368 research outputs found
Live imaging of DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter activity reveals dynamic changes in cell identity at the microcallus surface of Arabidopsis embryonic suspensions
Key message Transgenic DRN::erGFP and DRNL::erGFP reporters access the window from explanting Arabidopsis embryos to callus formation and provide evidence for the acquisition of shoot meristem cell fates at the microcalli surface. Abstract The DORNRÖSCHEN (DRN) and DORNRÖSCHEN-LIKE (DRNL) genes encode AP2-type transcription factors, which are activated shortly after fertilisation in the zygotic Arabidopsis embryo. We have monitored established transgenic DRN::erGFP and DRNL::erGFP reporter lines using live imaging, for expression in embryonic suspension cultures and our data show that transgenic fluorophore markers are suitable to resolve dynamic changes of cellular identity at the surface of microcalli and enable fluorescence-activated cell sorting. Although DRN::erGFP and DRNL::erGFP are both activated in surface cells, their promoter activity marks different cell identities based on real-time PCR experiments and whole transcriptome microarray data. These transcriptome analyses provide no evidence for the maintenance of embryogenic identity under callus-inducing high-auxin tissue culture conditions but are compatible with the acquisition of shoot meristem cell fates at the surface of suspension calli
Guidelines on the use of Structure from Motion Photogrammetry in Geomorphic Research
As a topographic modelling technique, structure-from-motion (SfM) photogrammetry combines the utility of digital photogrammetry with a flexibility and ease of use derived from multi-view computer vision methods. In conjunction with the rapidly increasing availability of imagery, particularly from unmanned aerial vehicles, SfM photogrammetry represents a powerful tool for geomorphological research. However, to fully realize this potential, its application must be carefully underpinned by photogrammetric considerations, surveys should be reported in sufficient detail to be repeatable (if practical) and results appropriately assessed to understand fully the potential errors involved. To deliver these goals, robust survey and reporting must be supported through (i) using appropriate survey design, (ii) applying suitable statistics to identify systematic error (bias) and to estimate precision within results, and (iii) propagating uncertainty estimates into the final data products
Guidelines on the use of Structure from Motion Photogrammetry in Geomorphic Research
As a topographic modelling technique, structure-from-motion (SfM) photogrammetry combines the utility of digital photogrammetry with a flexibility and ease of use derived from multi-view computer vision methods. In conjunction with the rapidly increasing availability of imagery, particularly from unmanned aerial vehicles, SfM photogrammetry represents a powerful tool for geomorphological research. However, to fully realize this potential, its application must be carefully underpinned by photogrammetric considerations, surveys should be reported in sufficient detail to be repeatable (if practical) and results appropriately assessed to understand fully the potential errors involved. To deliver these goals, robust survey and reporting must be supported through (i) using appropriate survey design, (ii) applying suitable statistics to identify systematic error (bias) and to estimate precision within results, and (iii) propagating uncertainty estimates into the final data products
Space-time Phase Transitions in Driven Kinetically Constrained Lattice Models
Kinetically constrained models (KCMs) have been used to study and understand
the origin of glassy dynamics. Despite having trivial thermodynamic properties,
their dynamics slows down dramatically at low temperatures while displaying
dynamical heterogeneity as seen in glass forming supercooled liquids. This
dynamics has its origin in an ergodic-nonergodic first-order phase transition
between phases of distinct dynamical "activity". This is a "space-time"
transition as it corresponds to a singular change in ensembles of trajectories
of the dynamics rather than ensembles of configurations. Here we extend these
ideas to driven glassy systems by considering KCMs driven into non-equilibrium
steady states through non-conservative forces. By classifying trajectories
through their entropy production we prove that driven KCMs also display an
analogous first-order space-time transition between dynamical phases of finite
and vanishing entropy production. We also discuss how trajectories with rare
values of entropy production can be realized as typical trajectories of a
mapped system with modified forces
Low-temperature dynamical simulation of spin-boson systems
The dynamics of spin-boson systems at very low temperatures has been studied
using a real-time path-integral simulation technique which combines a
stochastic Monte Carlo sampling over the quantum fluctuations with an exact
treatment of the quasiclassical degrees of freedoms. To a large degree, this
special technique circumvents the dynamical sign problem and allows the
dynamics to be studied directly up to long real times in a numerically exact
manner. This method has been applied to two important problems: (1) crossover
from nonadiabatic to adiabatic behavior in electron transfer reactions, (2) the
zero-temperature dynamics in the antiferromagnetic Kondo region 1/2<K<1 where K
is Kondo's parameter.Comment: Phys. Rev. B (in press), 28 pages, 6 figure
Scale-free static and dynamical correlations in melts of monodisperse and Flory-distributed homopolymers: A review of recent bond-fluctuation model studies
