydrothermal alteration associated with Hercynian thrusts that produced the ankeritization of limestones within the Paleozoic series, and (2) the karstic replacement of these iron-rich carbonates during the Pliocene and Quaternary by means of supergenic fluids that produced ochres with goethite and hematite. The style of mineralization largely depends on the characteristics of the replaced protolith, and three styles of mineralization can be defined: (1)The supergenic replacement of ankeritized massive Pridolian limestones only produced local replacements that were restricted to structural or stratigraphic discontinuities, therefore, the mineralization has reduced dimensions and occurs as irregular veinlets or pipes; (2) The replacement of interbedded ankeritized limestones and pyrite-bearing shales (Lockovian) produced massive ores in pod-shaped bodies rich in silica impurities derived from the altered shales; and (3) The replacement of carbonates overthrust by pyrite- and phosphate-rich shales favored the formation of massive stratabound deposits, which are the largest and highest grade deposits in the study area, and may be locally enriched in minerals of the alunite supergroup and Ca- and Fe-rich phosphates. Outcrops of all of these styles of mineralization were mined by the Iberian cultures, during the roman period and in the Middle Ages, taking advantage of the relatively high metallurgical quality of the ores.Therefore, the exploitation during these epochs was artisanal by means of trenches or small pits. In contrast, during the industrial era only the massive stratabound deposits were exploited in open pits and underground galleries