Strongly correlated fermions with nonlinear energy dispersion and spontaneous generation of anisotropic phases

Using the bosonization approach we study fermionic systems with a nonlinear dispersion relation in dimension d>2. We explicitly show how the band curvature gives rise to interaction terms in the bosonic version of the model. Although these terms are perturbatively irrelevant in relation to the Landau Fermi liquid fixed point, they become relevant perturbations when instabilities take place. Using a coherent state path integral technique we built up the effective action that governs the dynamics of the Fermi surface fluctuations. We consider the combined effect of fermionic interactions and band curvature on possible anisotropic phases triggered by negative Landau parameters. In particular we study in some detail the phase diagram for the isotropic/nematic/hexatic quantum phase transition.Comment: RevTeX4, 9 pages, 2 eps figures, Final version as appeared in Phys.Rev.

Erratum to: Localization of Fatty Acyl and Double Bond Positions in Phosphatidylcholines Using a Dual Stage CID Fragmentation Coupled with Ion Mobility Mass Spectrometry.

A high content molecular fragmentation for the analysis of phosphatidylcholines (PC) was achieved utilizing a two-stage [trap (first generation fragmentation) and transfer (second generation fragmentation)] collision-induced dissociation (CID) in combination with travelling-wave ion mobility spectrometry (TWIMS). The novel aspects of this work reside in the fact that a TWIMS arrangement was used to obtain a high level structural information including location of fatty acyl substituents and double bonds for PCs in plasma, and the presence of alkali metal adduct ions such as [M + Li](+) was not required to obtain double bond positions. Elemental compositions for fragment ions were confirmed by accurate mass measurements. A very specific first generation fragment ion m/z 577 (M-phosphoryl choline) from the PC [16:0/18:1 (9Z)] was produced, which by further CID generated acylium ions containing either the fatty acyl 16:0 (C(15)H(31)CO(+), m/z 239) or 18:1 (9Z) (C(17)H(33)CO(+), m/z 265) substituent. Subsequent water loss from these acylium ions was key in producing hydrocarbon fragment ions mainly from the α-proximal position of the carbonyl group such as the hydrocarbon ion m/z 67 (+H(2)C-HC = CH-CH = CH(2)). Formation of these ions was of important significance for determining double bonds in the fatty acyl chains. In addition to this, and with the aid of (13)C labeled lyso-phosphatidylcholine (LPC) 18:1 (9Z) in the ω-position (methyl) TAP fragmentation produced the ion at m/z 57. And was proven to be derived from the α-proximal (carboxylate) or distant ω-position (methyl) in the LPC. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s13361-011-0172-2) contains supplementary material, which is available to authorized users

Cations extraction of sandy-clay soils from Cavado valley, Portugal, using sodium salts solutions

Cases of contamination by metals in the water wells of the Cavado Valley in north-west Portugal can be attributed to the heavy leaching of clay soils due to an excess of nitrogen resulting from the intensive use of fertilisers in agricultural areas. This work focuses on the natural weathering characteristics of soils, particularly the clay material, through the study of samples collected near the River Cavado. Samples taken from various sites, after physico-chemical characterisation, were subjected to clay dissolution tests, using sodium salts of different ionic forces, to detect the relationship between certain physico-chemical parameters of water, such as pH, nitrate, chloride and sulphate content, in the dissolution of clay and the subsequent extraction of such cations as Al, Fe and K. In acidic sandy clay soils, the mineralogical composition of which was characterised by a predominance of quartz, micas, kaolinite and K-feldspars, decreases of the clay material/water pH ratio increases dissolution of the micaceous and K-feldspars phases. The presence of nitrates in the aqueous solution apparently advanced the extraction of all three cations Al, Fe and K. The specific surface area of the clay material showed a significant correlation with the main kinetic parameters of cation extraction.Têm ocorrido casos de contaminações de águas de poços, por metais, no vale do Rio Cávado, região noroeste de Portugal. A princípio, poderiam ser explicáveis pela elevada lixiviação dos solos arenoargilosos da região, quando da prática de adubações intensivas de nitrogênio em áreas agrícolas. Assim, estudaram-se as características do intemperismo natural dos solos, particularmente da fração argila, característica da margem norte do rio Cávado. Coletaram-se amostras de vários locais, que foram submetidas, após caracterização físico-química, a ensaios de dissolução a partir de soluções de sais de sódio com diferentes forças iônicas. O objetivo foi observar as relações de determinados parâmetros físico-químicos da água, tais como: pH, nitratos, cloretos e sulfatos na dissolução das argilas e a conseqüente extração de espécies químicas tais como Al, K e Fe. Para solos areno-argilosos, ácidos, cuja composição mineralógica se caracteriza por um predomínio de quartzo, micas, caulinita e feldspato-K, o abaixamento do pH da suspensão solo/água promove a solubilização das fases micáceas e feldspáticas. A presença do nitrato nas soluções aquosas promoveu aparentemente a extração de todos os três cátions: Al, K e Fe. O efeito da área superfícial específica das partículas dos solos condicionou fortemente vários dos parâmetros cinéticos estudados relativos à extração dos cátions.(undefined

