Momentum transport processes in the stratiform regions of mesoscale convective systems over the western Pacific warm pool

This is the publisher's version, also available electronically from http://onlinelibrary.wiley.com/doi/10.1256/qj.04.141/abstract.Momentum transport by the stratiform components of mesoscale convective systems (MCSs) during the Tropical Ocean–Global Atmosphere Coupled Ocean–Atmosphere Response Experiment in December 1992 is investigated using a cloud-resolving model. The mesoscale momentum transport by the stratiform regions of MCSs is examined in two distinct large-scale flow regimes associated with the intraseasonal oscillation over the western Pacific warm pool. Model simulations for 14 December 1992 characterize the ‘westerly onset’ period, which has relatively weak low-level westerlies with easterlies above. Simulations for 23–24 December represent the ‘strong westerly’ regime, when westerlies extend from the upper troposphere to the surface, with a jet 2–3 km above the surface. In the westerly onset simulation, the extensive stratiform region of a MCS contained a broad region of descent that transported easterly momentum associated with the mid-level easterly jet downward. Thus, the stratiform regions acted as a negative feedback to decrease the large-scale mean westerly momentum developing at low levels. In the strong westerly regime, the mesoscale downward air motion in the stratiform regions of large MCSs transported westerly momentum downward and thus acted as a positive feedback, strengthening the already strong westerly momentum at low levels. Momentum fluxes by the mesoscale stratiform region downdraughts are shown to have a systematic and measurable impact on the large-scale momentum budget. Copyright © 2006 Royal Meteorological Society

The CBLAST-Hurricane program and the next-generation fully coupled atmosphere–wave–ocean models for hurricane research and prediction

Author Posting. © American Meteorological Society, 2007. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 88 (2007): 311-317, doi:10.1175/bams-88-3-311.The record-setting 2005 hurricane season has highlighted the urgent need for a better understanding of the factors that contribute to hurricane intensity, and for the development of corresponding advanced hurricane prediction models to improve intensity forecasts. The lack of skill in present forecasts of hurricane intensity may be attributed, in part, to deficiencies in the current prediction models—insufficient grid resolution, inadequate surface and boundary-layer formulations, and the lack of full coupling to a dynamic ocean. The extreme high winds, intense rainfall, large ocean waves, and copious sea spray in hurricanes push the surface-exchange parameters for temperature, water vapor, and momentum into untested regimes. The Coupled Boundary Layer Air–Sea Transfer (CBLAST)-Hurricane program is aimed at developing improved parameterizations using observations from the CBLAST-Hurricane field program that will be suitable for the next generation of hurricane-prediction models. The most innovative aspect of the CBLAST-Hurricane modeling effort is the development and testing of a fully coupled atmosphere–wave–ocean modeling system that is capable of resolving the eye and eyewall at ~1-km grid resolution, which is consistent with a key recommendation for the next-generation hurricane-prediction models by the NOAA Science Advisor Board Hurricane Intensity Research Working Group. It is also the National Centers for Environmental Prediction (NCEP) plan for the new Hurricane Weather Research and Forecasting (HWRF) model to be implemented operationally in 2007–08.The CBLAST-Hurricane is a research program supported by a departmental research initiative at the Office of Naval Research (ONR). The research is supported by ONR Research Grants N00014-01-1-0156, N00014-04-1-0109, N00014-01-F-0052, and SBIR for the EM-APEX development and deployment

Sea State Based Estimation of White Cap Fraction: Implications for Primary Marine Aerosol Fluxes

