Fast imaging of live organisms with sculpted light sheets.

Light-sheet microscopy is an increasingly popular technique in the life sciences due to its fast 3D imaging capability of fluorescent samples with low photo toxicity compared to confocal methods. In this work we present a new, fast, flexible and simple to implement method to optimize the illumination light-sheet to the requirement at hand. A telescope composed of two electrically tuneable lenses enables us to define thickness and position of the light-sheet independently but accurately within milliseconds, and therefore optimize image quality of the features of interest interactively. We demonstrated the practical benefit of this technique by 1) assembling large field of views from tiled single exposure each with individually optimized illumination settings; 2) sculpting the light-sheet to trace complex sample shapes within single exposures. This technique proved compatible with confocal line scanning detection, further improving image contrast and resolution. Finally, we determined the effect of light-sheet optimization in the context of scattering tissue, devising procedures for balancing image quality, field of view and acquisition speed.This work was funded by grants from the Wellcome Trust, the Medical Research Council, the CamBridgeSense network, Carlsberg Foundation, the Alzheimer Research UK Trust and the Biotechnology and Biological Sciences Research Council and the Wolfson Foundation.This is the final version of the article. It first appeared at http://dx.doi.org/10.1038/srep09385

Species-Specific Effects of Passive Warming in an Antarctic Moss System

Polar systems are experiencing rapid climate change and the high sensitivity of these Arctic and Antarctic ecosystems make them especially vulnerable to accelerated ecological transformation. In Antarctica, warming results in a mosaic of ice-free terrestrial habitats dominated by a diverse assemblage of cryptogamic plants (i.e. mosses and lichens). Although these plants provide key habitat for a wide array of microorganisms and invertebrates, we have little understanding of the interaction between trophic levels in this terrestrial ecosystem and whether there are functional effects of plant species on higher trophic levels that may alter with warming. Here, we used open top chambers on Fildes Peninsula, King George Island, Antarctica, to examine the effects of passive warming and moss species on the abiotic environment and ultimately on higher trophic levels. For the dominant mosses, Polytrichastrum alpinum and Sanionia georgicouncinata, we found species-specific effects on the abiotic environment, including moss canopy temperature and soil moisture. In addition, we found distinct shifts in sexual expression in P. alpinum plants under warming compared to mosses without warming, and invertebrate communities in this moss species were strongly correlated with plant reproduction. Mosses under warming had substantially larger total invertebrate communities, and some invertebrate taxa were influenced differentially by moss species. However, warmed moss plants showed lower fungal biomass than control moss plants, and fungal biomass differed between moss species. Our results indicate that continued warming may impact the reproductive output of Antarctic moss species, potentially altering terrestrial ecosystems dynamics from the bottom up. Understanding these effects requires clarifying the foundational, mechanistic role that individual plant species play in mediating complex interactions in Antarctica\u27s terrestrial food webs

Delayed chilling appears to counteract flowering advances of apricot in southern UK

Temperatures are rising across the globe, and the UK is no exception. Spring phenology of perennial fruit crops is to a large extent determined by temperature during effective chilling (endo-dormancy) and heat accumulation (eco-dormancy) periods. We used the apricot flowering records of the UK National Fruit Collections (NFC) to determine the influence of temperature trends over recent decades (1960 to 2014) on apricot (Prunus armeniaca L.) flowering time. Using Partial Least Squares (PLS) regression, we determined the respective periods for calculating chill and heat accumulation. Results suggested intervals between September 27th and February 26th and between December 31st and April 12th as the effective chilling and warming periods, respectively. Flowering time was correlated with temperature during both periods, with warming during chilling corresponding to flowering delays by 4.82 d°C-1, while warming during heat accumulation was associated with bloom advances by 9.85 d°C-1. Heat accumulation started after accumulating 62.7 ± 5.6 Chill Portions, and flowering occurred after a further 3744 ± 1538 Growing Degree Hours (above a base temperature of 4°C, with optimal growth at 26°C). When examining the time series, the increase in temperature during the chilling period did not appear to decrease overall chill accumulation during the chilling period but to delay the onset of chill accumulation and the completion of the the average chill accumulation necessary to start heat accumulation. The resulting delay in heat responsiveness appeared to weaken the phenology-advancing effect of spring warming. These processes may explain why apricot flowering time remained relatively unchanged despite significant temperature increases. A consequence of this may be a reduction of frost risk for early flowering crops such as apricot in the UK

