Plant dispersal characteristics shape the relationship of diversity with area and isolation

Aim The relation of plant dispersal syndromes with insular species richness patters remains one of the challenges in island biogeography, especially as people have affected species distribution patterns. This study disentangles how dispersal syndromes influence the relationship of richness with area and isolation while also accounting for the human impact on island biodiversity. It builds on the potential of islands at the mesoscale and of similar origin to contribute to the ongoing discussion in island biogeography on what determines species richness and filtering. Location Denmark, 54 islands in the North and Baltic Sea. Taxon Vascular plants, including pteridophytes. Methods Generalized linear models (GLMs) and linear regressions are used to analyse how dispersal syndromes influence the relationships of species numbers with island area and isolation, as well as island inhabitation and human density, respectively. Results Species numbers, seed mass and the proportion of zoochore and anemochore species are positively related to island area while the share of water-dispersed species decreases with increasing area. Isolation is weakly related to mean seed mass but has no explaining power for species numbers and the presence of specific dispersal syndrome on the target islands. Species richness and seed mass were positively related to human presence. Main conclusions Human impact for centuries has not overwritten the strong relationship of species richness with area on the Danish Islands but is affecting the shape of this relationship. Island area constitutes a strong filter for different dispersal syndromes and leads to the assumption that heavier and animal-dispersed seeds are positively related to area due to the presence of more bird and mammal species. Human-induced loss of isolation caused by ongoing traffic and the connection of landmasses by bridges and ferries may be a reason for the overall low explanatory power of island isolation.publishedVersio

Plant dispersal characteristics shape the relationship of diversity with area and isolation

