Antarctic Sea Ice Variability and Trends, 1979-2010

In sharp contrast to the decreasing sea ice coverage of the Arctic, in the Antarctic the sea ice cover has, on average, expanded since the late 1970s. More specifically, satellite passive-microwave data for the period November 1978 - December 2010 reveal an overall positive trend in ice extents of 17,100 +/- 2,300 square km/yr. Much of the increase, at 13,700 +/- 1,500 square km/yr, has occurred in the region of the Ross Sea, with lesser contributions from the Weddell Sea and Indian Ocean. One region, that of the Bellingshausen/Amundsen Seas, has, like the Arctic, instead experienced significant sea ice decreases, with an overall ice extent trend of -8,200 +/- 1,200 square km/yr. When examined through the annual cycle over the 32-year period 1979-2010, the Southern Hemisphere sea ice cover as a whole experienced positive ice extent trends in every month, ranging in magnitude from a low of 9,100 +/- 6,300 square km/yr in February to a high of 24,700 +/- 10,000 square km/yr in May. The Ross Sea and Indian Ocean also had positive trends in each month, while the Bellingshausen/Amundsen Seas had negative trends in each month, and the Weddell Sea and Western Pacific Ocean had a mixture of positive and negative trends. Comparing ice-area results to ice-extent results, in each case the ice-area trend has the same sign as the ice-extent trend, but differences in the magnitudes of the two trends identify regions with overall increasing ice concentrations and others with overall decreasing ice concentrations. The strong pattern of decreasing ice coverage in the Bellingshausen/Amundsen Seas region and increasing ice coverage in the Ross Sea region is suggestive of changes in atmospheric circulation. This is a key topic for future research

Open orbifold Gromov-Witten invariants of [C^3/Z_n]: localization and mirror symmetry

We develop a mathematical framework for the computation of open orbifold Gromov-Witten invariants of [C^3/Z_n], and provide extensive checks with predictions from open string mirror symmetry. To this aim we set up a computation of open string invariants in the spirit of Katz-Liu, defining them by localization. The orbifold is viewed as an open chart of a global quotient of the resolved conifold, and the Lagrangian as the fixed locus of an appropriate anti-holomorphic involution. We consider two main applications of the formalism. After warming up with the simpler example of [C^3/Z_3], where we verify physical predictions of Bouchard, Klemm, Marino and Pasquetti, the main object of our study is the richer case of [C^3/Z_4], where two different choices are allowed for the Lagrangian. For one choice, we make numerical checks to confirm the B-model predictions; for the other, we prove a mirror theorem for orbifold disc invariants, match a large number of annulus invariants, and give mirror symmetry predictions for open string invariants of genus \leq 2.Comment: 44 pages + appendices; v2: exposition improved, misprints corrected, version to appear on Selecta Mathematica; v3: last minute mistake found and fixed for the symmetric brane setup of [C^3/Z_4]; in pres

graphite - a Bioconductor package to convert pathway topology to gene network

BACKGROUND: Gene set analysis is moving towards considering pathway topology as a crucial feature. Pathway elements are complex entities such as protein complexes, gene family members and chemical compounds. The conversion of pathway topology to a gene/protein networks (where nodes are a simple element like a gene/protein) is a critical and challenging task that enables topology-based gene set analyses. Unfortunately, currently available R/Bioconductor packages provide pathway networks only from single databases. They do not propagate signals through chemical compounds and do not differentiate between complexes and gene families. RESULTS: Here we present graphite, a Bioconductor package addressing these issues. Pathway information from four different databases is interpreted following specific biologically-driven rules that allow the reconstruction of gene-gene networks taking into account protein complexes, gene families and sensibly removing chemical compounds from the final graphs. The resulting networks represent a uniform resource for pathway analyses. Indeed, graphite provides easy access to three recently proposed topological methods. The graphite package is available as part of the Bioconductor software suite. CONCLUSIONS: graphite is an innovative package able to gather and make easily available the contents of the four major pathway databases. In the field of topological analysis graphite acts as a provider of biological information by reducing the pathway complexity considering the biological meaning of the pathway elements

Nod2 Deficiency in mice is Associated with Microbiota Variation Favouring the Expansion of mucosal CD4+ LAP+ Regulatory Cells

Nucleotide-binding Oligomerization Domain-2 (NOD2) mutations are associated with an increased risk to develop Crohn's Disease. In previous studies, we have shown that Nod2-/- mice manifest increased proportion of Lamina Propria (LP) CD4+ LAP+ Foxp3- regulatory cells, when compared with Nod2+/+ mice, while CD4+ Foxp3 + regulatory cells were not affected. Here, we investigated the Nod2 gut microbiota, by 16S rRNA pyrosequencing, at steady state and after TNBS-colitis induction in mice reared separately or in cohousing, correlating the microbial profiles with LP regulatory T cells proportion and tissue cytokines content. We found that enrichment of Rikenella and Alistipes (Rikenellaceae) in Nod2-/- mice at 8 weeks of age reared separately was associated with increased proportion of CD4+ LAP+ Foxp3- cells and less severe TNBS-colitis. In co-housed mice the acquisition of Rickenellaceae by Nod2+/+ mice was associated with increased CD4+ LAP+ Foxp3- proportion and less severe colitis. Severe colitis was associated with enrichment of gram-negative pathobionts (Escherichia and Enterococcus), while less severe colitis with protective bacteria (Barnesiella, Odoribacter and Clostridium IV). Environmental factors acting on genetic background with different outcomes according to their impact on microbiota, predispose in different ways to inflammation. These results open a new scenario for therapeutic attempt to re-establish eubiosis in Inflammatory Bowel Disease patients with NOD2 polymorphisms

Avaliação da seletividade inicial de herbicidas para o tomateiro por meio da análise de fluorescência da clorofila.