Impact of changing climate on bryophyte contributions to terrestrial water, carbon, and nitrogen cycles

Bryophytes, including the lineages of mosses, liverworts, and hornworts, are the second-largest photoautotroph group on Earth. Recent work across terrestrial ecosystems has highlighted how bryophytes retain and control water, fix substantial amounts of carbon (C), and contribute to nitrogen (N) cycles in forests (boreal, temperate, and tropical), tundra, peatlands, grasslands, and deserts. Understanding how changing climate affects bryophyte contributions to global cycles in different ecosystems is of primary importance. However, because of their small physical size, bryophytes have been largely ignored in research on water, C, and N cycles at global scales. Here, we review the literature on how bryophytes influence global biogeochemical cycles, and we highlight that while some aspects of global change represent critical tipping points for survival, bryophytes may also buffer many ecosystems from change due to their capacity for water, C, and N uptake and storage. However, as the thresholds of resistance of bryophytes to temperature and precipitation regime changes are mostly unknown, it is challenging to predict how long this buffering capacity will remain functional. Furthermore, as ecosystems shift their global distribution in response to changing climate, the size of different bryophyte-influenced biomes will change, resulting in shifts in the magnitude of bryophyte impacts on global ecosystem functions

Les progrès dans la réalisation de la classification quantitative de la psychopathologie

Shortcomings of approaches to classifying psychopathology based on expert consensus have given rise to contemporary efforts to classify psychopathology quantitatively. In this paper, we review progress in achieving a quantitative and empirical classification of psychopathology. A substantial empirical literature indicates that psychopathology is generally more dimensional than categorical. When the discreteness versus continuity of psychopathology is treated as a research question, as opposed to being decided as a matter of tradition, the evidence clearly supports the hypothesis of continuity. In addition, a related body of literature shows how psychopathology dimensions can be arranged in a hierarchy, ranging from very broad "spectrum level'' dimensions, to specific and narrow clusters of symptoms. In this way, a quantitative approach solves the "problem of comorbidity'' by explicitly modeling patterns of co-occurrence among signs and symptoms within a detailed and variegated hierarchy of dimensional concepts with direct clinical utility. Indeed, extensive evidence pertaining to the dimensional and hierarchical structure of psychopathology has led to the formation of the Hierarchical Taxonomy of Psychopathology (HiTOP) Consortium. This is a group of 70 investigators working together to study empirical classification of psychopathology. In this paper, we describe the aims and current foci of the HiTOP Consortium. These aims pertain to continued research on the empirical organization of psychopathology; the connection between personality and psychopathology; the utility of empirically based psychopathology constructs in both research and the clinic; and the development of novel and comprehensive models and corresponding assessment instruments for psychopathology constructs derived from an empirical approach. (C) 2020 Published by Elsevier Masson SAS

Avian Dispersal Networks, Metacommunity Structure, and Bryophyte Community Assemblages