A mean-field kinetic lattice gas model of electrochemical cells

We develop Electrochemical Mean-Field Kinetic Equations (EMFKE) to simulate electrochemical cells. We start from a microscopic lattice-gas model with charged particles, and build mean-field kinetic equations following the lines of earlier work for neutral particles. We include the Poisson equation to account for the influence of the electric field on ion migration, and oxido-reduction processes on the electrode surfaces to allow for growth and dissolution. We confirm the viability of our approach by simulating (i) the electrochemical equilibrium at flat electrodes, which displays the correct charged double-layer, (ii) the growth kinetics of one-dimensional electrochemical cells during growth and dissolution, and (iii) electrochemical dendrites in two dimensions.Comment: 14 pages twocolumn, 17 figure

Os sistemas agroflorestais como alternativa de sustentabilidade em ecossistemas de várzea no Amazonas.

Os sistemas agroflorestais (SAFs) representam uma alternativa agroecológica de produção, sob regime sustentável, para os agricultores familiares na várzea dos Rios Solimões/Amazonas, principalmente no que se refere ao manejo florestal, à diversidade de produtos e à geração de renda. Diante disso, o objetivo deste trabalho foi compreender as diferentes formas de apropriação e de manejo dos recursos naturais através dos SAFs, nos subsistemas roça, sítio e lagos, como componente para a sustentabilidade dos agricultores familiares da localidade Costa da Terra Nova, município do Careiro da Várzea, Amazonas. O método empregado foi o Estudo de Caso com aplicação de questionários, entrevistas e observação participante. A produção familiar na Costa da Terra Nova é representada pelos SAFs, constituído pelos os subsistemas: roça quintal e lago, que proporcionam produtos tanto para subsistência quanto para comercialização local, e estabelecendo a agricultura como fundamental atividade na localidade. O principal produto para comercialização é obtido das hortaliças cultivadas na época da vazante no subsistema roça nas comunidades São Francisco e Nossa Senhora da Conceição; e do extrativismo pesqueiro no subsistema lago, na época da cheia, principalmente na comunidade São José. A criação de animal se dá no subsistema sítio e é apenas para subsistência, sendo as aves e os suínos os principais animais domésticos criados nas três comunidades. Portanto os SAFs tradicionais, constituídos pelos subsistemas, roça, sitio e lago, são responsáveis pela sustentabilidade socioeconômica da localidade pesquisada, servindo, como alternativa agrícola melhor adaptada às condições locais das áreas de várzea na Amazônia

Variation in pre-PCR processing of FFPE samples leads to discrepancies in BRAF and EGFR mutation detection: a diagnostic RING trial.

