Langmuir cells and mixing in the upper ocean

The presence of surface gravity waves at the ocean surface has two important effects on turbulence in the oceanic mixed layer (ML): the wave breaking and the Langmuir cells (LC). Both these effects act as additional sources of turbulent kinetic energy (TKE) in the oceanic ML, and hence are important to mixing in the upper ocean. The breaking of high wave-number components of the wind wave spectrum provides an intense but sporadic source of turbulence in the upper surface; turbulence thus injected diffuses downward, while decaying rapidly, modifying oceanic near-surface properties which in turn could affect the air-sea transfer of heat and dissolved gases. LC provide another source of additional turbulence in the water column; they are counter-rotating cells inside the ML, with their axes roughly aligned in the direction of the wind (Langmuir I., Science, 87 (1938) 119). These structures are usually made evident by the presence of debris and foam in the convergence area of the cells, and are generated by the interaction of the wave-field–induced Stokes drift with the wind-induced shear stress. LC have long been thought to have a substantial influence on mixing in the upper ocean, but the difficulty in their parameterization have made ML modelers consistently ignore them in the past. However, recent Large Eddy Simulations (LES) studies suggest that it is possible to include their effect on mixing by simply adding additional production terms in the turbulence equations, thus enabling even 1D models to incorporate LC-driven turbulence. Since LC also modify the Coriolis terms in the mean momentum equations by the addition of a term involving the Stokes drift, their effect on the velocity structure in the ML is also quite significant and could have a major impact on the drift of objects and spilled oil in the upper ocean. In this paper we examine the effect of surface gravity waves on mixing in the upper ocean, focusing on Langmuir circulations, which is by far the dominant part of the surface wave contribution to mixing. Oceanic ML models incorporating these effects are applied to an observation station in the Northern Adriatic Sea to see what the extent of these effects might be. It is shown that the surface wave effects can indeed be significant; in particular, the modification of the velocity profile due to LC-generated turbulence can be large under certain conditions. However, the surface wave effects on the bulk properties of the ML, such as the associated temperature, while significant, are generally speaking well within the errors introduced by uncertainties in the external forcing of the models. This seems to be the reason why ML models, though pretty much ignoring surface wave effects until recently, have been reasonably successful in depicting the evolution of the mixed layer temperature (MLT) at various timescales

Wave extreme characterization using self-organizing maps

The self-organizing map (SOM) technique is considered and extended to assess the extremes of a multivariate sea wave climate at a site. The main purpose is to obtain a more complete representation of the sea states, including the most severe states that otherwise would be missed by a SOM. Indeed, it is commonly recognized, and herein confirmed, that a SOM is a good regressor of a sample if the frequency of events is high (e.g., for low/moderate sea states), while a SOM fails if the frequency is low (e.g., for the most severe sea states). Therefore, we have considered a trivariate wave climate (composed by significant wave height, mean wave period and mean wave direction) collected continuously at the Acqua Alta oceanographic tower (northern Adriatic Sea, Italy) during the period 1979–2008. Three different strategies derived by SOM have been tested in order to capture the most extreme events. The first contemplates a pre-processing of the input data set aimed at reducing redundancies; the second, based on the post-processing of SOM outputs, consists in a two-step SOM where the first step is applied to the original data set, and the second step is applied on the events exceeding a given threshold. A complete graphical representation of the outcomes of a two-step SOM is proposed. Results suggest that the post-processing strategy is more effective than the pre-processing one in order to represent the wave climate extremes. An application of the proposed two-step approach is also provided, showing that a proper representation of the extreme wave climate leads to enhanced quantification of, for instance, the alongshore component of the wave energy flux in shallow water. Finally, the third strategy focuses on the peaks of the storms

Are there any risks of the disposal of pesticide effluents in soils? Biobed system meets ecotoxicology ensuring safety to soil fauna.

The biobed is a purification system, which reduces soil pollution for receiving pesticide residues from handling and washing machinery in agricultural areas. The aims of this study were (1) to assess ecotoxicity effects over time to soil fauna, posed by Lorsban® 480 BR (Chlorpyrifos) and Dithane® NT (Mancozeb) residues when disposed of in a biobed system compared with two subtropical soils, and (2) to assess ecotoxicity effects over time to soil fauna simulating an accidental spillage with Lorsban® 480 BR at the biobed. A semi-field experiment was conducted for 420 days in southern Brazil, testing continuous disposal of washing pulverization tanks in biobeds, Typic Haploperox or Typic Hapludults. In addition, different biobeds received a single dose (1 L) of Lorsban® 480 BR to simulate an accidental spillage. Chronic ecotoxicity tests were performed using Folsomia candida, Eisenia andrei, and Enchytraeus crypticus in different sampling times for both experiments.F. candida was the most sensitive species. The biobed system was able to eliminate effects from residues of both pesticides over time in all species, which did not happen in both natural soils. In accidental spillage simulation, even 420 days after contamination, F. candida did not show reproduction. The biobeds can be a feasible alternative for the disposal and treatment residues of pesticides, also for handling and washing pesticides activities. The system was efficient in promoting degradation and reducing ecotoxicity effects posed by Lorsban® 480 BR and Dithane® NT for soil fauna. It is a safe alternative to avoid soil contamination

