A Survey on Compiler Autotuning using Machine Learning

Since the mid-1990s, researchers have been trying to use machine-learning based approaches to solve a number of different compiler optimization problems. These techniques primarily enhance the quality of the obtained results and, more importantly, make it feasible to tackle two main compiler optimization problems: optimization selection (choosing which optimizations to apply) and phase-ordering (choosing the order of applying optimizations). The compiler optimization space continues to grow due to the advancement of applications, increasing number of compiler optimizations, and new target architectures. Generic optimization passes in compilers cannot fully leverage newly introduced optimizations and, therefore, cannot keep up with the pace of increasing options. This survey summarizes and classifies the recent advances in using machine learning for the compiler optimization field, particularly on the two major problems of (1) selecting the best optimizations and (2) the phase-ordering of optimizations. The survey highlights the approaches taken so far, the obtained results, the fine-grain classification among different approaches and finally, the influential papers of the field.Comment: version 5.0 (updated on September 2018)- Preprint Version For our Accepted Journal @ ACM CSUR 2018 (42 pages) - This survey will be updated quarterly here (Send me your new published papers to be added in the subsequent version) History: Received November 2016; Revised August 2017; Revised February 2018; Accepted March 2018

The utility of Google Trends data to examine interest in cancer screening

OBJECTIVES: We examined the utility of January 2004 to April 2014 Google Trends data from information searches for cancer screenings and preparations as a complement to population screening data, which are traditionally estimated through costly population-level surveys. SETTING: State-level data across the USA. PARTICIPANTS: Persons who searched for terms related to cancer screening using Google, and persons who participated in the Behavioral Risk Factor Surveillance System (BRFSS). PRIMARY AND SECONDARY OUTCOME MEASURES: (1) State-level Google Trends data, providing relative search volume (RSV) data scaled to the highest search proportion per week (RSV100) for search terms over time since 2004 and across different geographical locations. (2) RSV of new screening tests, free/low-cost screening for breast and colorectal cancer, and new preparations for colonoscopy (Prepopik). (3) State-level breast, cervical, colorectal and prostate cancer screening rates. RESULTS: Correlations between Google Trends and BRFSS data ranged from 0.55 for ever having had a colonoscopy to 0.14 for having a Pap smear within the past 3 years. Free/low-cost mammography and colonoscopy showed higher RSV during their respective cancer awareness months. RSV for Miralax remained stable, while interest in Prepopik increased over time. RSV for lung cancer screening, virtual colonoscopy and three-dimensional mammography was low. CONCLUSIONS: Google Trends data provides enormous scientific possibilities, but are not a suitable substitute for, but may complement, traditional data collection and analysis about cancer screening and related interests

Sea surface temperature patterns on the West Florida Shelf using growing hierarchical self-organizing maps

Author Posting. © American Meteorological Society 2006. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 23 (2006): 325–338, doi:10.1175/JTECH1848.1.Neural network analyses based on the self-organizing map (SOM) and the growing hierarchical self-organizing map (GHSOM) are used to examine patterns of the sea surface temperature (SST) variability on the West Florida Shelf from time series of daily SST maps from 1998 to 2002. Four characteristic SST patterns are extracted in the first-layer GHSOM array: winter and summer season patterns, and two transitional patterns. Three of them are further expanded in the second layer, yielding more detailed structures in these seasons. The winter pattern is one of low SST, with isotherms aligned approximately along isobaths. The summer pattern is one of high SST distributed in a horizontally uniform manner. The spring transition includes a midshelf cold tongue. Similar analyses performed on SST anomaly data provide further details of these seasonally varying patterns. It is demonstrated that the GHSOM analysis is more effective in extracting the inherent SST patterns than the widely used EOF method. The underlying patterns in a dataset can be visualized in the SOM array in the same form as the original data, while they can only be expressed in anomaly form in the EOF analysis. Some important features, such as asymmetric SST anomaly patterns of winter/summer and cold/warm tongues, can be revealed by the SOM array but cannot be identified in the lowest mode EOF patterns. Also, unlike the EOF or SOM techniques, the hierarchical structure in the input data can be extracted by the GHSOM analysis.Support was provided by the Office of Naval Research under Grant N00014-98-1-0158 for observations and modeling of the west Florida continental shelf circulation and Grant N00014-02-1-0972 for the Southeast Atlantic Coastal Ocean Observing System

Targeting sexual health services in primary care: a systematic review of the psychosocial correlates of adverse sexual health outcomes reported in probability surveys of women of reproductive age

