479 research outputs found
How did the domestication of Fertile Crescent grain crops increase their yields?
The origins of agriculture, 10 000 years ago, led to profound changes in the biology of plants exploited as grain crops, through the process of domestication. This special case of evolution under cultivation led to domesticated cereals and pulses requiring humans for their dispersal, but the accompanying mechanisms causing higher productivity in these plants remain unknown. The classical view of crop domestication is narrow, focusing on reproductive and seed traits including the dispersal, dormancy and size of seeds, without considering whole-plant characteristics. However, the effects of initial domestication events can be inferred from consistent differences between traditional landraces and their wild progenitors.
We studied how domestication increased the yields of Fertile Crescent cereals and pulses using a greenhouse experiment to compare landraces with wild progenitors. We grew eight crops: barley, einkorn and emmer wheat, oat, rye, chickpea, lentil and pea. In each case, comparison of multiple landraces with their wild progenitors enabled us to quantify the effects of domestication rather than subsequent crop diversification. To reveal the mechanisms underpinning domestication-linked yield increases, we measured traits beyond those classically associated with domestication, including the rate and duration of growth, reproductive allocation, plant size and also seed mass and number.
Cereal and pulse crops had on average 50% higher yields than their wild progenitors, resulting from a 40% greater final plant size, 90% greater individual seed mass and 38% less chaff or pod material, although this varied between species. Cereal crops also had a higher seed number per spike compared with their wild ancestors. However, there were no differences in growth rate, total seed number, proportion of reproductive biomass or the duration of growth.
The domestication of Fertile Crescent crops resulted in larger seed size leading to a larger plant size, and also a reduction in chaff, with no decrease in seed number per individual, which proved a powerful package of traits for increasing yield. We propose that the important steps in the domestication process should be reconsidered, and the domestication syndrome broadened to include a wider range of traits
Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones
In this study, we elucidate the roles of the winged-helix transcription factor Foxa2 in ventral CNS development in zebrafish. Through cloning of monorail (mol), which we find encodes the transcription factor Foxa2, and phenotypic analysis of mol(-/-) embryos, we show that floorplate is induced in the absence of Foxa2 function but fails to further differentiate. In mol(-/-) mutants, expression of Foxa and Hh family genes is not maintained in floorplate cells and lateral expansion of the floorplate fails to occur. Our results suggest that this is due to defects both in the regulation of Hh activity in medial floorplate cells as well as cell-autonomous requirements for Foxa2 in the prospective laterally positioned floorplate cells themselves. Foxa2 is also required for induction and/or patterning of several distinct cell types in the ventral CNS. Serotonergic neurones of the raphe nucleus and the trochlear motor nucleus are absent in mol(-/-) embryos, and oculomotor and facial motoneurones ectopically occupy ventral CNS midline positions in the midbrain and hindbrain. There is also a severe reduction of prospective oligodendrocytes in the midbrain and hindbrain. Finally, in the absence of Foxa2, at least two likely Hh pathway target genes are ectopically expressed in more dorsal regions of the midbrain and hindbrain ventricular neuroepithelium, raising the possibility that Foxa2 activity may normally be required to limit the range of action of secreted Hh proteins
Fermion correlators in non-abelian holographic superconductors
We consider fermion correlators in non-abelian holographic superconductors.
The spectral function of the fermions exhibits several interesting features
such as support in displaced Dirac cones and an asymmetric distribution of
normal modes. These features are compared to similar ones observed in angle
resolved photoemission experiments on high T_c superconductors. Along the way
we elucidate some properties of p-wave superconductors in AdS_4 and discuss the
construction of SO(4) superconductors.Comment: 49 pages, 11 figure
Zero Sound in Strange Metallic Holography
One way to model the strange metal phase of certain materials is via a
holographic description in terms of probe D-branes in a Lifshitz spacetime,
characterised by a dynamical exponent z. The background geometry is dual to a
strongly-interacting quantum critical theory while the probe D-branes are dual
to a finite density of charge carriers that can exhibit the characteristic
properties of strange metals. We compute holographically the low-frequency and
low-momentum form of the charge density and current retarded Green's functions
in these systems for massless charge carriers. The results reveal a
quasi-particle excitation when z<2, which in analogy with Landau Fermi liquids
we call zero sound. The real part of the dispersion relation depends on
momentum k linearly, while the imaginary part goes as k^2/z. When z is greater
than or equal to 2 the zero sound is not a well-defined quasi-particle. We also
compute the frequency-dependent conductivity in arbitrary spacetime dimensions.
