Unraveling the presence of multiple plagioclase populations and identification of representative two-dimensional sections using a statistical and numerical approach

Many plagioclase phenocrysts from volcanic and plutonic rocks display quite complex chemical and textural zoning patterns. Understanding the zoning patterns and variety of crystal populations holds clues to the processes and timescales that lead to the formation of the igneous rocks. However, in addition to a "true" natural complexity of the crystal population, the large variety of plagioclase types can be partly artifacts of the use of two-dimensional (2D) petrographic thin sections and random cuts of three-dimensional (3D) plagioclase crystals. Thus, the identification of the true number of plagioclase populations, and the decision of which are "representative" crystal sections to be used for detailed trace element and isotope analysis is not obvious and tends to be subjective. Here we approach this problem with a series of numerical simulations and statistical analyses of a variety of plagioclase crystals zoned in 3D. We analyze the effect of increasing complexity of zoning based on 2D chemical maps (e.g., backscattered electron images, BSE). We first analyze the random sections of single crystals, and then study the effect of mixing of different crystal populations in the samples. By quantifying the similarity of the compositional histogram of about a hundred 2D plagioclase sections it is possible to identify the so-called reference and ideal sections that are representative of the real 3D crystal populations. These section types allow filtering out the random-cut effects and explain more than 90% of the plagioclase compositional data of a given sample. Our method allows the identification of the main crystal populations and representative crystals that can then be used for a more robust interpretation of magmatic processes and timescales

Massive atmospheric sulfur loading of the AD 1600 Huaynaputina eruption and implications for petrologic sulfur estimates.

International audienceWe combine petrological, analytical, and thermodynamical data to constrain the sulfur yield of the AD 1600 Huaynaputina eruption which has been associated with the largest Earth's temperature shift in the last 600 years. The calculated amount of S (26–55 Tg), partly overlaps, but ranges to almost twice the amount estimated from ice-core data (16–32 Tg), the higher values of our estimate probably reflect that not all S released by the eruption reached the stratosphere. Our study also shows that it is possible to estimate the atmospheric sulfur loading from the volcanic products themselves, which opens the possibility to explore volcano-climate links beyond the time period covered by ice-core archive

Petrological and experimental constraints on the pre-eruption conditions of holocene dacite from volcan San Pedro (36°S, Chilean Andes)and the importance of sulphur in silicic subduction-related magmas.

We present an experimental and petrological study aimed at estimating the pre-eruptive conditions of a Holocene dacitic lava from Volcán San Pedro (36°S, Chilean Andes). Phase-equilibrium experiments were performed at temperatures (T) from 800 to 950°C, and mainly at 200 MPa, but also at 55, 150, and 406 MPa. Oxygen fugacity (fO2) ranged from the Ni-NiO buffer (NNO) to 3*5 log units above (NNO + 3*5), and water contents from ~3 to ~6 wt %. We also report several experiments where we added sulphur (0*1-1 wt % S) to the dacite. The main mineral assemblage of the dacite (hornblende + orthopyroxene + plagioclase) is stable at 200 ± 50 MPa, 850 ± 10°C, with 4*5-5*5 wt % H2O in the melt, and at fO2 of NNO + 1*2 ± 0*2, in accord with the crystallinity, mineral proportions, and T-fO2 determination from Fe-Ti oxides of the lava. However, biotite, which is also present in the dacite, is stable at these same T-fO2 conditions only in experiments with >0*1 wt % S added. This result is in accord with the occurrence of pyrrhotite in the lava, and with the presence of S in glass inclusions and biotite (~300 ppm, and up 170 ppm, respectively). Moreover, the zoning patterns and compositions of plagioclase phenocrysts together with the presence of high-temperature minerals (e.g. clinopyroxene) in the lava suggest that the petrological history of the dacite is more complex than a single near-equilibrium crystallization stage, and could be explained by short-lived (<100 years) temperature fluctuations (~50°C) in the magma reservoir

Wind Speed as a Dominant Source of Periodicities in Reported Emission Rates of Volcanic SO2