Oceanic whitecaps (hereafter, W) or the characteristic whiteness of the sea foam is an important feature for predicting exchange of gases, sea spray aerosols (SSAs), heat and momentum transfer between the ocean and the atmosphere at the air-sea interface. Due to its increased surface emission and brightness temperature, whitecaps are critical for satellite retrievals of ocean albedo, ocean color, ocean surface wind vectors from satellite borne radiometer and microwave instruments. Most of the existing models predict W using wind speed and sea surface temperature (SST). However, numerous publications have pointed out that there are large uncertainties in the predicted W and using parameterizations based on wind-wave state can improve the precision of the predicted W. Here, we integrate the University of Miami Wave Model - 2.0 (UMWM) in Goddard Earth Observing System (GEOS) and use wave diagnostics to predict W. We choose the year 2006 for our global UMWM/GEOS runs because of the availability of W dataset from satellite observations. We run UMWM/GEOS at 0.5o x 0.5o by replaying to MERRA2 meteorology and evaluate the wave diagnostics using measurements from fixed buoys and satellite altimeters. We use three different parameterizations for W based on: 1) Reynolds number, 2) wave dissipation energy, and 3) volume of air entrained by breaking waves. We compare our results of W with previous studies and also with the satellite based observational dataset. Predicting W is important for understanding the processes at the air-sea interface. Therefore, this work is a step further in improving the uncertainties in the aerosol and atmospheric chemistry modules of the global models

An ocean coupling potential intensity index for tropical cyclones

© American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 40 (2013): 1878–1882, doi:10.1002/grl.50091.Timely and accurate forecasts of tropical cyclones (TCs, i.e., hurricanes and typhoons) are of great importance for risk mitigation. Although in the past two decades there has been steady improvement in track prediction, improvement on intensity prediction is still highly challenging. Cooling of the upper ocean by TC-induced mixing is an important process that impacts TC intensity. Based on detail in situ air-deployed ocean and atmospheric measurement pairs collected during the Impact of Typhoons on the Ocean in the Pacific (ITOP) field campaign, we modify the widely used Sea Surface Temperature Potential Intensity (SST_PI) index by including information from the subsurface ocean temperature profile to form a new Ocean coupling Potential Intensity (OC_PI) index. Using OC_PI as a TC maximum intensity predictor and applied to a 14 year (1998–2011) western North Pacific TC archive, OC_PI reduces SST_PI-based overestimation of archived maximum intensity by more than 50% and increases the correlation of maximum intensity estimation from r2 = 0.08 to 0.31. For slow-moving TCs that cause the greatest cooling, r2 increases to 0.56 and the root-mean square error in maximum intensity is 11 m s−1. As OC_PI can more realistically characterize the ocean contribution to TC intensity, it thus serves as an effective new index to improve estimation and prediction of TC maximum intensity.This work is supported by Taiwan’s National Science Council and National Taiwan University (grant numbers: NSC 101- 2111-M-002-002-MY2; NSC 101-2628-M-002-001-MY4; 102R7803) and US Office of Naval Research (ONR) under the Impact of Typhoons on Pacific (ITOP) program. PB’s support is provided by ONR under PE 0601153N through NRL Contract N00173-10-C-6019

Working group 3: What are and how do we measure the pros and cons of existing approaches?

WG3 discussed both the pros and cons of existing schemes as well as metrics to measure relative advantages and disadvantages. We first provide a list of the current operational techniques and their respective advantages and disadvantages that were discussed in the WG. We do not claim that the list is complete, and we note that the pros and cons are neither exhaustive nor quantitative. Nevertheless, it may be useful to note the WG’s consensus on the general advantages and disadvantages of the most commonly-used schemes. We then list our recommendations for evaluating model uncertainty schemes. At the end is a short list pertaining to recommendations for further development of methods to represent model uncertainty

Lineage Divergence and Historical Gene Flow in the Chinese Horseshoe Bat (Rhinolophus sinicus)

PMCID: PMC3581519This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Ocean convergence and the dispersion of flotsam

