Fungal-mediated mortality explains the different effects of dung leachates on the germination response of grazing increaser and decreaser species

Depending on their response to grazing, grassland species can be categorized as grazing increasers or decreasers. Grazing by livestock includes several different activities that can impact species differently. Recent evidence suggest that one of these actions, dung deposition, can reduce the germinative performance of decreaser species, thus favouring increasers. The present study tested the hypothesis that decreased germinative success of decreaser species is caused by a greater activity of fungal pathogens under the influence of dung leachates. We performed a phytotron experiment analysing the germination and fungal infections of fourteen species from Mediterranean grasslands. Species were grouped into phylogenetically-related pairs, composed of an increaser and a decreaser species. Seeds of each species were germinated under four different treatments (control, dung leachate addition, fungicide addition and dung leachate and fungicide addition), and the differences in germination percentage, germination speed and infection rate between each increaser species and its decreaser counterpart were analysed. Decreaser species were more affected by mortality than increaser ones, and these differences were higher under the presence of dung leachates. The differences in germinative performance after excluding the effect of seed mortality did not differ between treatments, showing that the main mechanism by which dung leachates favour increaser species is through increased mortality of the seeds of decreaser species. Drastic reductions in the number of dead seeds in the treatments including fungicide addition further revealed that fungal pathogens are responsible for these differences between species with different grazing response. The different vulnerabilities of increaser and decreaser species to the increased activity of fungal pathogens under the presence of dung leachates seems the main reason behind the differential effect of these leachates on species with different grazing responseFinancial support was received from the Spanish MINECO (Project CGL2014- 53789-R) and the Madrid Regional Government (Project REMEDINAL3). CPC was supported by a Marie Curie Intra-European Fellowship within the 7th European Community Framework Programme (TANDEM; project id. 626392

Concepts and applications in functional diversity

The use of functional diversity analyses in ecology has grown exponentially over the past two decades, broadening our understanding of biological diversity and its change across space and time. Virtually all ecological sub-disciplines recognise the critical value of looking at species and communities from a functional perspective, and this has led to a proliferation of methods for estimating contrasting dimensions of functional diversity. Differences between these methods and their development generated terminological inconsistencies and confusion about the selection of the most appropriate approach for addressing any particular ecological question, hampering the potential for comparative studies, simulation exercises and meta-analyses. Two general mathematical frameworks for estimating functional diversity are prevailing: those based on dissimilarity matrices (e.g. Rao entropy, functional dendrograms) and those relying on multidimensional spaces, constructed as either convex hulls or probabilistic hypervolumes. We review these frameworks, discuss their strengths and weaknesses and provide an overview of the main R packages performing these calculations. In parallel, we propose a way for organising functional diversity metrics in a unified scheme to quantify the richness, divergence and regularity of species or individuals under each framework. This overview offers a roadmap for confidently approaching functional diversity analyses both theoretically and practically.Peer reviewe

More for less: Sampling strategies of plant functional traits across local environmental gradients

