Diversity and structure of fragmented populations of a threatened endemic cyprinodontid (Aphanius sophiae) inferred from genetics and otolith morphology: Implications for conservation and management

The assessment of population structure and genetic diversity is crucial for the management and conservation of threatened species. Natural and artificial barriers to dispersal (i.e., gene flow) increase populations’ differentiation and isolation by reducing genetic exchange and diversity. Freshwater ecosystems are highly fragmented because of human activities. Threatened species with small population sizes are more sensitive to habitat fragmentation effects. Here, we investigate the genetic population structure and gene flow among seven populations of Aphanius sophiae in the Kor Basin by using sequences of the complete Cyt b gene and otolith morphometry. The Cyt b gene showed low level of genetic variation, only 4.12% of the identified sites were variable, and 2.42% were parsimony informative. Overall, haplotype diversity was low to moderate and nucleotide diversity was low to extremely low. Fish populations exhibited high levels of genetic differentiation, suggesting limited gene flow among them. These differences were obtained not only among geographically distant populations, but also among neighboring localities. Genetic population structure was supported by the AMOVA analysis and by the haplotype network (only one of 21 haplotypes were shared by two localities). Otolith morphometric analysis was in agreement with genetic results, the two most distant and isolated populations were clearly separated, and genetically close populations showed less differences in morphometry. A significant pattern of isolation by distance was also detected among A. sophiae populations, with genetic distance more correlated with hydrological distance than with geographic distance. Results suggested that limited gene flow due to habitat fragmentation is an important factor contributing to genetic structuring and to the loss of genetic variation of A. sophiae populations. Aphanius sophiae population structure seems to be the result of habitat fragmentation and water pollution, but other factors such as introduced species should be considered. Given the high degree of genetic structuring, the definition of conservation groups is of particular importance for A. sophiae, which should be considered endangered according to the IUCN criteria. Conservation plans must recognize the genetic independence of populations and manage separately preventing the loss of locally adapted genotypes.info:eu-repo/semantics/acceptedVersio

Pristine vs. human-altered Ebro Delta habitats display contrasting resilience to RSLR

River deltas are ecologically and economically valuable coastal ecosystems but low elevations make them extremely sensitive to relative sea level rise (RSLR), i.e. the combined effects of sea level rise and subsidence. Most deltas are subjected to extensive human exploitation, which has altered the habitat composition, connectivity and geomorphology of deltaic landscapes. In the Ebro Delta, extensive wetland reclamation for rice cultivation over the last 150 years has resulted in the loss of 65% of the natural habitats. Here, we compare the dynamics of habitat shifts under two departure conditions (a simulated pristine delta vs. the human-altered delta) using the Sea Level Affecting Marshes Model (SLAMM) under the 4.5 and 8.5 RCP (Representative Concentration Pathways) scenarios for evaluating their resilience to RSLR (i.e. resistance to inundation). Results showed lower inundation rates in the human delta (~10 to 22% by the end of the century, depending on RCP conditions), mostly due to ~4.5 times lower initial extension of coastal lagoons compared to the pristine delta. Yet, inundation rates from ~15 to 30% of the total surface represent the worst possible human scenario, assuming no flooding protection measures. Besides, accretion rates within rice fields are disregarded since this option is not available in SLAMM for developed dry land. In the human delta, rice fields were largely shifted to other wetland habitats and experienced the highest reductions, mostly because of their larger surface. In contrast, in the pristine delta most of the habitats showed significant decreases by 2100 (~2 to 32% of the surface). Coastal infrastructures (dykes or flood protection dunes) and reintroduction of riverine sediments through irrigation channels are proposed to minimize impacts of RSLR. In the worst RCP scenarios, promoting preservation of natural habitats by transforming unproductive rice fields into wetlands could be the most sustainable option.info:eu-repo/semantics/acceptedVersio

First record of the common bream (Abramis brama) introduced to the Iberian Peninsula

This is the first record of the common bream, Abramis brama (Linnaeus, 1758), introduced into the Iberian Peninsula. Eight individuals of this cyprinid fish species were captured (of a total of 978 fish) in the Boadella Reservoir (Catalonia, Spain) on August 18, 2004. This reservoir is only 14 km away from France, where the bream is native, and contains several exotic freshwater fish that are still not widespread in Spain. The further introduction of species and the illegal translocation of the bream by anglers to other Iberian river basins should be controlled by the Spanish administration.Se da la primera cita de la brema, Abramis brama (Linnaeus, 1758), introducida en la Península Ibérica. Se capturaron ocho individuos de esta especie de ciprínido (de un total de 978 peces) en el embalse de Boadella (Cataluña, España) el 18 de agosto de 2004. Este embalse está a sólo 14 km de Francia, donde la brema es nativa, y contiene otras especies exóticas de peces, que aún no son frecuentes en la península. La introducción ilegal de otras especies y la translocación de la brema a otras cuencas ibéricas por parte de pescadores deportivos debería ser controlada por la administración española

Hydropeaking effects on movement patterns of brown trout (Salmo trutta L.)

