Microbial dynamics and biogeochemistry in the North Pacific Subtropical Gyre

The research presented in this dissertation describes the influence of planktonic bacterial growth on upper ocean organic matter dynamics in the North Pacific Subtropical Gyre (NPSG). Examination of the temporal dynamics in dissolved organic matter (DOM) was coupled with investigations that targeted the influence of heterotrophic bacterial production (HBP) on organic matter fluxes in the NPSG. Nine cruises to the Hawaii Ocean Time-series field site Station ALOHA revealed that HBP accounted for a large flux of organic carbon in the upper ocean of the NPSG. HBP was significantly enhanced by sunlight, with photoenhancement of HBP accounting for 3.2 mol C m-2 yr-1, equivalent to 21% of the annual photoautotrophic production in this ecosystem. These observations suggest that HBP in the upper ocean of the oligotrophic NPSG exerts a large influence over organic matter fluxes in this ecosystem, and that a large fraction of HBP depends on sunlight. Several experiments were conducted to asses the response of heterotrophic protein production to irradiance at Station ALOHA. The results of these experiments revealed that HBP responded to irradiance similar to the response of photosynthesis to irradiance in this ecosystem. Upper ocean HBP increased with light intensity at low light fluxes (\u3c200 mumol quanta m-2 s -1), but saturated or declined with increasing irradiance. Experiments conducted in the upper and lower photic zone revealed significant photoinhibition of bacterial production in the lower photic zone. Overall, the heterotrophic response was similar to the photosynthetic response, suggesting light-driven HBP could result from mixotrophic growth by the photoautotrophic unicellular cyanobacteria Prochlorococcus. Analyses of dissolved organic matter (DOM) inventories from 1988 to 1999 revealed multiyear increases in the inventories of dissolved organic carbon, nitrogen, and phosphorous (DOC, DON, and DOP) in the upper ocean of the NPSG. During the latter half of the observation period, rates of DOP accumulation declined, coincident with significant DOC and DON accumulation. Analyses of bacterial population dynamics between 1992 and 1999 revealed an apparent shift in the abundance of Prochlorococcus during the period of observation. These results suggest that prokaryote population structure directly influences the cycling of organic matter in this ecosystem

Spatial and Temporal Dynamics of Inorganic Phosphate and Adenosine-5’-Triphosphate in the North Pacific Ocean

Temporal variability in dissolved inorganic, organic phosphate (Pi, DOP) and particulate phosphorus (PPO4) concentrations, and microbial utilization of Pi and dissolved adenosine-5′-triphosphate (DATP) was studied at Station ALOHA (22.75◦N, 158◦W) in the North Pacific Subtropical Gyre (NPSG) over a multi-year period. Spatial variability of the same properties was investigated along two transects, to and from Hawaii, that traversed the NPSG boundaries to the east (2014) and north (2016). Radiotracer techniques were employed to measure the turnover time of Pi and DATP pools to calculate Pi uptake rates and the Pi hydrolysis rates of DATP. Pi concentrations were more variable, both in time and space, than DOP, ranging two orders of magnitude compared to a factor of two for DOP. The DATP pool, while constituting on average 0.2 μm size class dominating the DATP uptake. Our results indicate that during Pi limiting conditions, regenerated P is rapidly consumed, and that Pi limitation occurs locally and transiently but does not appear to be the predominant condition in the upper water column of the NPSG

Diversity and productivity of photosynthetic picoeukaryotes in biogeochemically distinct regions of the South East Pacific Ocean

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Limnology and Oceanography 61 (2016): 806–824, doi:10.1002/lno.10255.Picophytoplankton, including photosynthetic picoeukaryotes (PPE) and unicellular cyanobacteria, are important contributors to plankton biomass and primary productivity. In this study, phytoplankton composition and rates of carbon fixation were examined across a large trophic gradient in the South East Pacific Ocean (SEP) using a suite of approaches: photosynthetic pigments, rates of 14C-primary productivity, and phylogenetic analyses of partial 18S rRNA genes PCR amplified and sequenced from flow cytometrically sorted cells. While phytoplankton >10 μm (diatoms and dinoflagellates) were prevalent in the upwelling region off the Chilean coast, picophytoplankton consistently accounted for 55–92% of the total chlorophyll a inventories and >60% of 14C-primary productivity throughout the sampling region. Estimates of rates of 14C-primary productivity derived from flow cytometric sorting of radiolabeled cells revealed that the contributions of PPE and Prochlorococcus to euphotic zone depth-integrated picoplankton productivity were nearly equivalent (ranging 36–57%) along the transect, with PPE comprising a larger share of picoplankton productivity than cyanobacteria in the well-lit (>15% surface irradiance) region compared with in the lower regions (1–7% surface irradiance) of the euphotic zone. 18S rRNA gene sequence analyses revealed the taxonomic identities of PPE; e.g., Mamiellophyceae (Ostreococcus) were the dominant PPE in the upwelling-influenced waters, while members of the Chrysophyceae, Prymnesiophyceae, Pelagophyceae, and Prasinophyceae Clades VII and IX flourished in the oligotrophic South Pacific Subtropical Gyre. Our results suggest that, despite low numerical abundance in comparison to cyanobacteria, diverse members of PPE are significant contributors to carbon cycling across biogeochemically distinct regions of the SEP.Support for this work derived from U.S. National Science Foundation grants to C-MORE (EF-0424599; DMK) and OCE-1241263 (MJC). Additional support was received from the University of Hawai'i Denise B. Evans Research Fellowship in Oceanography (YMR), the Gordon and Betty Moore Foundation (DMK), and the Simons Foundation via the Simons Collaboration on Ocean Processes and Ecology (SCOPE: DJR, MJC, and DMK)

