Denitrification in intrinsic and specific groundwater vulnerability assessment: A review

Several groundwater vulnerability methodologies have been implemented throughout the years to face the increasing worldwide groundwater pollution, ranging from simple rating methodologies to complex numerical, statistical, and hybrid methods. Most of these methods have been used to evaluate groundwater vulnerability to nitrate, which is considered the major groundwater contaminant worldwide. Together with dilution, the degradation of nitrate via denitrification has been acknowledged as a process that can reduce reactive nitrogen mass loading rates in both deep and shallow aquifers. Thus, denitrification should be included in groundwater vulnerability studies and integrated into the various methodologies. This work reviewed the way in which denitrification has been considered within the vulnerability assessment methods and how it could increase the reliability of the overall results. Rating and statistical methods often disregard or indirectly incorpo-rate denitrification, while numerical models make use of kinetic reactions that are able to quantify the spatial and temporal variations of denitrification rates. Nevertheless, the rating methods are still the most utilized, due to their linear structures, especially in watershed studies. More efforts should be paid in future studies to implement, calibrate, and validate user-friendly vulnerability assessment methods that are able to deal with denitrification capacity and rates at large spatial and temporal scales

Quantifying the impact of evapotranspiration at the aquifer scale via groundwater modelling and MODIS Data

none4noIn shallow alluvial aquifers characterized by coarse sediments, the evapotranspiration rates from groundwater are often not accounted for due to their low capillarity. Nevertheless, this assumption can lead to errors in the hydrogeological balance estimation. To quantify such impacts, a numerical flow model using MODFLOW was set up for the Tronto river alluvial aquifer (Italy). Different estimates of evapotranspiration rates were retrieved from the online Moderate Resolution Imaging Spectroradiometer (MODIS) database and used as input values. The numerical model was calibrated against piezometric heads collected in two snapshots (mid-January 2007 and mid-June 2007) in monitoring wells distributed along the whole alluvial aquifer. The model performance was excellent, with all the statistical parameters indicating very good agreement between calculated and observed heads. The model validation was performed using baseflow data of the Tronto river compared with the calculated aquifer-river exchanges in both of the simulated periods. Then, a series of numerical scenarios indicated that, although the model performance did not vary appreciably regardless of whether it included evapotranspiration from groundwater, the aquifer-river exchanges were influenced significantly. This study showed that evapotranspiration from shallow groundwater accounts for up to 21% of the hydrogeological balance at the aquifer scale and that baseflow observations are pivotal in quantifying the evapotranspiration impact.openColombani N.; Gaiolini M.; Busico G.; Postacchini M.Colombani, N.; Gaiolini, M.; Busico, G.; Postacchini, M

Parallelisation Technique for Serial 3D Seismic Codes: SMS Approach

We investigate a fast and easy way to parallelise seismological serial codes mainly oriented for simulating the seismic wave propagation through anelastic dissipative media. Having an efficient modelling tool is important in both assessing strong ground motion and mitigation of seismic hazard when the site effects are considered, and in crustal propagation when the crustal geological structures are of interest. Our chosen case study is repre- sentative of a set of such seismological 3D problems. The Scalable Modelling System (SMS) tool for paralleliza- tion is considered. The IBM SP5 native compiler has been used. Results such as Speed-Up and Efficiency are shown and discussed. SMS can run both in shared and distributed memory environments. The greater advantages of using SMS in such environments become apparent with the utilisation of a higher number of multiprocessor machines arranged in a cluster. We also demonstrate how successful porting from serial to parallel codes is re- alised by way of minimal instructions (6% of the serial original code only) provided that an ad hoc profiling analysis of the serial code is first performed

Actual and forecasted vulnerability assessment to seawater intrusion via galdit-susi in the volturno river mouth (Italy)

Coastal areas have become increasingly vulnerable to groundwater salinization, especially in the last century, due to the combined effects of climate change and growing anthropization. In this study, a novel methodology named GALDIT-SUSI was applied in the floodplain of the Volturno River mouth for the current (2018) and future (2050) evaluation of seawater intrusion accounting for the expected subsidence and groundwater salinization rates. Several input variables such as digital surface model, land use classification, subsidence rate and drainage system have been mapped via remote sensing resources. The current assessment highlights how areas affected by salinization coincide with the semiperennial lagoons and inland depressed areas where paleosaline groundwaters are present. The future assessment (2050) shows a marked increase of salinization vulnerability in the coastal strip and in the most depressed areas. The results highlight that the main vulnerability driver is the Revelle index, while predicted subsidence and recharge rates will only slightly affect groundwater salinization. This case study indicates that GALDIT-SUSI is a reliable and easy-to-use tool for the assessment of groundwater salinization in many coastal regions of the world

A thermophysical study of the melting process in alkyl chain metal n-alkanoates: The thallium (I) series

The peculiar thermal behavior of the thallium(I) n-alkanoates series (consisting in several transitions between polymorphic and mesomorphic phases) in comparison with other metallic n-alkanoates series is stated. The allowance of highly accurate adiabatic heat capacity data permits a study of the CH2CH2 contributions to the lattice heat capacity curve at low temperature. Moreover, in this series an anomalous gradual enhancement of the lattice heat capacity has been interpreted from vibrational spectroscopy results as a noncooperative effect due to the internal hindered rotation of the alkyl chain (formation of gauche defects, even in the solid state). The thermodynamics of the “stepwise melting process” from the totally ordered solid at low temperature to the isotropic liquid is based on a revised lattice heat-capacity curve. This was used to evaluate the energy and entropy not only of the clear first order transitions present in the series but also of the described noncooperative effect. The CH2CH2 enthalpy and entropy contribution for this series is estimated and a comparison with the published values for other series is carried out. Moreover, the texture of the mesophases is revealed by polarized light microscopy. © 1999 American Institute of Physics.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/69602/2/JCPSA6-111-8-3590-1.pd

Hantavirus transmission in the United States.