Using that as a measure of the charge current spectral function, we find that
the zero sound appears only when the spectral function consists of a single
delta function at zero frequency.Comment: 20 pages, v2 minor corrections, extended discussion in sections 5 and
6, added one footnote and four references, version published in JHE
Schr\"odinger Deformations of AdS_3 x S^3
We study Schr\"odinger invariant deformations of the AdS_3 x S^3 x T^4 (or
K3) solution of IIB supergravity and find a large class of solutions with
integer and half-integer dynamical exponents. We analyze the supersymmetries
preserved by our solutions and find an infinite number of solutions with four
supersymmetries. We study the solutions holographically and find that the dual
D1-D5 (or F1-NS5) CFT is deformed by irrelevant operators of spin one and two.Comment: 23 page
Determining Atlantic Ocean province contrasts and variations
The Atlantic Meridional Transect (AMT) series of twenty-five cruises over the past twenty years has produced a rich depth-resolved biogeochemical in situ data resource consisting of a wealth of core variables. These multiple core datasets, key to the operation of AMT, such as temperature, salinity, oxygen and inorganic nutrients, are often only used as ancillary measurements for contextualising hypothesis-driven process studies. In this paper these core in situ variables, alongside data drawn from satellite Earth Observation (EO) and modelling, have been analysed to determine characteristic oceanic province variations encountered over the last twenty years on the AMT through the Atlantic Ocean. The EO and modelling analysis shows the variations of key environmental variables in each province, such as surface currents, the net heat flux and subsequent large scale biological responses, such as primary production. The in situ core dataset analysis allows the variation in features such as the tropical oxygen minimum zone to be quantified as well as showing clear contrasts between the provinces in nutrient stoichiometry. Such observations and relationships can be used within basin scale biogeochemical models to set realistic variation ranges
Probes on D3-D7 Quark-Gluon Plasmas
We study the holographic dual model of quenched flavors immersed in a
quark-gluon plasma with massless dynamical quarks in the Veneziano limit. This
is modeled by embedding a probe D7 brane in a background where the backreaction
of massless D7 branes has been taken into account. The background, and hence
the effects, are perturbative in the Veneziano parameter N_f/N_c, therefore
giving small shifts of all magnitudes like the constituent mass, the quark
condensate, and several transport coefficients. We provide qualitative results
for the effect of flavor degrees of freedom on the probes. For example, the
meson melting temperature is enhanced, while the screening length is
diminished. The drag force is also enhanced.Comment: 31 pages, 17 figure
Kerr/CFT, dipole theories and nonrelativistic CFTs
We study solutions of type IIB supergravity which are SL(2,R) x SU(2) x
U(1)^2 invariant deformations of AdS_3 x S^3 x K3 and take the form of products
of self-dual spacelike warped AdS_3 and a deformed three-sphere. One of these
backgrounds has been recently argued to be relevant for a derivation of
Kerr/CFT from string theory, whereas the remaining ones are holographic duals
of two-dimensional dipole theories and their S-duals. We show that each of
these backgrounds is holographically dual to a deformation of the DLCQ of the
D1-D5 CFT by a specific supersymmetric (1,2) operator, which we write down
explicitly in terms of twist operators at the free orbifold point. The
deforming operator is argued to be exactly marginal with respect to the
zero-dimensional nonrelativistic conformal (or Schroedinger) group - which is
simply SL(2,R)_L x U(1)_R. Moreover, in the supergravity limit of large N and
strong coupling, no other single-trace operators are turned on. We thus propose
that the field theory duals to the backgrounds of interest are nonrelativistic
CFTs defined by adding the single Schroedinger-invariant (1,2) operator
mentioned above to the original CFT action. Our analysis indicates that the
rotating extremal black holes we study are best thought of as finite
right-moving temperature (non-supersymmetric) states in the above-defined
supersymmetric nonrelativistic CFT and hints towards a more general connection
between Kerr/CFT and two-dimensional non-relativistic CFTs.Comment: 48+8 pages, 4 figures; minor corrections and references adde
End points for sickle cell disease clinical trials: patient-reported outcomes, pain, and the brain
To address the global burden of sickle cell disease (SCD) and the need for novel therapies, the American Society of Hematology partnered with the US Food and Drug Administration to engage the work of 7 panels of clinicians, investigators, and patients to develop consensus recommendations for clinical trial end points. The panels conducted their work through literature reviews, assessment of available evidence, and expert judgment focusing on end points related to: patient-reported outcomes (PROs), pain (non-PROs), the brain, end-organ considerations, biomarkers, measurement of cure, and low-resource settings. This article presents the findings and recommendations of the PROs, pain, and brain panels, as well as relevant findings and recommendations from the biomarkers panel. The panels identify end points, where there were supporting data, to use in clinical trials of SCD. In addition, the panels discuss where further research is needed to support the development and validation of additional clinical trial end points
Guillain-Barré syndrome: a century of progress
In 1916, Guillain, Barré and Strohl reported on two cases of acute flaccid paralysis with high cerebrospinal fluid protein levels and normal cell counts — novel findings that identified the disease we now know as Guillain–Barré syndrome (GBS). 100 years on, we have made great progress with the clinical and pathological characterization of GBS. Early clinicopathological and animal studies indicated that GBS was an immune-mediated demyelinating disorder, and that severe GBS could result in secondary axonal injury; the current treatments of plasma exchange and intravenous immunoglobulin, which were developed in the 1980s, are based on this premise. Subsequent work has, however, shown that primary axonal injury can be the underlying disease. The association of Campylobacter jejuni strains has led to confirmation that anti-ganglioside antibodies are pathogenic and that axonal GBS involves an antibody and complement-mediated disruption of nodes of Ranvier, neuromuscular junctions and other neuronal and glial membranes. Now, ongoing clinical trials of the complement inhibitor eculizumab are the first targeted immunotherapy in GBS
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