Radiotelemetry was used to investigate seasonal movement and home range of brown trout Salmo trutta (size range 188–420 mm fork length, N = 30) in two reaches of the Noguera Pallaresa River (Ebro Basin, north‐east Spain) subjected to different flow regulation schemes. NP‐1 reach is a bypassed section with near natural flow conditions, whereas the downstream reach NP‐2 is subjected to daily pulsed flow discharge (i.e., hydropeaking) from an upstream hydropower station. Significant differences in home range size (95% kernel estimates) and seasonal movement pattern between study reaches were found. Mean home range size was (μ ± SE) 112.1 ± 11.5 m in the bypassed reach NP‐1 and increased significantly in the hydropeaking reach NP‐2 up to 237.9 ± 37.2 m. There was a large individual variability in fish home range size within reaches. Most of the seasonal differences in fish movement among reaches were associated with the spawning season. Pulsed discharge events in NP‐2 during daytime in summer (lasting about 3 hr and increasing water flow from 1 to 20 m3/s) did not cause significant displacements in either upstream or downstream direction during the duration of the event. Our results highlight the importance of habitat connectivity in hydropeaking streams due to the need of brown trout to move large distances among complementary habitats, necessary to complete their life cycle, compared with unregulated or more stable streams.Financial support was provided by the Biodiversity Conservation Plan of ENDESA, S.A. (ENEL Group). Carles Alcaraz acknowledges support from CERCA Programme (Generalitat de Catalunya)

Validated methodology for quantifying infestation levels of dreissenid mussels in environmental DNA (eDNA) samples

The zebra mussel (Dreissena polymorpha Pallas, 1771) and the quagga mussel (D. rostriformis Deshayes, 1838) are successful invasive bivalves with substantial ecological and economic impacts in freshwater systems once they become established. Since their eradication is extremely difficult, their detection at an early stage is crucial to prevent spread. In this study, we optimized and validated a qPCR detection method based on the histone H2B gene to quantify combined infestation levels of zebra and quagga mussels in environmental DNA samples. Our results show specific dreissenid DNA present in filtered water samples for which microscopic diagnostic identification for larvae failed. Monitoring a large number of locations for invasive dreissenid species based on a highly specific environmental DNA qPCR assay may prove to be an essential tool for management and control plans focused on prevention of establishment of dreissenid mussels in new locations.info:eu-repo/semantics/publishedVersio

Detection of Ostreopsis cf. ovata in environmental samples using an electrochemical DNA-based biosensor

Ostreopsis cf. ovata is a benthic microalga distributed in tropical and temperate regions worldwide which produces palytoxins (PlTXs). Herein, an electrochemical biosensor for the detection of this toxic microalga is described. The detection strategy involves isothermal recombinase polymerase amplification (RPA) of the target using tailed primers and a sandwich hybridisation assay on maleimide-coated magnetic beads immobilised on electrode arrays. The biosensor attained a limit of detection of 9 pg/μL of O. cf. ovata DNA (which corresponds to ~640 cells/L), with no interferences from two non-target Ostreopsis species (O. cf. siamensis and O. fattorussoi). The biosensor was applied to the analysis of planktonic and benthic environmental samples. Electrochemical O. cf. ovata DNA quantifications demonstrated an excellent correlation with other molecular methods (qPCR and colorimetric assays) and allowed the construction of a predictive regression model to estimate O. cf. ovata cell abundances. This new technology offer great potential to improve research, monitoring and management of O. cf. ovata and harmful algal blooms.info:eu-repo/semantics/acceptedVersio

Combined flooding and water quality monitoring during short extreme events using Sentinel 2: the case study of Gloria storm in Ebro delta