This is the peer reviewed version of the following article: Functional Ecology 29.4 (2015): 579-588, which has been published in final form at http://dx.doi.org/10.1111/1365-2435.12366. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-ArchivingEcologists use approaches based on plant functional traits to tackle several fundamental and applied questions. Although a perfect characterization of functional trait structure requires the measurement of all the individuals in communities, this is prohibitively resource-consuming. Consequently, the general practice is to average the trait values of a reduced number of individuals per species. However, there are different alternatives regarding the number, identity and spatial location of the individuals chosen to calculate species-averaged trait values. In this study, we compared different strategies for sampling functional traits, using community-weighted mean trait values (CWM) and the Rao index of functional diversity (FD). We intensively sampled the functional trait structure along a topographical gradient in a Mediterranean grassland, obtaining accurate estimations of the 'real' values of these indices (CWMI and FDI) for three traits (height, leaf area and specific leaf area). We simulated three different sampling strategies differing in the spatial location of the individuals used to estimate species-mean trait: (i) average of the whole gradient (GLO), (ii) average of the sampling unit in which the abundances of species maximize (MAX) and (iii) average of a reduced number of individuals per species and sampling unit (LOC). For each strategy, we simulated different sampling intensities (number of individuals sampled). For each trait, we examined the ability of each strategy and sampling intensity to accurately estimate CWMI and FDI, as well as their ability to detect changes in functional trait structure along the topographical gradient. LOC outperformed the other strategies in terms of accuracy and bias, and was much more efficient to describe changes along the gradient, regardless of the traits and indicators considered. Furthermore, LOC was the only strategy that improved consistently as sampling intensity increased, especially at low levels of intensity. Our results indicate that the impact of considering intraspecific variability in trait values can be greater than commonly assumed. Strategies that neglect this source of variability can result in inaccurate or biased estimations of the functional trait structure of plant communities. Most importantly, we show that intraspecific variability can be taken into consideration without any increases in the total number of individuals measuredFinancial support was received from the Spanish Ministry of Science (Project CGL2011-24871), the Madrid Regional Government (Project REMEDINAL3), and the Spanish Ministry of Education (FPU AP2012-2849 for CR). CPC was supported by a Marie Curie Intra-European Fellowship within the 7th European Community Framework Programme (TANDEM; project id. 626392

Diverging facets of grassland ant diversity along a Mediterranean elevational gradient

1. We address associations of taxonomic diversity (TD), functional diversity (FD), and phylogenetic diversity (PD) of ant assemblages with gradients of elevation to assess whether energetic limitations or deterministic or stochastic niche-building processes are more relevant to the assembly of communities. 2. We sampled ant assemblages using pitfall traps in grassland habitats along an elevational gradient of 1712 m in the Guadarrama Mountains of Central Spain. The relationships of alpha and beta diversity metrics with soil temperature, productivity, elevation, and geographical distances were examined with generalised additive (mixed) models. 3. The facets of diversity showed strong and partially coincident responses to the gradients, but the responses and the similarities among them weakened or disappeared when the effects of species richness were factored out. TD and FD changed roughly in a similar manner with elevation and productivity, but PD did not show clear responses to those factors. Taxonomic and functional richness increased with productivity and decreased with elevation. Mean pairwise functional and phylogenetic dissimilarities did not change along the gradients. Elevation and productivity gradients accounted for much of the beta TD among assemblages but only explained a moderate variation of functional traits and phylogenetic relationships, while geographical distances were more explanatory of beta PD. 4. The partial redundancies among facets of diversity suggest that the spatial variation of diversity is mainly related to the sheer number of species. However, both environmental filtering and limiting similarity could be acting in concordance to reduce the number of species present in communitiesAdministrative and financial support was received from the Spanish Ministry of Economy and Competitiveness (Project CGL2014‐53789‐R) and Sierra de Guadarrama Park, which provided the permits for the sampling (ref 10/101642.9/16). Mariola Silvestre, Javier Seoane, and Francisco M. Azcárate work within the Madrid's Government research group network REMEDINAL3‐CM (S‐2013/MAE‐2719). Carlos P. Carmona was supported by the Estonian Research Council (PSG293) and the European Union through the European Regional Development Fund (Centre of Excellence EcolChange). Mariola Silvestre was supported by an FPI grant from MINECO. Special thanks to Héctor Miranda, Laura Morgado, and Miguel Blázquez for laboratory assistance and Violeta Hevia, Joaquin Calatayud, and Anders Forsman for your tips. Alberto González helped us to make the map and Xavier Espadaler to identify some species. We appreciate the use of data from Instituto Geográfico Nacional and Nuria Plaza for provided access with the satellite imager

Author Correction: Contrasting functional structure of saproxylic beetle assemblages associated to different microhabitats

Correction to: Scientific Reports https://doi.org/10.1038/s41598-020-58408-6, published online 30 January 202

Role of floral strips and semi-natural habitats as enhancers of wild bee functional diversity in intensive agricultural landscapes

