44 research outputs found

    Image-based biomechanical models of the musculoskeletal system

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    Finite element modeling is a precious tool for the investigation of the biomechanics of the musculoskeletal system. A key element for the development of anatomically accurate, state-of-the art finite element models is medical imaging. Indeed, the workflow for the generation of a finite element model includes steps which require the availability of medical images of the subject of interest: segmentation, which is the assignment of each voxel of the images to a specific material such as bone and cartilage, allowing for a three-dimensional reconstruction of the anatomy; meshing, which is the creation of the computational mesh necessary for the approximation of the equations describing the physics of the problem; assignment of the material properties to the various parts of the model, which can be estimated for example from quantitative computed tomography for the bone tissue and with other techniques (elastography, T1rho, and T2 mapping from magnetic resonance imaging) for soft tissues. This paper presents a brief overview of the techniques used for image segmentation, meshing, and assessing the mechanical properties of biological tissues, with focus on finite element models of the musculoskeletal system. Both consolidated methods and recent advances such as those based on artificial intelligence are described

    A fresh look at spinal alignment and deformities: Automated analysis of a large database of 9832 biplanar radiographs

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    We developed and used a deep learning tool to process biplanar radiographs of 9,832 non-surgical patients suffering from spinal deformities, with the aim of reporting the statistical distribution of radiological parameters describing the spinal shape and the correlations and interdependencies between them. An existing tool able to automatically perform a three-dimensional reconstruction of the thoracolumbar spine has been improved and used to analyze a large set of biplanar radiographs of the trunk. For all patients, the following parameters were calculated: spinopelvic parameters; lumbar lordosis; mismatch between pelvic incidence and lumbar lordosis; thoracic kyphosis; maximal coronal Cobb angle; sagittal vertical axis; T1-pelvic angle; maximal vertebral rotation in the transverse plane. The radiological parameters describing the sagittal alignment were found to be highly interrelated with each other, as well as dependent on age, while sex had relatively minor but statistically significant importance. Lumbar lordosis was associated with thoracic kyphosis, pelvic incidence and sagittal vertical axis. The pelvic incidence-lumbar lordosis mismatch was found to be dependent on the pelvic incidence and on age. Scoliosis had a distinct association with the sagittal alignment in adolescent and adult subjects. The deep learning-based tool allowed for the analysis of a large imaging database which would not be reasonably feasible if performed by human operators. The large set of results will be valuable to trigger new research questions in the field of spinal deformities, as well as to challenge the current knowledge

    The Revival of the Notes Field: Leveraging the Unstructured Content in Electronic Health Records

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    Problem: Clinical practice requires the production of a time- and resource-consuming great amount of notes. They contain relevant information, but their secondary use is almost impossible, due to their unstructured nature. Researchers are trying to address this problems, with traditional and promising novel techniques. Application in real hospital settings seems not to be possible yet, though, both because of relatively small and dirty dataset, and for the lack of language-specific pre-trained models.Aim: Our aim is to demonstrate the potential of the above techniques, but also raise awareness of the still open challenges that the scientific communities of IT and medical practitioners must jointly address to realize the full potential of unstructured content that is daily produced and digitized in hospital settings, both to improve its data quality and leverage the insights from data-driven predictive models.Methods: To this extent, we present a narrative literature review of the most recent and relevant contributions to leverage the application of Natural Language Processing techniques to the free-text content electronic patient records. In particular, we focused on four selected application domains, namely: data quality, information extraction, sentiment analysis and predictive models, and automated patient cohort selection. Then, we will present a few empirical studies that we undertook at a major teaching hospital specializing in musculoskeletal diseases.Results: We provide the reader with some simple and affordable pipelines, which demonstrate the feasibility of reaching literature performance levels with a single institution non-English dataset. In such a way, we bridged literature and real world needs, performing a step further toward the revival of notes fields

    Multi-platform, Multi-scale and Multi-temporal 4D Glacier Monitoring. The Rutor Glacier Case Study

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    At present most alpine glaciers are not in equilibrium with the current climate, as a result they are undergoing a dramatic mass loss. Monitoring glacial variations is crucial to assess the consequences of climate change on the territory. In this work different geomatics techniques are exploited to measure and monitor the Rutor glacier over the years. In this study two different techniques were adopted to generate 3 digital surface models (DSMs): aerial and satellite photogrammetry. Two photogrammetric aerial surveys were carried out: at the end of the hydrological year 2019/20 and at the end of the following hydrological year. Additionally, a very high-resolution satellite stereo pair, acquired by the Pléiades-1A platform in 2017, was processed to assess whether satellite images can be applied to extract the 3D surface of the Rutor glacier. In order to evaluate the Rutor glacier mass-balance throughout the years several reference points were positioned and measured before the 2021 aerial flight. Thanks to the presence of the materialized points the 2021 model is considered as the ‘Reference Model’ against which subsequent models can be compared for glacier analysis. This model was validated by means of a comparison with the authoritative Regional DSM based on LiDAR surveys. In alpine glaciers, the positioning of artificial square cross target in time invariant areas is crucial to enable a multitemporal 4D analysis. The use of very high-resolution satellite imagery allows large areas to be mapped in 3D, but with lower accuracies proportionally decreasing with respect to slope and exposure

    Automatic Calculation of Cervical Spine Parameters Using Deep Learning: Development and Validation on an External Dataset

