529 research outputs found

    Responding to chromosomal breakage during M-phase: insights from a cell-free system

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    DNA double strand breaks (DSBs) activate ATM and ATR dependent checkpoints that prevent the onset of mitosis. However, how cells react to DSBs occurring when they are already in mitosis is poorly understood. The Xenopus egg extract has been utilized to study cell cycle progression and DNA damage checkpoints. Recently this system has been successfully used to uncover an ATM and ATR dependent checkpoint affecting centrosome driven spindle assembly. These studies have led to the identification of XCEP63 as major target of this pathway. XCEP63 is a coiled-coil rich protein localized at centrosome essential for proper spindle assembly. ATM and ATR directly phosphorylate XCEP63 on serine 560 inducing its delocalization from centrosome, which in turn delays spindle assembly. This pathway might contribute to regulate DNA repair or mitotic cell survival in the presence of chromosome breakage

    Structure of human Cdc45 and implications for CMG helicase function.

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    Cell division cycle protein 45 (Cdc45) is required for DNA synthesis during genome duplication, as a component of the Cdc45-MCM-GINS (CMG) helicase. Despite its essential biological function, its biochemical role in DNA replication has remained elusive. Here we report the 2.1-Å crystal structure of human Cdc45, which confirms its evolutionary link with the bacterial RecJ nuclease and reveals several unexpected features that underpin its function in eukaryotic DNA replication. These include a long-range interaction between N- and C-terminal DHH domains, blocking access to the DNA-binding groove of its RecJ-like fold, and a helical insertion in its N-terminal DHH domain, which appears poised for replisome interactions. In combination with available electron microscopy data, we validate by mutational analysis the mechanism of Cdc45 association with the MCM ring and GINS co-activator, critical for CMG assembly. These findings provide an indispensable molecular basis to rationalize the essential role of Cdc45 in genomic duplication.We would like to thank Ben Luisi for help with X-ray data collection, Alessandro Costa for sharing the cryoEM data of the CMG complex before publication and Joseph Maman for help with the analysis of Cdc45-DNA interactions. This work was supported by a Wellcome Trust Senior Investigator award to LP (104641/Z/14/Z) and a Cambridge Gates PhD scholarship to ACS. VC is funded by the Associazione Italiana per Ricerca sul Cancro (AIRC), the European Research Council (ERC) consolidator grant (614541), the Association for International Cancer Research (AICR), the Giovanni-Armenise award to VC, the Epigen Progetto Bandiera and the Fondazione Telethon.This is the final version of the article. It first appeared from Nature via https://doi.org/10.1038/ncomms1163

    A review of daylighting strategies in schools: state of the art and expected future trends

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    The study of daylight conditions within educational buildings has been a topic of interest since the nineteenth century in western countries, and European ones in particular. Although it has been argued that providing a view outside—or even using daylight instead of more stable and manageable artificial light—could reduce students’ performance without providing a pleasant and healthy environment, nowadays it seems that a large consensus upon the need to design well daylit spaces is being reached. This paper reviews how the research community has tackled the task of understanding and solving the complex relationships amongst local climate, users’ needs and design constraints in school buildings by showing the different approaches used and technological solutions suggested. The reported case studies, based either on experimental measurements or on simulations, highlight the need of a comprehensive approach to the topic to fully understand the non‐trivial requirements of a daylit educational environment

    A Macroscopic Mathematical Model For Cell Migration Assays Using A Real-Time Cell Analysis

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    Experiments of cell migration and chemotaxis assays have been classically performed in the so-called Boyden Chambers. A recent technology, xCELLigence Real Time Cell Analysis, is now allowing to monitor the cell migration in real time. This technology measures impedance changes caused by the gradual increase of electrode surface occupation by cells during the course of time and provide a Cell Index which is proportional to cellular morphology, spreading, ruffling and adhesion quality as well as cell number. In this paper we propose a macroscopic mathematical model, based on \emph{advection-reaction-diffusion} partial differential equations, describing the cell migration assay using the real-time technology. We carried out numerical simulations to compare simulated model dynamics with data of observed biological experiments on three different cell lines and in two experimental settings: absence of chemotactic signals (basal migration) and presence of a chemoattractant. Overall we conclude that our minimal mathematical model is able to describe the phenomenon in the real time scale and numerical results show a good agreement with the experimental evidences

    In vivo evaluation of renal function using intravital multiphoton microscopy on rats and mice with induced or spontaneous renal injury

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    Multiphoton microscopy is a powerful tool for the in vivo imaging of renal processes thanks to the improved tissue penetration and the high spatial and temporal resolution. Intravital imaging permits to evaluate dynamic processes and pathophysiological parameters in real time using non-invasive methods. This project aims to use existing multiphoton microscopy approaches to evaluate in vivo many renal parameters in our animal models and, at the same time, to develop an original application for the assessment of single nephron glomerular filtration rate. In addition, a method for detection and quantification of renal fibrosis ex vivo was developed coupling multiphoton microscopy and machine learning-based segmentation software. The linescan-based innovative methodology offered a great improvement in terms of temporal resolution and provided reliable values of single nephron glomerular filtration rate comparable with previous methods. The validation of this approach was carried out measuring renal filtration in low-dose dopamine and ischemic treated rats, which showed significantly higher and lower values of single nephron glomerular filtration rate, respectively, compared to the control group. The dynamic process of renal glucose reabsorption was elucidated in GLUT2 cKO mice mimicking the Fanconi Bickel Syndrome. Intravital multiphoton microscopy of the renal tubules after the continuous infusion of fluorescent 2-NBDG demonstrated an impaired utilization of glucose in these mice compared to the control. We also developed a novel approach based on second harmonic generation tool provided by the multiphoton microscopy and a machine learning-based segmentation software to detect and quantify renal fibrosis in kidney slices. These multiphoton applications highlighted the great potential of intravital microscopy to elucidate in real time the mechanisms involved in renal pathophysiology at cellular and subcellular resolutio
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