Los autores de la UAM pertenecen al Terrestrial Ecology Group, Department of EcologyInstalling patches of flowering plants is a commonly used strategy to enhance refuge and food resources for pollinators in intensive agricultural landscapes. Here, we evaluated how floral strips and semi-natural habitats impact the taxonomic and functional diversity of wild bees in intensively farmed sunflower fields. Pan traps were used to assess bee richness and functional diversity at 22 sampling sites (11 sites were positioned in sunflower fields with floral strips, and 11 control sites were adjacent to semi-natural habitats). Five sampling levels were established in each field, positioned at different distances from the flower strip or semi-natural habitat. Wild bee species richness and functional richness were significantly higher inside floral strips and semi-natural habitats compared to sunflower fields. Functional redundancy was significantly higher inside agricultural fields compared to inside floral strips and semi-natural habitats. Sunflower fields with floral strips had lower Rao values compared to sunflower fields adjacent to semi-natural habitats. The community-weighted mean (CWM) of intertegular distance (distance between where wings attach to body) of wild bees was significantly higher in sunflower fields adjacent to semi-natural habitats. In comparison, the CWM of wing length varied across sampling levels in sunflower fields with semi-natural habitats. Our results show it is essential to have semi-natural habitats within intensive agricultural landscapes to ensure the conservation of wild bee diversity, while the installation of floral strips offers a partial substitute to enhance wild bee diversity when semi-natural habitats are scarce or absentFinancial support was provided by the European Union FEDER INTERREG SUDOE Program (SOE1/P5/E0129). CPC was supported by the Estonian Ministry of Education and Research (PSG293) and the European Regional Development Fund (Centre of Excellence EcolChange

Intraspecific variation in fine-root traits is larger than in aboveground traits in European herbaceous species regardless of drought

Differences within species (Intraspecific trait variation - ITV) contribute substantially to overall trait variability and environmental harshness can reduce among-species variation. While aboveground traits have received considerable attention, knowledge about ITV in fine-root traits and how it differs from ITV in aboveground traits remains limited. This study examined the partitioning of trait variation aboveground and fine-root traits in 52 European herbaceous species and how such proportions change in response to drought, offering valuable insights for accurate functional species characterization and inter-species comparisons. We studied seven morphological aboveground and fine-root traits under drought and well-watered conditions in a greenhouse experiment. Linear mixed effect models and permutational multivariate analysis of variance (PERMANOVA) were employed to decompose trait variation, ensuring the robustness of our results. We also calculated variance partitioning for the combination of aboveground traits and the combination of fine-root traits, as well as pairs of analogous leaf and fine-root traits (i.e., traits that fulfill similar functions) for each treatment (control and drought). Among-species trait differences explained a greater proportion of overall variance than within-species variation, except for root dry matter content (RDMC). Height and leaf area stood out, with species’ identity accounting for 87-90% of total trait variation. Drought had no significant effect on the proportions of variation in any of the traits. However, the combination of fine-root traits exhibited higher intraspecific variability (44-44%) than aboveground traits (19-21%) under both drought and control. Analogous root traits also showed higher ITV (51-50%) than analogous leaf traits (27-31%). Our findings highlight substantial within-species variation and the nuanced responses of fine-root traits, particularly RDMC, suggesting root traits’ flexibility to soil heterogeneity that fosters less differentiation among species. Among-species trait differences, especially aboveground, may underscore distinct strategies and competitive abilities for resource acquisition and utilization. This study contributes to elucidate the mechanisms underlying the multifunctionality of the above- and belowground plants compartments

Assessing vulnerability of functional diversity to species loss: a case study in Mediterranean agricultural systems