Aim This study disentangles how plant dispersal syndromes influence the relationship of species richness with area and isolation while also accounting for the human impact on island biodiversity. It builds on the potential of islands at the mesoscale and of similar origin to contribute to the ongoing discussion in island biogeography on what determines species richness and filtering. Location Denmark, 54 saltwater and brackish water islands in the North and Baltic Sea Taxon Vascular plants, including pteridophytes (ferns, clubmosses and horsetails) Methods Generalized linear models (GLMs) and linear regressions are used to analyse how dispersal syndromes influence the relationships of species numbers with island area and isolation, as well as island inhabitation and human density, respectively. Results Species numbers, as well as mean seed mass and the proportion of zoochore and anemochore species, are positively related to island area while the share of water-dispersed species decreases with increasing area. The slope of the regression line representing the species-area relationship (SAR) was 0.34 and lies within the common range for this relationship. Isolation is weakly related to mean seed mass but has no explaining power for species numbers and the presence of specific dispersal syndrome on the target islands. Species richness and seed mass was positively related to human presence. Main conclusions Human impact for centuries has not overwritten the strong relationship of species richness with area on the Danish Islands but is affecting the shape of this relationship. Island area constitutes a strong filter for different dispersal syndromes and leads to the assumption that heavier and animal-dispersed seeds are positively related to island area due to the presence of more bird and mammal species. Human-induced loss of isolation caused by ongoing traffic and the connection of landmasses by bridges and ferries may be a reason for the overall low explanatory power of island isolation. Higher species richness on inhabited islands may further be linked to higher habitat diversity in human modified landscapes.The data file (.xlsx file) can be opened in Excel or Libre Office. It might be easiest to access the data file in R as it can then be used in combination with the provided R code.The dataset consists of three parts: (I) Environmental data listing the 54 studied Danish Islands including island characteristics, (II) plant species occurrence data (presence/absence data) on these islands, and (III) trait data of vascular plants that form part of the study. Environmental data For all target islands, information on isolation to continental land masses, island area, and the number of island inhabitants were gathered. The exact geographic position and precise boundaries of the 54 target islands were determined in GIS. This allowed us to calculate isolation as the shortest distance to the nearest mainland (species pool; considering the largest islands Saelland, Vendsyssel-Thyto, and Fyn to be part of continental Denmark), and surface area of the individual islands. To account for human alterations we identified inhabited and uninhabited islands and calculated human density (number of island inhabitants per ha). The number of island inhabitants was compiled from Danmarks Statistik (2021) and for smaller islands, we used Google Earth images (© Google Earth 2021) to verify that no houses were present on the island (human density = 0). Danmarks Statistik (2021). www.statbank.dk/BEF4 (last accessed on 25.10.2021). Species occurrence data Species occurrence data was extracted from a comprehensive data set compiled by Erik Wessberg and co-workers since 1979. It became available in 2011 on the homepage of the Danish Botanical Society as a series of commented species lists, one for each of the islands or cluster of islands surveyed in total (Wessberg et al. 2011). Wessberg, E. et al. (2011). Homepage of the Danish Botanical Society, accessed 10 June 2012, https://botaniskforening.dk/botanik/ofloraer/. Trait data Trait information on seed mass (mg) and dispersal syndromes (zoochory, hydrochory, anemochory, and autochory) were gathered for the 1201 species found on 54 Danish islands from a set of databases: mainly Royal Botanic Gardens Kew (2016), LEDA database (Kleyer et al., 2008) and additionally Ecological Flora of The British Isles (Fitter & Peat, 1994), BiolFlor (Klotz, et al., 2002), BROT trait database for plant species of the Mediterranean Basin (Paula et al., 2009), and D³, The Dispersal and Diaspore Database (Hintze, et al. 2013). Gaps in the data (roughly 100 species) were filled, when possible, by interpolation based on the traits of other species of the same genus, and ferns and clubmosses were assigned the smallest seed mass value in the dataset. Fitter, A. H. & Peat, H. J. 1994. The Ecological Flora Database. Journal of Ecology 82, 415-425. Hintze, C., Heydel F, Hoppe C, Cunze S, König A & Tackenberg O. (2013). D³: The Dispersal and Diaspore Database - Baseline data and statistics on seed dispersal. – Perspectives in Plant Ecology and Evolutionary Syst., 15, 180-192. Kleyer, M., Bekker, R., Knevel, I., Bakker, J., Thompson, K., Sonnenschein, M., … Peco, B. (2008). The LEDA Traitbase: A database of life-history traits of Northwest European flora. Journal of Ecology, 96, 1266-1274 Klotz, S., Kühne, I., & Walter, D. S. (2002). BIOLFLOR - Eine Datenbank zu biologisch-ökologischen Merkmalen der Gefäßpflanzen in Deutschland. – Schriftenreihe für Vegetationskunde 38. Bonn: Bundesamt für Naturschutz. Paula, S., Arianoutsou, M., Kazanis, D., Tavsanoglu, Ç., Lloret, F., Buhk, C., Ojeda, F., Luna, B., Moreno, J. M., Rodrigo, A., Espelta, J. M., Palacio, S., Fernández-Santos, B., Fernandes, P. M., & Pausas, J.G. (2009). Fire-related traits for plant species of the Mediterranean Basin. Ecology, 90, 1420 Royal Botanic Gardens Kew. (2016). Seed Information Database (SID). Version 7.1. Available from: http://data.kew.org/sid/ (June 2016)

Putative adverse outcome pathways for female reproductive disorders to improve testing and regulation of chemicals

Modern living challenges female reproductive health. We are witnessing a rise in reproductive disorders and drop in birth rates across the world. The reasons for these manifestations are multifaceted and most likely include continuous exposure to an ever-increasing number of chemicals. The cause-effect relationships between chemical exposure and female reproductive disorders, however, have proven problematic to determine. This has made it difficult to assess the risks chemical exposures pose to a woman's reproductive development and function. To address this challenge, this review uses the adverse outcome pathway (AOP) concept to summarize current knowledge about how chemical exposure can affect female reproductive health. We have a special focus on effects on the ovaries, since they are essential for lifelong reproductive health in women, being the source of both oocytes and several reproductive hormones, including sex steroids. The AOP framework is widely accepted as a new tool for toxicological safety assessment that enables better use of mechanistic knowledge for regulatory purposes. AOPs equip assessors and regulators with a pragmatic network of linear cause-effect relationships, enabling the use of a wider range of test method data in chemical risk assessment and regulation. Based on current knowledge, we propose ten putative AOPs relevant for female reproductive disorders that can be further elaborated and potentially be included in the AOPwiki. This effort is an important step towards better safeguarding the reproductive health of all girls and women.Peer reviewe