Volcanoes have been found to display periodicities or cyclic trends in a wide range of phenomena. These include the eruptive activity itself, but also in the time series of geophysical and geochemical monitoring data such as volcanic degassing. Here, we test the existence of periodicities of volcanic degassing at 32 volcanoes using the time series of sulfur dioxide (SO2) emission rates from data of the Network of Volcanic and Atmospheric Change (NOVAC). We use the Lomb-Scargle periodogram to analyze the SO2 data which allows efficient computation of a Fourier-like power spectrum from unevenly sampled data. We were able to calculate False-Alarm Probabilities in 28 of the 32 volcanoes, and we identified significant periodicities in the SO2 emission rates in 17 of the 28 volcanoes. However, we find that most of these periodicities are also present in the plume speeds used to determine SO2 emission rates. Periodicities at about 30–70, ∼120, and ∼180\ua0days were identified at volcanoes located between 16\ub0N and 16\ub0S and are related to intraseasonality and interseasonality in global trade winds and not volcanic in origin. Periodicities between 30 and 70\ua0days in both plume speed and SO2 emission rates are associated to the Madden-Julian Oscillation that is responsible for intraseasonal variability in the tropical atmosphere. Our study highlights the importance of using local wind data for deriving realistic SO2 emissions and the identification of short-term periodicity in volcanic behavior

Editorial: The Impact of Open Science for Evaluation of Volcanic Hazards

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Equilibration Scales in Silicic to Intermediate Magmas - Implications for Experimental Studies

International audienceExperimental phase equilibrium studies are increasingly being used for the determination of intensive variables (P, T, fH2O, fO2 ) in silicic to intermediate magmas. In contrast, silicic igneous bodies are now perceived as open, periodically recharged, systems involving only limited chemical equilibration. Thus, the use of laboratory-determined crystal–liquid equilibrium data needs clarification. Here we review the field, petrological and geochemical evidence concerning states and scales of chemical equilibrium in silicic magma bodies. It is concluded that total chemical equilibrium is generally not the rule. However, a subsystem in local equilibrium (the reactive magma) can be identified. Equilibration scales in silicic magmas are rate-limited either by diffusive flux in crystals (DICL regime) or by diffusive flux in the melt (MD regime). The recognition that equilibrium in magmas is limited to a reactive subsystem requires phase equilibrium studies to be chemically scaled. Experiments, either of total or partial equilibrium type, should aim at a close reproduction of equilibrium states specific to natural systems. The laboratory reconstruction of the natural equilibrium states guarantees a precise determination of the pre-eruptive parameters and a reliable application of the experimental data to active volcanic systems

The Importance of Digging into the Genetics of SMN Genes in the Therapeutic Scenario of Spinal Muscular Atrophy

Estructura híbrida; Atrofia muscular espinal; Neurona motora de supervivencia 1Hybrid structure; Spinal muscular atrophy; Survival motor neuron 1Estructura híbrida; Atròfia muscular espinal; Neurona motora de supervivència 1After 26 years of discovery of the determinant survival motor neuron 1 and the modifier survival motor neuron 2 genes (SMN1 and SMN2, respectively), three SMN-dependent specific therapies are already approved by FDA and EMA and, as a consequence, worldwide SMA patients are currently under clinical investigation and treatment. Bi-allelic pathogenic variants (mostly deletions) in SMN1 should be detected in SMA patients to confirm the disease. Determination of SMN2 copy number has been historically employed to correlate with the phenotype, predict disease evolution, stratify patients for clinical trials and to define those eligible for treatment. In view that discordant genotype-phenotype correlations are present in SMA, besides technical issues with detection of SMN2 copy number, we have hypothesized that copy number determination is only the tip of the iceberg and that more deepen studies of variants, sequencing and structures of the SMN2 genes are necessary for a better understanding of the disease as well as to investigate possible influences in treatment responses. Here, we highlight the importance of a comprehensive approach of SMN1 and SMN2 genetics with the perspective to apply for better prediction of SMA in positive neonatal screening cases and early diagnosis to start treatments.This work was partially supported by Grants from Biogen and Roche (to E.F.T. supporting M.C.-R. and L.B.-P.), and from Spanish Instituto de Salud Carlos III, Fondo de Investigaciones Sanitarias and cofunded with ERDF funds (Grant No. FIS PI18/000687) (to E.F.T.)