Infrapatellar fat pad gene expression and protein production in patients with and without osteoarthritis

Osteoarthritis (OA) is one of the most common joint disorders. Evidence suggests that the infrapatellar fat pad (IFP) is directly involved in OA pathology. However, a comparison between OA versus non-OA IFP is still missing. Thus, the aim of this study was to compare IFP molecular, adipocytes and extracellular matrix characteristics of patients affected by OA, and patients undergoing anterior cruciate ligament (ACL) reconstruction. We hypothesized that not only inflammation but also changes in adipocytes and extracellular matrix (ECM) composition might be involved in OA pathogenesis. Fifty-three patients were enrolled. IFP biopsies were obtained, evaluating: (a) lymphocytic infiltration and vascularization; (b) adipocytes area and number; (c) adipo-cytokines and extracellular matrix gene expression levels; (d) IL-6 and VEGF protein production; (e) collagen fibers distribution. OA IFP was more inflamed and vascularized compared to ACL IFP. OA IFP adipocytes were larger and numerically lower (1.3-fold) than ACL IFP adipocytes. An increase of gene expression of typical white adipose tissue genes was observed in OA compared to ACL IFP. Collagen-types distribution was different in the OA IFP group compared to controls, possibly explaining the change of the biomechanical characteristics found in OA IFP. Statistical linear models revealed that the adipocyte area correlated with BMI in the OA group. In conclusion, inflammation and fibrotic changes of OA IFP could represent novel therapeutic targets to counteract OA

Prevalence of Desmin Mutations in Dilated Cardiomyopathy

Background— Desmin-related myofibrillar myopathy (DRM) is a cardiac and skeletal muscle disease caused by mutations in the desmin ( DES ) gene. Mutations in the central 2B domain of DES cause skeletal muscle disease that typically precedes cardiac involvement. However, the prevalence of DES mutations in dilated cardiomyopathy (DCM) without skeletal muscle disease is not known. Methods and Results— Denaturing high-performance liquid chromatography was used to screen DES for mutations in 116 DCM families from the Familial Dilated Cardiomyopathy Registry and in 309 subjects with DCM from the Beta-Blocker Evaluation of Survival Trial (BEST). DES mutations were transfected into SW13 and human smooth muscle cells and neonatal rat cardiac myocytes, and the effects on cytoskeletal desmin network architecture were analyzed with confocal microscopy. Five novel missense DES mutations, including the first localized to the highly conserved 1A domain, were detected in 6 subjects (1.4%). Transfection of DES mutations in the 2B domain severely disrupted the fine intracytoplasmic staining of desmin, causing clumping of the desmin protein. A tail domain mutation (Val459Ile) showed milder effects on desmin cytoplasmic network formation and appears to be a low-penetrant mutation restricted to black subjects. Conclusions— The prevalence of DES mutations in DCM is between 1% and 2%, and mutations in the 1A helical domain, as well as the 2B rod domain, are capable of causing a DCM phenotype. The lack of severe disruption of cytoskeletal desmin network formation seen with mutations in the 1A and tail domains suggests that dysfunction of seemingly intact desmin networks is sufficient to cause DCM

Submarine canyon dynamics - Executive Summary

Discussing submarine canyons dynamics through a multidisciplinary approach allowed to identify both advances in knowledge and remaining gaps concerning the controlling factors underlying the formation, development, ecological functioning and vulnerability of canyons at various time scales. As a result, we identified a number of recommendations for future research and actions that the interested reader will discover in this synthetic chapter, drafted as a collective effort in the months following our meeting. The subsequent chapters, each written by a workshop participant, detail the specificities and dynamics of of submarine canyons within and beyond the Mediterranean domain

New Insight on the Increasing Seismicity during Tenerife's 2004 Volcanic Reactivation

Starting in April 2004, unusual seismic activity was observed in the interior of the island of Tenerife (Canary Islands, Spain) with much evidence pointing to a reawakening of volcanic activity. This seismicity is now analyzed with techniques unprecedented in previous studies of this crisis. The 200 earthquakes located onshore during 2004 and 2005 have been classified by cross-correlation, resulting in a small number of significant families. The application of a relative location algorithm (hypoDD) revealed important features about the spatial distribution of the earthquakes. The seismic catalogue has been enhanced with more than 800 additional events, detected only by the closest seismic station. These events were assigned to families by correlation and as a consequence their hypocentral location and magnitude were estimated by comparing them to the earthquakes of each family. The new catalogue obtained by these methods identifies two major seismogenic zones, one to the northwest and the other to the southwest of the Teide-Pico Viejo complex and having a separation of at least 10 km between them. These regions alternate their activity starting in January 2004, i.e., three months earlier than previously thought. We propose a simple model based on the results of this work which will also concur with all previous geophysical and geochemical studies of the 2004 crisis. The model proposes a single magma intrusion affecting the central part of the island with lateral dikes driven by the rifts to the northwest and southwest.Comment: 20 pages, 15 figure