Methicillin-resistant Staphylococcus aureus Clones, Western Australia

The emergence of multiple multidrug-resistant Panton-Valentine leukocidin–positive MRSA clones in the community is a major public health concern

Radiographs Reveal Exceptional Forelimb Strength in the Sabertooth Cat, Smilodon fatalis

Background: The sabertooth cat, Smilodon fatalis, was an enigmatic predator without a true living analog. Their elongate canine teeth were more vulnerable to fracture than those of modern felids, making it imperative for them to immobilize prey with their forelimbs when making a kill. As a result, their need for heavily muscled forelimbs likely exceeded that of modern felids and thus should be reflected in their skeletons. Previous studies on forelimb bones of S. fatalis found them to be relatively robust but did not quantify their ability to withstand loading. Methodology/Principal Findings: Using radiographs of the sabertooth cat, Smilodon fatalis, 28 extant felid species, and the larger, extinct American lion Panthera atrox, we measured cross-sectional properties of the humerus and femur to provide the first estimates of limb bone strength in bending and torsion. We found that the humeri of Smilodon were reinforced by cortical thickening to a greater degree than those observed in any living felid, or the much larger P. atrox. The femur of Smilodon also was thickened but not beyond the normal variation found in any other felid measured. Conclusions/Significance: Based on the cross-sectional properties of its humerus, we interpret that Smilodon was a powerful predator that differed from extant felids in its greater ability to subdue prey using the forelimbs. This enhanced forelimb strength was part of an adaptive complex driven by the need to minimize the struggles of prey in order to protec

Transmission Spectroscopy for the Warm Sub-Neptune HD 3167c: Evidence for Molecular Absorption and a Possible High-metallicity Atmosphere

We present a transmission spectrum for the warm (500−600 K) sub-Neptune HD 3167c obtained using the Hubble Space Telescope Wide Field Camera 3 infrared spectrograph. We combine these data, which span the 1.125–1.643 μm wavelength range, with broadband transit measurements made using Kepler/K2 (0.6–0.9 μm) and Spitzer/IRAC (4–5 μm). We find evidence for absorption by at least one of H₂O, HCN, CO₂, and CH₄ (Bayes factor 7.4; 2.5σ significance), although the data precision does not allow us to unambiguously discriminate between these molecules. The transmission spectrum rules out cloud-free hydrogen-dominated atmospheres with metallicities ≤100× solar at >5.8σ confidence. In contrast, good agreement with the data is obtained for cloud-free models assuming metallicities >700× solar. However, for retrieval analyses that include the effect of clouds, a much broader range of metallicities (including subsolar) is consistent with the data, due to the degeneracy with cloud-top pressure. Self-consistent chemistry models that account for photochemistry and vertical mixing are presented for the atmosphere of HD 3167c. The predictions of these models are broadly consistent with our abundance constraints, although this is primarily due to the large uncertainties on the latter. Interior structure models suggest that the core mass fraction is >40%, independent of a rock or water core composition, and independent of atmospheric envelope metallicity up to 1000× solar. We also report abundance measurements for 15 elements in the host star, showing that it has a very nearly solar composition