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    STUDY DESIGN Retrospective data analysis. OBJECTIVES This study aims to develop a deep learning model for the automatic calculation of some important spine parameters from lateral cervical radiographs. METHODS We collected two datasets from two different institutions. The first dataset of 1498 images was used to train and optimize the model to find the best hyperparameters while the second dataset of 79 images was used as an external validation set to evaluate the robustness and generalizability of our model. The performance of the model was assessed by calculating the median absolute errors between the model prediction and the ground truth for the following parameters: T1 slope, C7 slope, C2-C7 angle, C2-C6 angle, Sagittal Vertical Axis (SVA), C0-C2, Redlund-Johnell distance (RJD), the cranial tilting (CT) and the craniocervical angle (CCA). RESULTS Regarding the angles, we found median errors of 1.66° (SD 2.46°), 1.56° (1.95°), 2.46° (SD 2.55), 1.85° (SD 3.93°), 1.25° (SD 1.83°), .29° (SD .31°) and .67° (SD .77°) for T1 slope, C7 slope, C2-C7, C2-C6, C0-C2, CT, and CCA respectively. As concerns the distances, we found median errors of .55 mm (SD .47 mm) and .47 mm (.62 mm) for SVA and RJD respectively. CONCLUSIONS In this work, we developed a model that was able to accurately predict cervical spine parameters from lateral cervical radiographs. In particular, the performances on the external validation set demonstrate the robustness and the high degree of generalizability of our model on images acquired in a different institution

    Reducing the environmental impact of surgery on a global scale: systematic review and co-prioritization with healthcare workers in 132 countries

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    Abstract Background Healthcare cannot achieve net-zero carbon without addressing operating theatres. The aim of this study was to prioritize feasible interventions to reduce the environmental impact of operating theatres. Methods This study adopted a four-phase Delphi consensus co-prioritization methodology. In phase 1, a systematic review of published interventions and global consultation of perioperative healthcare professionals were used to longlist interventions. In phase 2, iterative thematic analysis consolidated comparable interventions into a shortlist. In phase 3, the shortlist was co-prioritized based on patient and clinician views on acceptability, feasibility, and safety. In phase 4, ranked lists of interventions were presented by their relevance to high-income countries and low–middle-income countries. Results In phase 1, 43 interventions were identified, which had low uptake in practice according to 3042 professionals globally. In phase 2, a shortlist of 15 intervention domains was generated. In phase 3, interventions were deemed acceptable for more than 90 per cent of patients except for reducing general anaesthesia (84 per cent) and re-sterilization of ‘single-use’ consumables (86 per cent). In phase 4, the top three shortlisted interventions for high-income countries were: introducing recycling; reducing use of anaesthetic gases; and appropriate clinical waste processing. In phase 4, the top three shortlisted interventions for low–middle-income countries were: introducing reusable surgical devices; reducing use of consumables; and reducing the use of general anaesthesia. Conclusion This is a step toward environmentally sustainable operating environments with actionable interventions applicable to both high– and low–middle–income countries

    Image annotation and curation in radiology: an overview for machine learning practitioners

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    Abstract “Garbage in, garbage out” summarises well the importance of high-quality data in machine learning and artificial intelligence. All data used to train and validate models should indeed be consistent, standardised, traceable, correctly annotated, and de-identified, considering local regulations. This narrative review presents a summary of the techniques that are used to ensure that all these requirements are fulfilled, with special emphasis on radiological imaging and freely available software solutions that can be directly employed by the interested researcher. Topics discussed include key imaging concepts, such as image resolution and pixel depth; file formats for medical image data storage; free software solutions for medical image processing; anonymisation and pseudonymisation to protect patient privacy, including compliance with regulations such as the Regulation (EU) 2016/679 “General Data Protection Regulation” (GDPR) and the 1996 United States Act of Congress “Health Insurance Portability and Accountability Act” (HIPAA); methods to eliminate patient-identifying features within images, like facial structures; free and commercial tools for image annotation; and techniques for data harmonisation and normalisation. Relevance statement This review provides an overview of the methods and tools that can be used to ensure high-quality data for machine learning and artificial intelligence applications in radiology. Key points • High-quality datasets are essential for reliable artificial intelligence algorithms in medical imaging. • Software tools like ImageJ and 3D Slicer aid in processing medical images for AI research. • Anonymisation techniques protect patient privacy during dataset preparation. • Machine learning models can accelerate image annotation, enhancing efficiency and accuracy. • Data curation ensures dataset integrity, compliance, and quality for artificial intelligence development. Graphical Abstrac

    Advancing spine care through AI and machine learning: overview and applications

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    Machine learning (ML), a subset of artificial intelligence, is crucial for spine care and research due to its ability to improve treatment selection and outcomes, leveraging the vast amounts of data generated in health care for more accurate diagnoses and decision support. ML's potential in spine care is particularly notable in radiological image analysis, including the localization and labeling of anatomical structures, detection and classification of radiological findings, and prediction of clinical outcomes, thereby paving the way for personalized medicine. The manuscript discusses ML's application in spine care, detailing supervised and unsupervised learning, regression, classification, and clustering, and highlights the importance of both internal and external validation in assessing ML model performance. Several ML algorithms such as linear models, support vector machines, decision trees, neural networks, and deep convolutional neural networks, can be used in the spine domain to analyze diverse data types (visual, tabular, omics, and multimodal).ISSN:2396-754
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