Aims Mutation detection accuracy has been described extensively; however, it is surprising that pre-PCR processing of formalin-fixed paraffin-embedded (FFPE) samples has not been systematically assessed in clinical context. We designed a RING trial to (i) investigate pre-PCR variability, (ii) correlate pre-PCR variation with EGFR/BRAF mutation testing accuracy and (iii) investigate causes for observed variation. Methods 13 molecular pathology laboratories were recruited. 104 blinded FFPE curls including engineered FFPE curls, cell-negative FFPE curls and control FFPE tissue samples were distributed to participants for pre-PCR processing and mutation detection. Follow-up analysis was performed to assess sample purity, DNA integrity and DNA quantitation. Results Rate of mutation detection failure was 11.9%. Of these failures, 80% were attributed to pre-PCR error. Significant differences in DNA yields across all samples were seen using analysis of variance (p<0.0001), and yield variation from engineered samples was not significant (p=0.3782). Two laboratories failed DNA extraction from samples that may be attributed to operator error. DNA extraction protocols themselves were not found to contribute significant variation. 10/13 labs reported yields averaging 235.8ng (95% CI 90.7 to 380.9) from cell-negative samples, which was attributed to issues with spectrophotometry. DNA measurements using Qubit Fluorometry demonstrated a median fivefold overestimation of DNA quantity by Nanodrop Spectrophotometry. DNA integrity and PCR inhibition were factors not found to contribute significant variation. Conclusions In this study, we provide evidence demonstrating that variation in pre-PCR steps is prevalent and may detrimentally affect the patient's ability to receive critical therapy. We provide recommendations for preanalytical workflow optimisation that may reduce errors in down-stream sequencing and for next-generation sequencing library generation

Gemini Observations of Galaxies in Rich Early Environments (GOGREEN) I: survey description

We describe a new Large Program in progress on the Gemini North and South telescopes: Gemini Observations of Galaxies in Rich Early Environments (GOGREEN). This is an imaging and deep spectroscopic survey of 21 galaxy systems at 1 10 in halo mass. The scientific objectives include measuring the role of environment in the evolution of low-mass galaxies, and measuring the dynamics and stellar contents of their host haloes. The targets are selected from the SpARCS, SPT, COSMOS, and SXDS surveys, to be the evolutionary counterparts of today's clusters and groups. The new red-sensitive Hamamatsu detectors on GMOS, coupled with the nod-and-shuffle sky subtraction, allow simultaneous wavelength coverage over λ ∼ 0.6–1.05 μm, and this enables a homogeneous and statistically complete redshift survey of galaxies of all types. The spectroscopic sample targets galaxies with AB magnitudes z΄ < 24.25 and [3.6] μm < 22.5, and is therefore statistically complete for stellar masses M* ≳ 1010.3 M⊙, for all galaxy types and over the entire redshift range. Deep, multiwavelength imaging has been acquired over larger fields for most systems, spanning u through K, in addition to deep IRAC imaging at 3.6 μm. The spectroscopy is ∼50 per cent complete as of semester 17A, and we anticipate a final sample of ∼500 new cluster members. Combined with existing spectroscopy on the brighter galaxies from GCLASS, SPT, and other sources, GOGREEN will be a large legacy cluster and field galaxy sample at this redshift that spectroscopically covers a wide range in stellar mass, halo mass, and clustercentric radius

Counting the bodies: Estimating the numbers and spatial variation of Australian reptiles, birds and mammals killed by two invasive mesopredators

Aim Introduced predators negatively impact biodiversity globally, with insular fauna often most severely affected. Here, we assess spatial variation in the number of terrestrial vertebrates (excluding amphibians) killed by two mammalian mesopredators introduced to Australia, the red fox (Vulpes vulpes) and feral cat (Felis catus). We aim to identify prey groups that suffer especially high rates of predation, and regions where losses to foxes and/or cats are most substantial. Location Australia. Methods We draw information on the spatial variation in tallies of reptiles, birds and mammals killed by cats in Australia from published studies. We derive tallies for fox predation by (i) modelling continental-scale spatial variation in fox density, (ii) modelling spatial variation in the frequency of occurrence of prey groups in fox diet, (iii) analysing the number of prey individuals within dietary samples and (iv) discounting animals taken as carrion. We derive point estimates of the numbers of individuals killed annually by foxes and by cats and map spatial variation in these tallies. Results Foxes kill more reptiles, birds and mammals (peaking at 1071 km−2 year−1) than cats (55 km−2 year−1) across most of the unmodified temperate and forested areas of mainland Australia, reflecting the generally higher density of foxes than cats in these environments. However, across most of the continent – mainly the arid central and tropical northern regions (and on most Australian islands) – cats kill more animals than foxes. We estimate that foxes and cats together kill 697 million reptiles annually in Australia, 510 million birds and 1435 million mammals. Main conclusions This continental-scale analysis demonstrates that predation by two introduced species takes a substantial and ongoing toll on Australian reptiles, birds and mammals. Continuing population declines and potential extinctions of some of these species threatens to further compound Australia's poor contemporary conservation record