BACKGROUND: Women using primary care vary in need for sexually transmitted infections (STIs) testing and contraception. Psychosocial correlates of these needs may be useful for targeting services. We undertook a systematic review to identify psychosocial correlates of STI acquisition, unplanned pregnancy (UP), abortion and risky sexual behaviours in general population samples of women of reproductive age. METHODS: We searched bibliographic databases for probability surveys of women aged 16-44years in the European Union, USA, Canada, Australia, UK or New Zealand undertaken January 1994-January 2014. RESULTS: Eleven papers were included. Unplanned pregnancy was associated with smoking, depression, being single and sexual debut <16years. Abortion was associated with lack of closeness to parents, leaving home at an early age, and relationship break-up. Multiple partnerships were associated with intensity of marijuana and alcohol use, and smoking. STI diagnosis was associated with relationship break-up and younger partners. Non-use of contraception was associated with smoking, obesity, relationship status, sedentary lifestyles, fatalistic pregnancy attitudes and lower alcohol use. Condom non-use was higher (at first sex) with partners 5+years older and lower (at last sex) in less stable partnerships. CONCLUSION: Psychosocial variables, particularly relationship status and smoking, may help identify women in primary care for STI testing and contraception advice and supply

Evaluación de pacientes con fractura de radio distal tratados con fijación percutánea

En fracturas del radio distal existe una tendencia hacia la reducción abierta y fijación interna, sin embargo, el tratamiento mediante reducción cerrada y enclavamiento percutáneo continúa ofreciendo buenos resultados pero es necesaria una terapia física y rehabilitación temprana y adecuada. Material y métodos: Evaluamos a pacientes con fractura de radio distal tratados mediante reducción por maniobras y enclavamiento percutáneo, utilizamos escalas clínicas funcionales como la escala de DASH, la escala de muñeca de la Clínica Mayo y Escala Visual Análoga para valorar dolor. Los resultados de los pacientes fueron comparados a las 12 y 24 semanas. Así mismo comparamos a pacientes con o sin rehabilitación. Resultados: se evaluó a 60 pacientes con la escala DASH, en pacientes con rehabilitación obtuvieron 4.3 puntos, mientras que sin rehabilitación fue de 10.5 puntos (p = 0.00001), en la escala de la Clínica Mayo con rehabilitación tuvieron 86.7 puntos y sin rehabilitación tuvieron 77.8 puntos (p = 0.00001). El EVA no fue significativo. Conclusión: Todos los pacientes mostraron mejoría en sus escalas de evaluación clínica. Sin embargo, al comparar a pacientes con rehabilitación y sin rehabilitación la diferencia fue mayor en la escala de la Clínica Mayo y en la escala de DAS

Vegetative Change on South Padre Island, Texas, over Twenty Years and Evaluation of Multispectral Videography in Determining Vegetative Cover and Species Identity

A comparative vegetation analysis of an island-wide transect of South Padre Island, Texas, was conducted in 1997 using aerial multispectral digital videography and line intercept ground truth techniques to assess the usefulness of videography in estimating vegetative cover and species identifications. Ground truth data were used to assess vegetative change occurring in the 20 years since the report of Judd et al. (1977) on the vegetation of South Padre Island. Estimates of total cover by ground truth and remote sensing techniques were similar (2.45% difference) on South Padre Island. Thus, airborne multispectral digital videography is an effective technique for assessing changes in total vegetative cover of Texas barrier islands. This technique will be an effective tool for documenting changes in total cover on barrier islands due to natural perturbations such as hurricanes and human disturbances including vehicular traffic. Imagery obtained at altitudes of 200 m or greater did not permit discrimination of dominant species in each of an island\u27s topographic zones. However, acquisition of imagery at a time of the year when dominant species are in specific phenological stages, such as flowering, and at a lower altitude may facilitate their recognition. Comparison of data from a single trans-island transect in 1997 with data from three trans-island transects and 18 transects across the foreshore, backshore, and primary dunes in 1977 suggests that there has been a marked decrease in species richness of the backshore and primary dune zones of South Padre Island. There also was a change in dominant species in the backshore zone. These changes in species richness and dominance may be largely attributable to vehicular traffic in these zones. - Un análisis comparativo de la vegetación de un transecto transinsular de la isla South Padre en el estado de Texas fue realizado en 1997 usando videografía aérea multiesprectral digital y técnicas de validación de intercepción linear terrestre para evaluar la utilidad de la videografía en la estimación de la cobertura vegetal e identificación de especies. Los datos de estudios de validación terrestre fueron utilizados para evaluar el cambio vegetativo que ocurrió durante 20 años después del informe de Judd et al (1977) sobre la vegetación de la isla South Padre. Las estimaciones de la cobertura total mediante técnicas de validación terrestres y de medición remota fueron similares (2.45% de diferencia) en la isla South Padre. Por lo tanto, la videografía multiesprectral digital aérea se considera una técnica eficaz para evaluar cambios en la cobertura vegetal de las islas barrera de Texas. Esta técnica será una herramienta efectiva para documentar los cambios de cobertura total en las islas barrera debido a las perturbaciones naturales tales como huracanes y disturbios humanos como tráfico vehicular. Las imágenes obtenidas en altitudes de 200 metros o mayores no permitieron la discriminación de las especies dominantes de las varias zonas topográficas de una isla. Sin embargo, la adquisición de imágenes de una época del año en que las especies dominantes están en etapas fenológicas específicas, tales como la floración, y desde una altitud menor, puede facilitar su reconocimiento. Al comparar datos de un transecto transinsular de 1977 con los de tres transectos transinsulares y de 18 transectos correspondientes a la parte frontal, trasera, y de las dunas primarias de la isla en 1977, se sugiere que ha habido una marcada disminución en la riqueza de especies en la parte trasera y en la zona de dunas primarias de la isla South Padre. También hubo un cambio de especies dominantes en la zona trasera. Estos cambios en la riqueza y dominancia de especies pueden ser atribuidos en gran parte al tráfico vehicular en estas zonas