Objetivou-se com este trabalho analisar a fluorescência da clorofila por meio da avaliação da taxa de transporte de eletrons em tomateiro como forma de avaliar a seletividade inicial de hervicidas aplicados em pré-transplate

Comparison of the initial ovarian response, the synchrony of oestrus and ovulation and chronic stress response after administration of 100 or 250 μg of GnRH to randomly cycling Bos indicus cattle

Objective: This study investigated the effects of administering saline, 100 or 250 μg of gonadotrophin releasing hormone (GnRH) on ovarian response, synchrony of oestrus and ovulation and chronic stress response in Bos indicus cattle. Design: Randomised control. Methods: Animals were either left untreated (n = 20) or on day 0 treated with an intravaginal progesterone releasing device and either saline (n = 24), 100 μg (n = 35), or 250 (n = 35) μg of GnRH, intramuscular (IM). Blood was sampled 1.4 h after administration of treatment to monitor concentrations of luteinising hormone (LH) and P4 in serum and again 5 days later. On day 5 intravaginal P4 releasing device were removed, cloprostenol was administered IM and again 8 h later. Oestrus and ovulation were then monitored with ultrasonography for 6.5 days. Hair was clipped on day 55 for analysis of hair cortisol concentrations (HCC). Results: No significant differences were found between Saline and GnRH treatments in the odds of inducing a new corpus luteum (CL) and the synchrony of oestrus or ovulation. HCC did not differ significantly between treatments. Mean concentrations of LH in serum on day 0 were less in the Saline compared to 100 and 250 μg GnRH treatments but did not differ between different doses of GnRH. Conclusion: Mean concentrations of LH and the odds of inducing a new CL were not increased after administering 250 μg compared to 100 μg of GnRH. Animal handling events in the study did not influence HCC. Further research is needed to better optimise responses to GnRH in B. indicus cattle

High resolution spectroscopy in the XUV with pairs of mutually coherent and time-delayed laser harmonics

We present a Ramsey technique using high-order harmonics for high-resolution atomic spectroscopy in the extreme ultraviolet. Pairs of time-delayed and phase-coherent harmonic pulses generated by the interaction of ultrashort and intense laser pulses with a noble gas are used to study excited states of krypton

On the Low-Frequency Dynamics of Turbulent Separation Bubbles

The low-frequency modal and non-modal stability characteristics of an incompressible, pressure-gradient-induced turbulent separation bubble (TSB) are investigated with the objective of studying the mechanism responsible for the low-frequency contraction and expansion (breathing) commonly observed in experimental studies. The configuration of interest is a TSB generated on a flat test surface by a succession of adverse and favourable pressure gradients. The base flow selected for the analysis is the average TSB from the direct numerical simulation of Coleman et al. (J. Fluid Mech., vol. 847, 2018). Global linear stability analysis reveals that the flow is globally stable for wavenumbers. The mode closest to the stability threshold appears to occur at zero frequency and low, non-zero spanwise wavenumber. Resolvent analysis is then employed to examine the forced dynamics of the flow. At low frequency, a region of low, non-zero spanwise wavenumber is also discernible, where the receptivity appears to be driven by the identified weakly damped global mode. The results from resolvent analysis are compared to the unsteady experimental database of Le Floc'h et al. (J. Fluid Mech., vol. 902, 2020) in a similar TSB flow. The alignment between the optimal response and the first spectral proper orthogonal decomposition mode computed from the experiments is shown to exceed 95 %, while the spanwise wavenumber of the optimal response is consistent with that of the low-frequency breathing motion captured experimentally. This indicates that the fluctuations observed experimentally at low frequency closely match the response computed from resolvent analysis. Based on these results, we propose that the forced dynamics of the flow, driven by the weakly damped global mode, serve as a plausible mechanism for the origin of the low-frequency breathing motion commonly observed in experimental studies of TSBs

Treatment of HER2+ metastatic salivary ductal carcinoma in a pregnant woman: a case report

Salivary duct carcinoma (SDC) is a rare and aggressive malignancy with a high mortality and poor response to treatment in the advanced setting. Human epidermal growth factor 2 (HER2) can be amplified in a fraction of SDC. We describe the case of HER2+ metastatic SDC of the submandibular gland in a young pregnant woman treated by multimodal treatment (chemotherapy, radiotherapy and targeted therapy). During pregnancy, a 27-year-old woman developed SDC of the left submandibular gland with lung and bone metastases. Given the HER2 overexpression, she was treated with trastuzumab, paclitaxel and cisplatin. Since the tumor had arisen during pregnancy, triptorelin was administered after delivery. A complete remission was observed, and after eight cycles of chemotherapy, radiotherapy was started in association with trastuzumab and triptorelin. A prolonged disease control and complete visceral remission were observed. Multimodal therapy based on patient's tumor characteristics showed good clinical efficacy in the treatment of metastatic SDC