Recommendations for Interpreting and Reporting Silent Carrier and Disease-Modifying Variants in SMA Testing Workflows

Carrier screening; Diagnosis; Spinal muscular atrophyCribado de portadores; Diagnóstico; Atrofia muscular espinalCribratge de portadors; Diagnòstic; Atròfia muscular espinalGenetic testing for SMA diagnosis, newborn screening, and carrier screening has become a significant public health interest worldwide, driven largely by the development of novel and effective molecular therapies for the treatment of spinal muscular atrophy (SMA) and the corresponding updates to testing guidelines. Concurrently, understanding of the underlying genetics of SMA and their correlation with a broad range of phenotypes and risk factors has also advanced, particularly with respect to variants that modulate disease severity or impact residual carrier risks. While testing guidelines are beginning to emphasize the importance of these variants, there are no clear guidelines on how to utilize them in a real-world setting. Given the need for clarity in practice, this review summarizes several clinically relevant variants in the SMN1 and SMN2 genes, including how they inform outcomes for spinal muscular atrophy carrier risk and disease prognosis.This work was partially supported by Grants from Biogen ESP-SMG-17-11256 (to E.F.T. supporting L.B.-P.), Roche and Spanish Instituto de Salud Carlos III, Fondo de Investigaciones Sanitarias and co-funded with ERDF funds (Grant No. FIS PI18/000687) (to E.F.T.)

Studies on cambial activity: advances and challenges in the knowledge of growth dynamics of Brazilian woody species

The lack of specific research on the sequence of events that determine plant growth from meristem until wood formation represents a gap in the knowledge of growth dynamics in woody species. In this work, we surveyed published studies concerning cambial activity of Brazilian native species aiming at allowing the comparison of applied methods and obtained results. The annual cambial seasonality was observed in all the investigated species. Nevertheless, we found high heterogeneity in the used methodologies. As a result from this analysis, our opinion points to the need for standardizing sampling protocols and for discussing the suitability of experimental designs. This will help to define with greater precision the factors that determine the radial growth in the different tropical ecosystems.Fil: Callado, Catia H.. Universidade do Estado do Rio de Janeiro. Laboratório de Anatomia Vegetal. Instituto de Biologia Roberto Alcantara Gomes; Brasil. Universidade do Estado do Rio de Janeiro. Programa de Pós-Graduação em Biologia Vegetal; BrasilFil: Vasconcellos, Thaís J.. Universidade do Estado do Rio de Janeiro. Programa de Pós-Graduação em Biologia Vegetal; BrasilFil: Costa, Monique S.. Universidade do Estado do Rio de Janeiro. Programa de Pós-Graduação em Biologia Vegetal; BrasilFil: Barros, Claudia F..Fil: Roig Junent, Fidel Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Científico Tecnológico Mendoza. Instituto Argentino de Nivología, Glaciología y Ciencias Ambientales; ArgentinaFil: Tomazello-Filho, Mário. Universidade de São Paulo. Escola Superior de Agricultura Luis de Queiroz. Departamento de Ciências Florestais ; Brasi

Dynamics and timescales of mafic–silicic magma interactions at Soufrière Hills Volcano, Montserrat

Mafic magma intrusions into silica-rich magmatic reservoirs are commonly proposed to drive the eruptions of andesitic hybrid magmas that characterise many arc volcanoes. However, interactions between contrasting magmas involve large gradients of physical and chemical properties that change over time, and the details of such processes have proven difficult to constrain. In this paper we investigate the dynamics of magma mingling and mixing using chemical and textural zoning patterns recorded in plagioclase crystals from the February 2010 eruption at Soufrière Hills Volcano, Montserrat. This eruption is considered a classic example of interactions between the andesite magma that constitutes the bulk of the erupted volume and the basaltic andesite that occurs as enclaves. We find that plagioclase crystals are characterised by two well-defined zones that record mafic–silicic magma interaction: a crystal interior, often identified by a patchy, dusty and oscillatory zoning, and an overgrowth zone (rim) of a different composition. We use the anorthite and Mg contents to track the thermal and compositional changes experienced by the crystals over time. Our results reveal that the crystal rims formed a few hours to days prior to eruption, during co-eruptive magmatic interactions. The interaction between the two magmas with contrasting rheology is likely increased by a narrowing conduit geometry towards the surface, which facilitates convection and additional interface contact of the two magmas. Our findings shed new light on the nature and timing of magmatic interactions driving the final eruptive phase at Soufrière Hills Volcano and help to propose an interpretative framework of the monitoring signals