Floating oil, plastics, and marine organisms are continually redistributed by ocean surface currents. Prediction of their resulting distribution on the surface is a fundamental, long-standing, and practically important problem. The dominant paradigm is dispersion within the dynamical context of a nondivergent flow: objects initially close together will on average spread apart but the area of surface patches of material does not change. Although this paradigm is likely valid at mesoscales, larger than 100 km in horizontal scale, recent theoretical studies of submesoscales (less than ∼10 km) predict strong surface convergences and downwelling associated with horizontal density fronts and cyclonic vortices. Here we show that such structures can dramatically concentrate floating material. More than half of an array of ∼200 surface drifters covering ∼20 × 20 km2 converged into a 60 × 60 m region within a week, a factor of more than 105 decrease in area, before slowly dispersing. As predicted, the convergence occurred at density fronts and with cyclonic vorticity. A zipperlike structure may play an important role. Cyclonic vorticity and vertical velocity reached 0.001 s−1 and 0.01 ms−1, respectively, which is much larger than usually inferred. This suggests a paradigm in which nearby objects form submesoscale clusters, and these clusters then spread apart. Together, these effects set both the overall extent and the finescale texture of a patch of floating material. Material concentrated at submesoscale convergences can create unique communities of organisms, amplify impacts of toxic material, and create opportunities to more efficiently recover such material

Ocean convergence and the dispersion of flotsam

Floating oil, plastics, and marine organisms are continually redistributed by ocean surface currents. Prediction of their resulting distribution on the surface is a fundamental, long-standing, and practically important problem. The dominant paradigm is dispersion within the dynamical context of a nondivergent flow: objects initially close together will on average spread apart but the area of surface patches of material does not change. Although this paradigm is likely valid at mesoscales, larger than 100 km in horizontal scale, recent theoretical studies of submesoscales (less than ∼10 km) predict strong surface convergences and downwelling associated with horizontal density fronts and cyclonic vortices. Here we show that such structures can dramatically concentrate floating material. More than half of an array of ∼200 surface drifters covering ∼20 × 20 km2 converged into a 60 × 60 m region within a week, a factor of more than 105 decrease in area, before slowly dispersing. As predicted, the convergence occurred at density fronts and with cyclonic vorticity. A zipperlike structure may play an important role. Cyclonic vorticity and vertical velocity reached 0.001 s−1 and 0.01 ms−1, respectively, which is much larger than usually inferred. This suggests a paradigm in which nearby objects form submesoscale clusters, and these clusters then spread apart. Together, these effects set both the overall extent and the finescale texture of a patch of floating material. Material concentrated at submesoscale convergences can create unique communities of organisms, amplify impacts of toxic material, and create opportunities to more efficiently recover such material

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

Elucidating virus-host interactions responsible for HIV-1 transmission is important for advancing HIV-1 prevention strategies. To this end, single genome amplification (SGA) and sequencing of HIV-1 within the context of a model of random virus evolution has made possible for the first time an unambiguous identification of transmitted/founder viruses and a precise estimation of their numbers. Here, we applied this approach to HIV-1 env analyses in a cohort of acutely infected men who have sex with men (MSM) and found that a high proportion (10 of 28; 36%) had been productively infected by more than one virus. In subjects with multivariant transmission, the minimum number of transmitted viruses ranged from 2 to 10 with viral recombination leading to rapid and extensive genetic shuffling among virus lineages. A combined analysis of these results, together with recently published findings based on identical SGA methods in largely heterosexual (HSX) cohorts, revealed a significantly higher frequency of multivariant transmission in MSM than in HSX [19 of 50 subjects (38%) versus 34 of 175 subjects (19%); Fisher's exact p = 0.008]. To further evaluate the SGA strategy for identifying transmitted/founder viruses, we analyzed 239 overlapping 5′ and 3′ half genome or env-only sequences from plasma viral RNA (vRNA) and blood mononuclear cell DNA in an MSM subject who had a particularly well-documented virus exposure history 3–6 days before symptom onset and 14–17 days before peak plasma viremia (47,600,000 vRNA molecules/ml). All 239 sequences coalesced to a single transmitted/founder virus genome in a time frame consistent with the clinical history, and a molecular clone of this genome encoded replication competent virus in accord with model predictions. Higher multiplicity of HIV-1 infection in MSM compared with HSX is consistent with the demonstrably higher epidemiological risk of virus acquisition in MSM and could indicate a greater challenge for HIV-1 vaccines than previously recognized