A detailed characterization of the Saharan dust collected during the Fennec campaign in 2011: in situ ground-based and laboratory measurements

Millions of tons of mineral dust are lifted by the wind from arid surfaces and transported around the globe every year. The physical and chemical properties of the mineral dust are needed to better constrain remote sensing observations and are of fundamental importance for the understanding of dust atmospheric processes. Ground-based in situ measurements and in situ filter collection of Saharan dust were obtained during the Fennec campaign in the central Sahara in 2011. This paper presents results of the absorption and scattering coefficients, and hence single scattering albedo (SSA), of the Saharan dust measured in real time during the last period of the campaign and subsequent laboratory analysis of the dust samples collected in two supersites, SS1 and SS2, in Algeria and in Mauritania, respectively. The samples were taken to the laboratory, where their size and aspect ratio distributions, mean chemical composition, spectral mass absorption efficiency, and spectral imaginary refractive index were obtained from the ultraviolet (UV) to the near-infrared (NIR) wavelengths. At SS1 in Algeria, the time series of the scattering coefficients during the period of the campaign show dust events exceeding 3500 Mm−1, and a relatively high mean SSA of 0.995 at 670 nm was observed at this site. The laboratory results show for the fine particle size distributions (particles diameter  < 5µm and mode diameter at 2–3 µm) in both sites a spectral dependence of the imaginary part of the refractive index Im(m) with a bow-like shape, with increased absorption in UV as well as in the shortwave infrared. The same signature was not observed, however, in the mixed particle size distribution (particle diameter  < 10 µm and mode diameter at 4 µm) in Algeria. Im(m) was found to range from 0.011 to 0.001i for dust collected in Algeria and 0.008 to 0.002i for dust collected in Mauritania over the wavelength range of 350–2500 nm. Differences in the mean elemental composition of the dust collected in the supersites in Algeria and in Mauritania and between fine and mixed particle size distributions were observed from EDXRF measurements, although those differences cannot be used to explain the optical properties variability between the samples. Finally, particles with low-density typically larger than 10 µm in diameter were found in some of the samples collected at the supersite in Mauritania, but these low-density particles were not observed in Algeria

Intervention effects of Ganoderma lucidum spores on epileptiform discharge hippocampal neurons and expression of Neurotrophin-4 and N-Cadherin

Epilepsy can cause cerebral transient dysfunctions. Ganoderma lucidum spores (GLS), a traditional Chinese medicinal herb, has shown some antiepileptic effects in our previous studies. This was the first study of the effects of GLS on cultured primary hippocampal neurons, treated with Mg2+ free medium. This in vitro model of epileptiform discharge hippocampal neurons allowed us to investigate the anti-epileptic effects and mechanism of GLS activity. Primary hippocampal neurons from <1 day old rats were cultured and their morphologies observed under fluorescence microscope. Neurons were confirmed by immunofluorescent staining of neuron specific enolase (NSE). Sterile method for GLS generation was investigated and serial dilutions of GLS were used to test the maximum non-toxic concentration of GLS on hippocampal neurons. The optimized concentration of GLS of 0.122 mg/ml was identified and used for subsequent analysis. Using the in vitro model, hippocampal neurons were divided into 4 groups for subsequent treatment i) control, ii) model (incubated with Mg2+ free medium for 3 hours), iii) GLS group I (incubated with Mg2+ free medium containing GLS for 3 hours and replaced with normal medium and incubated for 6 hours) and iv) GLS group II (neurons incubated with Mg2+ free medium for 3 hours then replaced with a normal medium containing GLS for 6 hours). Neurotrophin-4 and N-Cadherin protein expression were detected using Western blot. The results showed that the number of normal hippocampal neurons increased and the morphologies of hippocampal neurons were well preserved after GLS treatment. Furthermore, the expression of neurotrophin-4 was significantly increased while the expression of N-Cadherin was decreased in the GLS treated group compared with the model group. This data indicates that GLS may protect hippocampal neurons by promoting neurotrophin-4 expression and inhibiting N-Cadherin expression