Acquired Resistance to KRAS (G12C) Inhibition in Cancer

BACKGROUND: Clinical trials of the KRAS inhibitors adagrasib and sotorasib have shown promising activity in cancers harboring KRAS glycine-to-cysteine amino acid substitutions at codon 12 (KRAS(G12C)). The mechanisms of acquired resistance to these therapies are currently unknown. METHODS: Among patients with KRAS(G12C) -mutant cancers treated with adagrasib monotherapy, we performed genomic and histologic analyses that compared pretreatment samples with those obtained after the development of resistance. Cell-based experiments were conducted to study mutations that confer resistance to KRAS(G12C) inhibitors. RESULTS: A total of 38 patients were included in this study: 27 with non-small-cell lung cancer, 10 with colorectal cancer, and 1 with appendiceal cancer. Putative mechanisms of resistance to adagrasib were detected in 17 patients (45% of the cohort), of whom 7 (18% of the cohort) had multiple coincident mechanisms. Acquired KRAS alterations included G12D/R/V/W, G13D, Q61H, R68S, H95D/Q/R, Y96C, and high-level amplification of the KRAS(G12C) allele. Acquired bypass mechanisms of resistance included MET amplification; activating mutations in NRAS, BRAF, MAP2K1, and RET; oncogenic fusions involving ALK, RET, BRAF, RAF1, and FGFR3; and loss-of-function mutations in NF1 and PTEN. In two of nine patients with lung adenocarcinoma for whom paired tissue-biopsy samples were available, histologic transformation to squamous-cell carcinoma was observed without identification of any other resistance mechanisms. Using an in vitro deep mutational scanning screen, we systematically defined the landscape of KRAS mutations that confer resistance to KRAS(G12C) inhibitors. CONCLUSIONS: Diverse genomic and histologic mechanisms impart resistance to covalent KRAS(G12C) inhibitors, and new therapeutic strategies are required to delay and overcome this drug resistance in patients with cancer. (Funded by Mirati Therapeutics and others; ClinicalTrials.gov number, NCT03785249.)

Nomenclature for kidney function and disease: report of a Kidney Disease:Improving Global Outcomes (KDIGO) Consensus Conference

The worldwide burden of kidney disease is rising, but public awareness remains limited, underscoring the need for more effective communication by stakeholders in the kidney health community. Despite this need for clarity, the nomenclature for describing kidney function and disease lacks uniformity. In June 2019, Kidney Disease: Improving Global Outcomes (KDIGO) convened a Consensus Conference with the goal of standardizing and refining the nomenclature used in the English language to describe kidney function and disease, and of developing a glossary that could be used in scientific publications. Guiding principles of the conference were that the revised nomenclature should be patient-centered, precise, and consistent with nomenclature used in the KDIGO guidelines. Conference attendees reached general consensus on the following recommendations: (i) to use "kidney" rather than "renal" or "nephro-" when referring to kidney disease and kidney function; (ii) to use "kidney failure" with appropriate descriptions of presence or absence of symptoms, signs, and treatment, rather than "end-stage kidney disease"; (iii) to use the KDIGO definition and classification of acute kidney diseases and disorders (AKD) and acute kidney injury (AKI), rather than alternative descriptions, to define and classify severity of AKD and AKI; (iv) to use the KDIGO definition and classification of chronic kidney disease (CKD) rather than alternative descriptions to define and classify severity of CKD; and (v) to use specific kidney measures, such as albuminuria or decreased glomerular filtration rate (GFR), rather than "abnormal" or "reduced" kidney function to describe alterations in kidney structure and function. A proposed 5-part glossary contains specific items for which there was general agreement. Conference attendees acknowledged limitations of the recommendations and glossary, but they considered standardization of scientific nomenclature to be essential for improving communication

Fusion of the Mycobacterium tuberculosis Antigen 85A to an Oligomerization Domain Enhances Its Immunogenicity in Both Mice and Non-Human Primates

To prevent important infectious diseases such as tuberculosis, malaria and HIV, vaccines inducing greater T cell responses are required. In this study, we investigated whether fusion of the M. tuberculosis antigen 85A to recently described adjuvant IMX313, a hybrid avian C4bp oligomerization domain, could increase T cell responses in pre-clinical vaccine model species. In mice, the fused antigen 85A showed consistent increases in CD4+ and CD8+ T cell responses after DNA and MVA vaccination. In rhesus macaques, higher IFN-γ responses were observed in animals vaccinated with MVA-Ag85A IMX313 after both primary and secondary immunizations. In both animal models, fusion to IMX313 induced a quantitative enhancement in the response without altering its quality: multifunctional cytokines were uniformly increased and differentiation into effector and memory T cell subsets was augmented rather than skewed. An extensive in vivo characterization suggests that IMX313 improves the initiation of immune responses as an increase in antigen 85A specific cells was observed as early as day 3 after vaccination. This report demonstrates that antigen multimerization using IMX313 is a simple and effective cross-species method to improve vaccine immunogenicity with potentially broad applicability