Cauchy-perturbative matching revisited: tests in spherical symmetry

During the last few years progress has been made on several fronts making it possible to revisit Cauchy-perturbative matching (CPM) in numerical relativity in a more robust and accurate way. This paper is the first in a series where we plan to analyze CPM in the light of these new results. Here we start by testing high-order summation-by-parts operators, penalty boundaries and contraint-preserving boundary conditions applied to CPM in a setting that is simple enough to study all the ingredients in great detail: Einstein's equations in spherical symmetry, describing a black hole coupled to a massless scalar field. We show that with the techniques described above, the errors introduced by Cauchy-perturbative matching are very small, and that very long term and accurate CPM evolutions can be achieved. Our tests include the accretion and ring-down phase of a Schwarzschild black hole with CPM, where we find that the discrete evolution introduces, with a low spatial resolution of \Delta r = M/10, an error of 0.3% after an evolution time of 1,000,000 M. For a black hole of solar mass, this corresponds to approximately 5 s, and is therefore at the lower end of timescales discussed e.g. in the collapsar model of gamma-ray burst engines. (abridged)Comment: 14 pages, 20 figure

Adaptación mediante gain scheduling bajo Foundation Fieldbus

[Resumen] Se describe una alternativa de implementación de control adaptativo mediante administración de ganancia (gain scheduling) utilizando las técnicas de diseño que ofrece el estándar Fundation Fieldbu

Protein co-evolution, co-adaptation and interactions

Co-evolution has an important function in the evolution of species and it is clearly manifested in certain scenarios such as host–parasite and predator–prey interactions, symbiosis and mutualism. The extrapolation of the concepts and methodologies developed for the study of species co-evolution at the molecular level has prompted the development of a variety of computational methods able to predict protein interactions through the characteristics of co-evolution. Particularly successful have been those methods that predict interactions at the genomic level based on the detection of pairs of protein families with similar evolutionary histories (similarity of phylogenetic trees: mirrortree). Future advances in this field will require a better understanding of the molecular basis of the co-evolution of protein families. Thus, it will be important to decipher the molecular mechanisms underlying the similarity observed in phylogenetic trees of interacting proteins, distinguishing direct specific molecular interactions from other general functional constraints. In particular, it will be important to separate the effects of physical interactions within protein complexes (‘co-adaptation') from other forces that, in a less specific way, can also create general patterns of co-evolution

Inactivation of the monofunctional peptidoglycan glycosyltransferase SgtB allows Staphylococcus aureus to survive in the absence of lipoteichoic acid

The cell wall of Staphylococcus aureus is composed of peptidoglycan and the anionic polymers lipoteichoic acid (LTA) and wall teichoic acid. LTA is required for growth and normal cell morphology in S. aureus. Strains lacking LTA are usually viable only when grown under osmotically stabilizing conditions or after the acquisition of compensatory mutations. LTA-negative suppressor strains with inactivating mutations in gdpP, which resulted in increased intracellular c-di-AMP levels, were described previously. Here, we sought to identify factors other than c-di-AMP that allow S. aureus to survive without LTA. LTA-negative strains able to grow in unsupplemented medium were obtained and found to contain mutations in sgtB, mazE, clpX, or vraT. The growth improvement through mutations in mazE and sgtB was confirmed by complementation analysis. We also showed that an S. aureus sgtB transposon mutant, with the monofunctional peptidoglycan glycosyltransferase SgtB inactivated, displayed a 4-fold increase in the MIC of oxacillin, suggesting that alterations in the peptidoglycan structure could help bacteria compensate for the lack of LTA. Muropeptide analysis of peptidoglycans isolated from a wild-type strain and sgtB mutant strain did not reveal any sizable alterations in the peptidoglycan structure. In contrast, the peptidoglycan isolated from an LTA-negative ltaS mutant strain showed a significant reduction in the fraction of highly cross-linked peptidoglycan, which was partially rescued in the sgtB ltaS double mutant suppressor strain. Taken together, these data point toward an important function of LTA in cell wall integrity through its necessity for proper peptidoglycan assembly

Bilateral Pneumothoraces Following Central Venous Cannulation

We report the occurrence of a bilateral pneumothoraces after unilateral central venous catheterization of the right subclavian vein in a 70-year-old patient. The patient had no history of pulmonary or pleural disease and no history of cardiothoracic surgery. Two days earlier, she had a median laparotomy under general and epidural anaesthesia. Prior to the procedure, the patient was hemodynamically stable and her transcutaneous oxygen saturation was 97% in room air. We punctured the right pleural space before cannulation of the right subclavian vein. After the procedure, the patient slowly became hemodynamically instable with respiratory distress. A chest radiograph revealed a complete left-side pneumothorax and a mild right-side pneumothorax. The right-side pneumothorax became under tension after left chest tube insertion. The symptoms finally resolved after insertion of a right chest tube. After a diagnostic work-up, we suspect a congenital “Buffalo chests” explaining bilateral pneumothoraces and a secondary tension pneumothorax

A time-domain fourth-order-convergent numerical algorithm to integrate black hole perturbations in the extreme-mass-ratio limit

We obtain a fourth order accurate numerical algorithm to integrate the Zerilli and Regge-Wheeler wave equations, describing perturbations of nonrotating black holes, with source terms due to an orbiting particle. Those source terms contain the Dirac's delta and its first derivative. We also re-derive the source of the Zerilli and Regge-Wheeler equations for more convenient definitions of the waveforms, that allow direct metric reconstruction (in the Regge-Wheeler gauge).Comment: 30 pages, 12 figure

Locational preferences and spatial arrangement in the barrow landscape of Serra do Barbanza (North-western Iberia)

As anywhere else around the world, GIS is an essential tool in Galician Archaeology (NW Spain) when examining and analysing spatial data. This is also true for the study of mounds in that area, since spatial analysis and statistics have become increasingly used for contrasting hypotheses regarding the locational preferences of these monuments, usually inferred from observations made during fieldwork or taken from studies conducted elsewhere. Drawing on this basis, in this paper, we have analysed the locational patterns of the tumuli of the upper tracts of the Serra do Barbanza (Galicia, NW Spain). Using a site-predictive modelling approach, several environmental covariates were analysed in order to explore their potential role in explaining the distribution of prehistoric mounds in the area. Subsequently, we studied the clustering of these monuments via second-order modelling. Our results suggest that tumuli in the Serra do Barbanza tended to cluster on a very local scale, a trend that can only be explained by intended site spacing strategies that may have taken place over millennia. Finally, by using significance testing via Monte Carlo Simulation, we have modelled both the effect of possible preferences regarding the location of mounds and the potential impact of tradition, with pre-existent megaliths possibly fostering the construction of more monuments in the nearby areas