"This is the peer reviewed version of the following article: Functional Ecology 31.2 (2017): 427-435, which has been published in final form at https://doi.org/10.1111/1365-2435.12709. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions"Increasing land-use intensification is leading to biodiversity losses world-wide, which can reduce the functioning of ecosystems. However, it is increasingly clear that not all species are equally important for ecosystem processes: whereas the loss of a functionally unique species may reduce the capacity of the community to perform some functions, losing a functionally redundant species should have a much smaller impact. Assessing the vulnerability of functional diversity (FD) to species extinctions can help to predict the impacts of land-use intensification. This approach consists in ranking species according to their risk of extinction and then estimating the trajectory followed by FD as species are lost from local communities. However, the most widely used FD indices are not independent of species richness, being much more sensitive to the loss of species in species-poor than in species-rich sites. This may result in misleading interpretations, affecting our ability to rank communities according to the vulnerability of their FD to species loss, by confounding it with the initial level of species richness. Here, we propose comparing the trajectory of FD under the most plausible order of species loss with that followed under random species losses as an effective way to remove the trivial effect of species richness in the assessments of vulnerability to species loss. After decoupling vulnerability from species richness, we used it to analyse the effect of agricultural intensification on the vulnerability of arable plant communities in Mediterranean agricultural fields. Our results show that management strategies aiming to increase the functionality of these systems should focus on intermediately intensified fields, where small reductions in the level of intensification are likely to benefit arable plant diversity, increasing the number of species and FD and decreasing the vulnerability of FD to species losses. Removing the effect of species richness is essential to attain unbiased estimations of the vulnerability of communities to species loss, especially when species-poor communities are considered. Combining vulnerability with information on taxonomic and functional diversity appears as a promising tool to inform decision-making processes, anticipating the effects of local extinction

BRAF and TERT mutations in papillary thyroid cancer patients of Latino ancestry.

Papillary thyroid cancer (PTC) is the second most commonly diagnosed malignancy in U.S. Latinas and in Colombian women. Studies in non-Latinos indicate that BRAF and TERT mutations are PTC prognostic markers. This study aimed to determine the prevalence and clinical associations of BRAF and TERT mutations in PTC Latino patients from Colombia. We analyzed mutations of BRAF (V600E) and TERT promoter (C228T, C250T) in tumor DNA from 141 patients (75 with classical variant PTC, CVPTC; 66 with follicular variant PTC, FVPTC) recruited through a multi-center study. Associations between mutations and clinical variables were evaluated with Fisher exact tests. Survival was evaluated with Kaplan-Meier plots. Double-mutant tumors (BRAF+/TERT+, n = 14 patients) were more common in CVPTC (P = 0.02). Relative to patients without mutations (n = 48), double mutations were more common in patients with large tumors (P = 0.03), lymph node metastasis (P = 0.01), extra-thyroid extension (P = 0.03), and advanced stage (P = 6.0 × 10-5). In older patients, TERT mutations were more frequent (mean age 51 years vs 45 years for wild type TERT, P = 0.04) and survival was lower (HR = 1.20; P = 0.017); however, given the small sample size, the decrease in survival was not statically significant between genotypes. Comparisons with published data in US whites revealed that Colombian patients had a higher prevalence of severe pathological features and of double-mutant tumors (10 vs 6%, P = 0.001). Mutations in both oncogenes show prognostic associations in Latinos from Colombia. Our study is important to advance Latino PTC precision medicine and replicates previous prognostic associations between BRAF and TERT in this population

The HABP2 G534E polymorphism does not increase nonmedullary thyroid cancer risk in Hispanics.

Familial nonmedullary thyroid cancer (NMTC) has not been clearly linked to causal germline variants, despite the large role that genetic factors play in risk. Recently, HABP2 G534E (rs7080536A) has been implicated as a causal variant in NMTC. We have previously shown that the HABP2 G534E variant is not associated with TC risk in patients from the British Isles. Hispanics are the largest and the youngest minority in the United States and NMTC is now the second most common malignancy in women from this population. In order to determine if the HABP2 G534E variant played a role in NMTC risk among Hispanic populations, we analyzed 281 cases and 1105 population-matched controls from a multicenter study in Colombia, evaluating the association through logistic regression. We found that the HABP2 G534E variant was not significantly associated with NMTC risk (P=0.843) in this Hispanic group. We also stratified available clinical data by multiple available clinicopathological variables and further analyzed the effect of HABP2 on NMTC presentation. However, we failed to detect associations between HABP2 G534E and NMTC risk, regardless of disease presentation (P≥0.273 for all cases). Therefore, without any significant associations between the HABP2 G534E variant and NMTC risk, we conclude that the variant is not causal of NMTC in this Hispanic population