It has been assumed until very recently that all long-range correlations are
screened in three-dimensional melts of linear homopolymers on distances beyond
the correlation length characterizing the decay of the density
fluctuations. Summarizing simulation results obtained by means of a variant of
the bond-fluctuation model with finite monomer excluded volume interactions and
topology violating local and global Monte Carlo moves, we show that due to an
interplay of the chain connectivity and the incompressibility constraint, both
static and dynamical correlations arise on distances . These
correlations are scale-free and, surprisingly, do not depend explicitly on the
compressibility of the solution. Both monodisperse and (essentially)
Flory-distributed equilibrium polymers are considered.Comment: 60 pages, 49 figure
Macromolecular theory of solvation and structure in mixtures of colloids and polymers
The structural and thermodynamic properties of mixtures of colloidal spheres
and non-adsorbing polymer chains are studied within a novel general
two-component macromolecular liquid state approach applicable for all size
asymmetry ratios. The dilute limits, when one of the components is at infinite
dilution but the other concentrated, are presented and compared to field theory
and models which replace polymer coils with spheres. Whereas the derived
analytical results compare well, qualitatively and quantitatively, with
mean-field scaling laws where available, important differences from ``effective
sphere'' approaches are found for large polymer sizes or semi-dilute
concentrations.Comment: 23 pages, 10 figure
Testing "microscopic" theories of glass-forming liquids
We assess the validity of "microscopic" approaches of glass-forming liquids
based on the sole k nowledge of the static pair density correlations. To do so
we apply them to a benchmark provided by two liquid models that share very
similar static pair density correlation functions while disp laying distinct
temperature evolutions of their relaxation times. We find that the approaches
are unsuccessful in describing the difference in the dynamical behavior of the
two models. Our study is not exhausti ve, and we have not tested the effect of
adding corrections by including for instance three-body density correlations.
Yet, our results appear strong enough to challenge the claim that the slowd own
of relaxation in glass-forming liquids, for which it is well established that
the changes of the static structure factor with temperature are small, can be
explained by "microscopic" appr oaches only requiring the static pair density
correlations as nontrivial input.Comment: 10 pages, 7 figs; Accepted to EPJE Special Issue on The Physics of
Glasses. Arxiv version contains an addendum to the appendix which does not
appear in published versio
An optimization principle for deriving nonequilibrium statistical models of Hamiltonian dynamics
A general method for deriving closed reduced models of Hamiltonian dynamical
systems is developed using techniques from optimization and statistical
estimation. As in standard projection operator methods, a set of resolved
variables is selected to capture the slow, macroscopic behavior of the system,
and the family of quasi-equilibrium probability densities on phase space
corresponding to these resolved variables is employed as a statistical model.
The macroscopic dynamics of the mean resolved variables is determined by
optimizing over paths of these probability densities. Specifically, a cost
function is introduced that quantifies the lack-of-fit of such paths to the
underlying microscopic dynamics; it is an ensemble-averaged, squared-norm of
the residual that results from submitting a path of trial densities to the
Liouville equation. The evolution of the macrostate is estimated by minimizing
the time integral of the cost function. The value function for this
optimization satisfies the associated Hamilton-Jacobi equation, and it
determines the optimal relation between the statistical parameters and the
irreversible fluxes of the resolved variables, thereby closing the reduced
dynamics. The resulting equations for the macroscopic variables have the
generic form of governing equations for nonequilibrium thermodynamics, and they
furnish a rational extension of the classical equations of linear irreversible
thermodynamics beyond the near-equilibrium regime. In particular, the value
function is a thermodynamic potential that extends the classical dissipation
function and supplies the nonlinear relation between thermodynamics forces and
fluxes
The role of civil society actors in peacemaking : the case of Guatemala
This article builds upon recent scholarship in critical peace studies that focuses on the role of civil society actors in formal peacemaking processes, in short, peace talks, and post-conflict peacebuilding. The article specifically explores the role of civil society actors in the Guatemalan peace process. The research addresses the possible tensions and potential complementarities in processes where civil society enjoys a mandated role in centralised, formal peace negotiations carried out between the state and armed actors in talks levied within the liberal peace framework. In the case of Guatemala, non-state actors participated to an unprecedented extent in the peace negotiations, and Guatemala has not relapsed into armed conflict. However, post-conflict Guatemala is a violent and unstable country. Consequently, the study challenges the assumption that peacemaking is necessarily more successful in those instances where provisions have been established to guarantee the participation of civil society.PostprintPeer reviewe
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