In 1996, investigation of a hantavirus pulmonary syndrome (HPS) outbreak in southern Argentina found evidence of person-to-person transmission of a hantavirus. The infection control ramifications of this finding led to this review of hantavirus epidemiology in the United States; the review suggests that Sin Nombre virus infection is rarely, if ever, transmitted from person to person and that existing guidelines for prevention of HPS remain appropriate for North America

SMO mutations confer poor prognosis in malignant pleural mesothelioma

Background: Malignant pleural mesothelioma (MPM) is an aggressive tumor but approximately 12% of patients survive more than 3 years. The biological differences underlying better outcomes are not known. Several targeted agents and immunotherapy have been ineffective. Hedgehog (Hh) is one emerging pathway. We compared the biological profiles of patients with different survival, investigating the most frequently altered genes, including the Hh pathway. Methods: We analyzed 56 MPM. A 36-month overall survival (OS) cut-off divided patients into 32 normo (NS) and 24 long (LS) survivors. We used next generation sequencing to test 21 genes, immunohistochemistry to evaluate SMO expression. Mutation differences between NS and LS and their associations with clinical features were analysed by Fisher's test, OS with the Kaplan-Meier method and its association with mutations by univariate and multivariate Cox proportional hazard models. Results: Clinical features were similar in both groups. Eighteen out of 56 patients (32%) were wild-type for the genes analysed. At least five had mutations in BAP1, NF2, TP53, SMO and PTCH1 with no significant differences between the groups except for SMO. SMO, a member of the Hh pathway, was mutated only in NS (15.6%) and only SMO mutations were significantly associated with poor prognosis at univariate (HR =4.36, 95% CI: 2.32-8.18, P<0.0001) and multivariate (HR =9.2, 95% CI: 3.0-28.4, P=0.0001) analysis. All SMO mutated patients expressed high protein levels. Conclusions: SMO mutations were clearly associated with worse prognosis. SMO may be a therapeutic target but this needs to be confirmed in a prospective trial

Gastroenteropancreatic High-Grade Neuroendocrine Neoplasms: Histology and Molecular Analysis, Two Sides of the Same Coin

Background: In gastroenteropancreatic (GEP) high-grade neuroendocrine neoplasms (H-NENs), Ki-67 threshold of 55% defines three prognosis subclasses: neuroendocrine tumor (NET) G3, neuroendocrine carcinoma (NEC) <55%, and NEC ≥55%. We investigated whether the molecular profiling of H-NENs differs among these subcategories and evaluated potential therapeutic targets, including PD-L1. Methods: In GEP-NEN patients, we evaluated: (i) 55% threshold for Ki-67 labeling index for further stratifying NEC and (ii) immunoreactivity and gene mutations by immunohistochemistry and targeted next-generation sequencing (T-NGS). Results: Fifteen NETs G3 and 39 NECs were identified. Ki-67 labeling index was <55% in 9 NECs and ≥55% in 30 NECs. Gene mutations by NGS (TP53, 32.9%; KRAS, 5.5%; BRAF, 4.1%) were detected in 46.6% NENs, significantly enriched in NEC ≥55% (76.7%) compared to NEC <55% (55.6%) or NET (20.0%). PD-L1 staining in tumor-infiltrating lymphocytes was observed in NEC ≥55% (36.7%; p = 0.03). Median OS was 4.3 years in NET G3, 1.8 years in NEC <55%, and 0.7 years in NEC ≥55% (p <0.0001); it was 2.3 years with NGS wild-type, 0.7 years with ≥1 mutation (p <0.0001), 0.8 years in PD-L1-positive patients, and 1.7 years in PD-L1-negative subjects (p = 0.0004). In multivariate analysis, only the proposed subclassification approach yielded statistically significant differences between groups (NEC <55% vs. NET G3, HR 14.1, 95% CI 2.2-89.8, p = 0.005; NEC ≥55% vs. NET G3, HR 25.8, 95% CI 3.9-169, p = 0.0007). Conclusions: These findings identify NEC ≥55% as a biologically and prognostically distinct subtype and pave the way for more personalized treatment

Cancer Associated Fibroblasts and Senescent Thyroid Cells in the Invasive Front of Thyroid Carcinoma

Thyroid carcinoma (TC) comprises several histotypes with different aggressiveness, from well (papillary carcinoma, PTC) to less differentiated forms (poorly differentiated and anaplastic thyroid carcinoma, PDTC and ATC, respectively). Previous reports have suggested a functional role for cancer-associated fibroblasts (CAFs) or senescent TC cells in the progression of PTC. In this study, we investigated the presence of CAFs and senescent cells in proprietary human TCs including PTC, PDTC, and ATC. Screening for the driving lesions BRAFV600E and N/H/KRAS mutations, and gene fusions was also performed to correlate results with tumor genotype. In samples with unidentified drivers, transcriptomic profiles were used to establish a BRAF- or RAS-like molecular subtype based on a gene signature derived from The Cancer Genome Atlas. By using immunohistochemistry, we found co-occurrence of stromal CAFs and senescent TC cells at the tumor invasive front, where deposition of collagen (COL1A1) and expression of lysyl oxidase (LOX) enzyme were also detected, in association with features of local invasion. Concurrent high expression of CAFs and of the senescent TC cells markers, COL1A1 and LOX was confirmed in different TC histotypes in proprietary and public gene sets derived from Gene Expression Omnibus (GEO) repository, and especially in BRAF mutated or BRAF-like tumors. In this study, we show that CAFs and senescent TC cells co-occur in various histotypes of BRAF-driven thyroid tumors and localize at the tumor invasive front

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