Short extreme events have significant impact on landscape and ecosystems in low-lying and exposed areas such as deltaic systems. In this context, this paper proposes a combined methodology for the mapping and monitoring of the flooding and water quality dynamics of coastal areas under extreme storms from Sentinel 2 imagery. The proposed methodology has been applied in a coastal bay of the Ebro Delta (Catalonia, NE Spain) to evaluate jointly the impact of Gloria storm (January 2020) in land-flooding and water quality. The experimental results show that the Gloria storm had a strong morphological impact and altered the water quality (chl-a) dynamics. The results show a recovery in terms of water quality after some weeks but in contrast the coastal morphology did not show the same degree of resilience. This paper is the first step of an overall goal that is to set the bases in a long term, for a workflow for rapid response and continuous monitoring of storm effects in coastal areas and/or highly valuable ecosystems such as the Ebro Delta.This research was partially funded by the project New-TechAqua (European Union's Programme H2020, GA 862658). J. Soriano-González held a pre-doctoral grant funded by by Agència de Gestió d’Ajuts Universitaris I de Recerca (2020FI_B2 00148)Peer ReviewedObjectius de Desenvolupament Sostenible::14 - Vida SubmarinaObjectius de Desenvolupament Sostenible::13 - Acció per al ClimaPostprint (published version

First results of phytoplankton spatial dynamics in two NW-Mediterranean bays from Chlorophyll-a estimates using Sentinel 2: potential implications for aquaculture

Shellfish aquaculture has a major socioeconomic impact on coastal areas, thus it is necessary to develop support tools for its management. In this sense, phytoplankton monitoring is crucial, as it is the main source of food for shellfish farming. The aim of this study was to assess the applicability of Sentinel 2 multispectral imagery (MSI) to monitor the phytoplankton biomass at Ebro Delta bays and to assess its potential as a tool for shellfish management. In situ chlorophyll-a data from Ebro Delta bays (NE Spain) were coupled with several band combination and band ratio spectral indices derived from Sentinel 2A levels 1C and 2A for time-series mapping. The best results (AIC = 72.17, APD < 10%, and MAE < 0.7 mg/m3) were obtained with a simple blue-to-green ratio applied over Rayleigh corrected images. Sentinel 2–derived maps provided coverage of the farm sites at both bays allowing relating the spatiotemporal distribution of phytoplankton with the environmental forcing under different states of the bays. The applied methodology will be further improved but the results show the potential of using Sentinel 2 MSI imagery as a tool for assessing phytoplankton spatiotemporal dynamics and to encourage better future practices in the management of the aquaculture in Ebro Delta bays.info:eu-repo/semantics/publishedVersio

Ionic partition and transport in multi-ionic channels: A Molecular Dynamics Simulation study of the OmpF bacterial porin

We performed all-atom molecular dynamics simulations studying the partition of ions and the ionic current through the bacterial porin OmpF and two selected mutants. The study is motivated by new interesting experimental findings concerning their selectivity and conductance behaviour at neutral pH. The mutations considered here are designed to study the effect of removal of negative charges present in the constriction zone of the wild type OmpF channel (which contains on one side a cluster with three positive residues and on the other side two negatively charged residues). Our results show that these mutations induce an exclusion of cations from the constriction zone of the channel, substantially reducing the flow of cations. In fact, the partition of ions inside the mutant channels is strongly inhomogeneous, with regions containing excess of cations and regions containing excess of anions. Interestingly, the overall number of cations inside the channel is larger than the number of anions in the two mutants, as in the OmpF wild type channel. We found that the differences in ionic charge inside these channels are justified by the differences in electric charge between the wild type OmpF and the mutants, following an electroneutral balance

The main drivers of methane emissions differ in the growing and flooded fallow seasons in Mediterranean rice fields

Purpose To assess 1) the cumulative greenhouse gas emissions –GHG- and global warming potential (methane – CH4- and nitrous oxide) from rice fields in the growing and fallow seasons, and 2) the environmental and agronomic drivers of CH4 emissions, and their relative capacity to explain CH4 variation. Methods A two-year multisite field experiment covering the agronomic and environmental variability of a rice growing area in NE Iberian Peninsula was conducted with monthly samplings of GHG and monitoring of both environmental and agronomic factors. Information-theoretic framework analysis was used to assess the relative contribution of the environmental and agronomic variables on methane emissions. Results Two thirds of the CH4 is emitted in the fallow season. Edaphic factors exert more influence during the growing season whereas agronomic factors have a higher impact in the fallow. The implications of these findings on the design of improved mitigation options rice are discussed. Conclusions Soils with higher soil sulphate concentration, bulk density and clay content emit less CH4 in growing season. In the fallow season, the rates of both straw input and nitrogen fertilization stimulate CH4 emissions.info:eu-repo/semantics/publishedVersio