Automated visual tracking for studying the ontogeny of zebrafish swimming

The zebrafish Danio rerio is a widely used model organism in studies of genetics, developmental biology, and recently, biomechanics. In order to quantify changes in swimming during all stages of development, we have developed a visual tracking system that estimates the posture of fish. Our current approach assumes planar motion of the fish, given image sequences taken from a top view. An accurate geometric fish model is automatically designed and fit to the images at each time frame. Our approach works across a range of fish shapes and sizes and is therefore well suited for studying the ontogeny of fish swimming, while also being robust to common environmental occlusions. Our current analysis focuses on measuring the influence of vertebra development on the swimming capabilities of zebrafish. We examine wild-type zebrafish and mutants with stiff vertebrae (stocksteif) and quantify their body kinematics as a function of their development from larvae to adult (mutants made available by the Hubrecht laboratory, The Netherlands). By tracking the fish, we are able to measure the curvature and net acceleration along the body that result from the fish's body wave. Here, we demonstrate the capabilities of the tracking system for the escape response of wild-type zebrafish and stocksteif mutant zebrafish. The response was filmed with a digital high-speed camera at 1500 frames s–1. Our approach enables biomechanists and ethologists to process much larger datasets than possible at present. Our automated tracking scheme can therefore accelerate insight in the swimming behavior of many species of (developing) fish

The ISS as a Testbed for Future Large Astronomical Observatories: The OpTIIX Demonstration Program

Future large (diameters in excess of approx. 10 m) astronomical observatories in space will need to employ advanced technologies if they are to be affordable. Many of these technologies are ready to be validated on orbit and the International Space Station (ISS) provides a suitable platform for such demonstrations. These technologies include low-cost, low-density, highly deformable mirror segments, coupled with advanced sensing and control methods. In addition, the ISS offers available telerobotic assembly techniques to build an optical testbed that embodies this new cost-effective approach to assemble and achieve diffraction-limited optical performance for very large space telescopes. Given the importance that NASA attaches to the recommendations of the National Academy of Sciences "Decadal Survey" process, essential capabilities and technologies will be demonstrated well in advance of the next Survey, which commences in 2019. To achieve this objective, the Jet Propulsion Laboratory (JPL), NASA Johnson Space Center (JSC), NASA Goddard Space Flight Center (GSFC), and the Space Telescope Science Institute (STScI) are carrying out a Phase A/B study of the Optical Testbed and Integration on ISS eXperiment (OpTIIX). The overarching goal is to demonstrate well before the end of this decade key capabilities intended to enable very large optical systems in the decade of the 2020s. Such a demonstration will retire technical risk in the assembly, alignment, calibration, and operation of future space observatories. The OpTIIX system, as currently designed, is a six-hexagon element, segmented visual-wavelength telescope with an edge-to-edge aperture of 1.4 m, operating at its diffraction limit

Pollen-Mediated Gene Flow from Genetically Modified Herbicide Resistant Creeping Bentgrass

Approximately 162 ha of multiple experimental fields of creeping bentgrass (Agrostis stolonifera L.) genetically modified for resistance to Roundup ®herbicide, were planted in central Oregon in 2002. When the fields flowered for the first time in the summer of 2003, a unique opportunity was presented to evaluate methods to monitor potential pollen-mediated gene flow from the experimental GM crop fields to compatible sentinel and resident plants that were located in surrounding, primarily non-agronomic areas

Plasmonic excitations in noble metals: The case of Ag

The delicate interplay between plasmonic excitations and interband transitions in noble metals is described by means of {\it ab initio} calculations and a simple model in which the conduction electron plasmon is coupled to the continuum of electron-hole pairs. Band structure effects, specially the energy at which the excitation of the $d$-like bands takes place, determine the existence of a subthreshold plasmonic mode, which manifests itself in Ag as a sharp resonance at 3.8 eV. However, such a resonance is not observed in the other noble metals. Here, this different behavior is also analyzed and an explanation is provided.Comment: 9 pages, 8 figure

The role of occupied d states in the relaxation of hot electrons in Au

We present first-principles calculations of electron-electron scattering rates of low-energy electrons in Au. Our full band-structure calculations indicate that a major contribution from occupied d states participating in the screening of electron-electron interactions yields lifetimes of electrons in Au with energies of $1.0-3.0 {\rm eV}$ above the Fermi level that are larger than those of electrons in a free-electron gas by a factor of $\sim 4.5$. This prediction is in agreement with a recent experimental study of ultrafast electron dynamics in Au(111) films (J. Cao {\it et al}, Phys. Rev. B {\bf 58}, 10948 (1998)), where electron transport has been shown to play a minor role in the measured lifetimes of hot electrons in this material.Comment: 4 pages, 2 figures, to appear in Phys. Rev.

Elucidating the relationship between DISC1, NDEL1 and NDE1 and the risk for schizophrenia: Evidence of epistasis and competitive binding

DISC1 influences susceptibility to psychiatric disease and related phenotypes. Intact functions of DISC1 and its binding partners, NDEL1 and NDE1, are critical to neurodevelopmental processes aberrant in schizophrenia (SZ). Despite evidence of an NDEL1–DISC1 protein interaction, there have been no investigations of the NDEL1 gene or the relationship between NDEL1 and DISC1 in SZ. We genotyped six NDEL1 single-nucleotide polymorphisms (SNPs) in 275 Caucasian SZ patients and 200 controls and tested for association and interaction between the functional SNP Ser704Cys in DISC1 and NDEL1. We also evaluated the relationship between NDE1 and DISC1 genotype and SZ. Finally, in a series of in vitro assays, we determined the binding profiles of NDEL1 and NDE1, in relation to DISC1 Ser704Cys. We observed a single haplotype block within NDEL1; the majority of variation was captured by NDEL1 rs1391768. We observed a significant interaction between rs1391768 and DISC1 Ser704Cys, with the effect of NDEL1 on SZ evident only against the background of DISC1 Ser704 homozygosity. Secondary analyses revealed no direct relationship between NDE1 genotype and SZ; however, there was an opposite pattern of risk for NDE1 genotype when conditioned on DISC1 Ser704Cys, with NDE1 rs3784859 imparting a significant effect but only in the context of a Cys-carrying background. In addition, we report opposing binding patterns of NDEL1 and NDE1 to Ser704 versus Cys704, at the same DISC1 binding domain. These data suggest that NDEL1 significantly influences risk for SZ via an interaction with DISC1. We propose a model where NDEL1 and NDE1 compete for binding with DISC1

Media language: Video practices

This project explores the blog as a context considering the articulations between the context and content (blog and videos) forming this project. In order to do so, hyperlinks to practitioners’ videos (uploaded to individual Vimeo accounts), are gathered together on a blog page. Contributors are asked to consider the prompt of a glass of water for a video-based active reflection on their practice. A glass of water is an object of the everyday, yet one often present in interviews; this project started as a series of interviews. The water or the glass can be present or not present in the video, for example materiality could be considered, or perhaps the ‘publicness’ connected with the water glass at a site of presentation could be explored. Other ways may be found. This is a collaborative work where practitioners survey their individual use of media through the prescribed method of digital video. The result of the work can be accessed on Seminar Project website ( http://www.kmbosy.com/blog/seminar-project)