Spatial processes have a profound influence on the structure and function of community assemblages. The dispersal of organisms from their place of origin to the location in which they live out their reproductive life is particularly important for plant communities, which generally cannot adjust their location post-germination. Connection between communities at a landscape scale can also influence species persistence, local and regional diversity, and functional turnover at the metacommunity scale. Animals have been shown to disproportionately deposit propagules in particular microsites in many plant species, facilitating the arrival of plants to appropriate niche-space. Birds are particularly notable seed dispersers, given their ability to fly long distances and their behavioral inclination toward using specific microsites within their habitat for foraging and nest building. Despite the known influence of animal behavior on plant dispersal outcomes, little work has been done to investigate the role of animals in dispersing bryophyte (moss, hornwort, liverwort) propagules. In order to examine how birds may affect bryophyte dispersal, I conducted two studies focused on understanding how bird species identity and behavior influence the bryophyte propagules they carry. In addition, I conducted a study to understand how metacommunity structure across a landscape can be influenced by focal spatial scale. In the first study I examined how bird species and foraging behavior impact the topical load of bryophyte spores found on bird surfaces. In order to determine this, I captured passerine birds in mist nets and swabbed them for spores. I found that spores were more abundant on passerine tails than legs, and that overall spore load was higher on larger birds. Thrushes in particular carried more spores than other groups overall. Bark and foliage foraging birds had more spores on their tails than ground foraging birds. From these samples I was able to germinate 242 individual bryophytes, demonstrating that carried spores were readily viable. In the second study, I examined species-specific relationships between bryophytes and the birds carrying them. Swabs from captured birds were grown in the lab and bryophyte species were determined genetically. I used a bipartite network approach to determine the level of specialization of associations within the overall network, as well as how specialized the avian associations of individual bryophyte species were. I then used the phylogenetic distance of bryophytes found on individual bird species in order to assess how specialized the assemblages on a given bird species were compared with a null, random model. I found that bryophyte associations with birds were nonrandom, and that the extent to which those associations were specialized differed by bird foraging behavior. In addition, I found that the diversity of propagules on bird surfaces was significantly nonrandom, with the exception of those bryophytes found on Spotted Towhees. In the final study, I examined the metacommunity structure of bryophytes at both patch and landscape scales across a relict landscape of Valdivian forest in North-Central Chile. This landscape consists of distinct natural patches of forest maintained by coastal fog deposition, surrounding by a dry matrix inhospitable to patch-resident bryophytes. I used quadrats to sample bryophyte species abundance at the base and at breast height of ten trees in each patch, in 20 patches across the landscape. I found that when considering the whole park as one metacommunity, the bryophyte community exhibited a Gleasonian structure, in which individual species turnover was idiosyncratic. Considering assemblages from both heights separately, a Clemenstian pattern was observed, suggesting that within each height compartment, turnover of species tended to happen together. Treating each patch as a metacommunity of individual community trees resulted in a wide variety of metacommunity structures across the park that did not reflect either longitude or latitude. Low canopy cover and small DBH resulted in structures reflecting random species loss. Underlying Shannon diversity did not explain differences in the observed structures. This dissertation provides the first evidence that passerine birds carry bryophyte propagules, and that their individual species use of habitat and foraging behaviors are likely to influence the number and diversity of the bryophytes they are dispersing. This has implications for understanding disjunct species and genetic distributions observed in bryophytes that to date have lacked an explanatory mechanism for long distance directed dispersal. In addition, understanding how avian behavior may disperse propagules at a local to regional scale may provide better insight into the trajectory of bryophyte recruitment on impacted landscapes. I also found that assignation of metacommunity structure is sensitive to spatial scale in bryophytes. Together, these findings increase our understanding of the role that spatial processes play in forming bryophyte communities

Germination of bryophytes

Contains the germination events for samples taken from birds

Species-Specific Interactions in Avian–Bryophyte Dispersal Networks

Studies from seed plants have shown that animal dispersal fundamentally alters the success of plant dispersal, shaping community composition through time. Our understanding of this phenomenon in spore plants is comparatively limited. Though little is known about species-specific dispersal relationships between passerine birds and bryophytes, birds are particularly attractive as a potential bryophyte dispersal vector given their highly vagile nature as well as their association with bryophytes when foraging and building nests. We captured birds in Gifford Pinchot National Forest to sample their legs and tails for bryophyte propagules. We found 24 bryophyte species across 34 bird species. We examined the level of interaction specificity: (i) within the overall network to assess community level patterns; and (ii) at the plant species level to determine the effect of bird behaviour on network structure. We found that avian– bryophyte associations are constrained within the network, with species-specific and foraging guild effects on the variety of bryophytes found on bird species. Our findings suggest that diffuse bird–bryophyte dispersal networks are likely to be common in habitats where birds readily encounter bryophytes and that further work aimed at understanding individual bird–bryophyte species relationships may prove valuable in determining nuance within this newly described dispersal mechanism