Towards a transformative understanding of the ocean’s biological pump: Priorities for future research - Report on the NSF Biology of the Biological Pump Workshop

NSF Biology of the Biological Pump Workshop, February 19–20, 2016 (Hyatt Place New Orleans, New Orleans, LA)The net transfer of organic matter from the surface to the deep ocean is a key function of ocean food webs. The combination of biological, physical, and chemical processes that contribute to and control this export is collectively known as the “biological pump”, and current estimates of the global magnitude of this export range from 5 – 12 Pg C yr-1. This material can be exported in dissolved or particulate form, and many of the biological processes that regulate the composition, quantity, timing, and distribution of this export are poorly understood or constrained. Export of organic material is of fundamental importance to the biological and chemical functioning of the ocean, supporting deep ocean food webs and controlling the vertical and horizontal segregation of elements throughout the ocean. Remineralization of exported organic matter in the upper mesopelagic zone provides nutrients for surface production, while material exported to depths of 1000 m or more is generally considered to be sequestered — i.e. out of contact with the atmosphere for centuries or longer. The ability to accurately model a system is a reflection of the degree to which the system is understood. In the case of export, semi-empirical and simple mechanistic models show a wide range of predictive skill. This is, in part, due to the sparseness of available data, which impedes our inability to accurately represent, or even include, all relevant processes (sometimes for legitimate computational reasons). Predictions will remain uncertain without improved understanding and parameterization of key biological processes affecting export.Funding for this workshop was provided by the National Science Foundation (NSF). Coordination and logistical support for this workshop was provided by the Ocean Carbon and Biogeochemistry (OCB) Program (www.us-ocb.org

Ocean‐Only FAFMIP: Understanding Regional Patterns of Ocean Heat Content and Dynamic Sea Level Change

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Interannual variability of primary production and dissolved organic nitrogen storage in the North Pacific Subtropical Gyre

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): G03019, doi:10.1029/2011JG001830.The upper ocean primary production measurements from the Hawaii Ocean Time series (HOT) at Station ALOHA in the North Pacific Subtropical Gyre showed substantial variability over the last two decades. The annual average primary production varied within a limited range over 1991–1998, significantly increased in 1999–2000 and then gradually decreased afterwards. This variability was investigated using a one-dimensional ecosystem model. The long-term HOT observations were used to constrain the model by prescribing physical forcings and lower boundary conditions and optimizing the model parameters against data using data assimilation. The model reproduced the general interannual pattern in the observed primary production, and mesoscale variability in vertical velocity was identified as a major contributing factor to the interannual variability in the simulation. Several strong upwelling events occurred in 1999, which brought up nitrate at rates several times higher than other years and elevated the model primary production. Our model results suggested a hypothesis for the observed interannual variability pattern of primary production at Station ALOHA: Part of the upwelled nitrate input in 1999 was converted to and accumulated as semilabile dissolved organic nitrogen (DON), and subsequent recycling of this semilabile DON supported enhanced primary productivity for the next several years as the semilabile DON perturbation was gradually removed via export.This work was supported in part by the Center for Microbial Oceanography, Research and Education (C-MORE) (NSF EF-0424599), Hawaii Ocean Time series program (NSF OCE09–26766), the Gordon and Betty Moore Foundation, and the Marine Biological Laboratory.2013-03-1

Epidemiology of mammary tumours in bitches under veterinary care in the UK in 2016

Background There is limited information on the epidemiology of canine mammary tumours. This study aimed to estimate the incidence and risk factors for mammary tumours in UK bitches. Methods A nested case–control study was conducted within VetCompass to estimate the frequency and risk factors for clinically diagnosed mammary tumours during 2016 (VetCompass study). A second case–control study explored further breed associations for cases confirmed histopathologically compared to the VetCompass controls (laboratory study). Multivariable logistic regression was used to evaluate associations between risk factors and mammary tumours. Results The incidence of mammary tumours was 1340.7/100,000 per year (95% confidence interval: 1198.1–1483.3). A total of 222 clinical cases (VetCompass study) and 915 laboratory cases (laboratory study) were compared to 1515 VetCompass controls in the two analyses. In the VetCompass study, Springer and Cocker Spaniels, Boxers, Staffordshire Bull Terriers and Lhasa Apsos had increased odds of developing mammary tumours. Neutering was associated with reduced odds, while odds increased with increasing age and a history of pseudopregnancy. In the laboratory study, increasing age was associated with greater odds of mammary tumours, and the breeds most at risk were similar to those identified in the VetCompass study. Limitations The timing of neutering was not consistently available. Comparing laboratory cases to VetCompass controls provided only exploratory evidence for the breed associations identified. Conclusions The study provides an update on the frequency of canine mammary tumours

Paired windward and leeward biogeochemical time series reveal consistent surface ocean CO₂ trends across the Hawaiian Ridge

Sustained time series have provided compelling evidence for progressive acidification of the surface oceans through exchange with the growing atmospheric reservoir of carbon dioxide. However, few long-term programs exist, and extrapolation of results from one site to larger oceanic expanses is hampered by the lack of spatial coverage inherent to Eulerian sampling. Since 1988, the Hawaii Ocean Time-series program has sampled CO₂ system variables nearly monthly at Station ALOHA, a deep ocean site windward and 115 km north of the island of Oahu. Surface measurements have also been made at Station Kahe, a leeward site 12 km from the island and on the opposite side of the Hawaiian Ridge. Despite having different physical settings, the sites exhibit identical rates of surface pCO₂ increase and hydrogen ion accumulation, suggesting that atmospheric forcing dominates over local dynamics in determining the CO₂ trend in the surface waters of the North Pacific subtropical gyre