A graph-theoretic condition for irreducibility of a set of cone preserving matrices

Given a closed, convex and pointed cone K in R^n , we present a result which infers K-irreducibility of sets of K-quasipositive matrices from strong connectedness of certain bipartite digraphs. The matrix-sets are defined via products, and the main result is relevant to applications in biology and chemistry. Several examples are presented

Directed transport of two interacting particles in a washboard potential

We study the conservative and deterministic dynamics of two nonlinearly interacting particles evolving in a one-dimensional spatially periodic washboard potential. A weak tilt of the washboard potential is applied biasing one direction for particle transport. However, the tilt vanishes asymptotically in the direction of bias. Moreover, the total energy content is not enough for both particles to be able to escape simultaneously from an initial potential well; to achieve transport the coupled particles need to interact cooperatively. For low coupling strength the two particles remain trapped inside the starting potential well permanently. For increased coupling strength there exists a regime in which one of the particles transfers the majority of its energy to the other one, as a consequence of which the latter escapes from the potential well and the bond between them breaks. Finally, for suitably large couplings, coordinated energy exchange between the particles allows them to achieve escapes -- one particle followed by the other -- from consecutive potential wells resulting in directed collective motion. The key mechanism of transport rectification is based on the asymptotically vanishing tilt causing a symmetry breaking of the non-chaotic fraction of the dynamics in the mixed phase space. That is, after a chaotic transient, only at one of the boundaries of the chaotic layer do resonance islands appear. The settling of trajectories in the ballistic channels associated with transporting islands provides long-range directed transport dynamics of the escaping dimer

Emergence of continual directed flow in Hamiltonian systems

We propose a minimal model for the emergence of a directed flow in autonomous Hamiltonian systems. It is shown that internal breaking of the spatio-temporal symmetries, via localised initial conditions, that are unbiased with respect to the transporting degree of freedom, and transient chaos conspire to form the physical mechanism for the occurrence of a current. Most importantly, after passage through the transient chaos, trajectories perform solely regular transporting motion so that the resulting current is of continual ballistic nature. This has to be distinguished from the features of transport reported previously for driven Hamiltonian systems with mixed phase space where transport is determined by intermittent behaviour exhibiting power-law decay statistics of the duration of regular ballistic periods

Nonlinear response of a linear chain to weak driving

We study the escape of a chain of coupled units over the barrier of a metastable potential. It is demonstrated that a very weak external driving field with suitably chosen frequency suffices to accomplish speedy escape. The latter requires the passage through a transition state the formation of which is triggered by permanent feeding of energy from a phonon background into humps of localised energy and elastic interaction of the arising breather solutions. In fact, cooperativity between the units of the chain entailing coordinated energy transfer is shown to be crucial for enhancing the rate of escape in an extremely effective and low-energy cost way where the effect of entropic localisation and breather coalescence conspire

From collective periodic running states to completely chaotic synchronised states in coupled particle dynamics

We consider the damped and driven dynamics of two interacting particles evolving in a symmetric and spatially periodic potential. The latter is exerted to a time-periodic modulation of its inclination. Our interest is twofold: Firstly we deal with the issue of chaotic motion in the higher-dimensional phase space. To this end a homoclinic Melnikov analysis is utilised assuring the presence of transverse homoclinic orbits and homoclinic bifurcations for weak coupling allowing also for the emergence of hyperchaos. In contrast, we also prove that the time evolution of the two coupled particles attains a completely synchronised (chaotic) state for strong enough coupling between them. The resulting `freezing of dimensionality' rules out the occurrence of hyperchaos. Secondly we address coherent collective particle transport provided by regular periodic motion. A subharmonic Melnikov analysis is utilised to investigate persistence of periodic orbits. For directed particle transport mediated by rotating periodic motion we present exact results regarding the collective character of the running solutions entailing the emergence of a current. We show that coordinated energy exchange between the particles takes place in such a manner that they are enabled to overcome - one particle followed by the other - consecutive barriers of the periodic potential resulting in collective directed motion

A hybrid spatiotemporal model of PCa dynamics and insights into optimal therapeutic strategies

Using a hybrid cellular automaton with stochastic elements, we investigate the effectiveness of multiple drug therapies on prostate cancer (PCa) growth. The ability of Androgen Deprivation Therapy to reduce PCa growth represents a milestone in prostate cancer treatment, nonetheless most patients eventually become refractory and develop castration-resistant prostate cancer. In recent years, a “second generation” drug called enzalutamide has been used to treat advanced PCa, or patients already exposed to chemotherapy that stopped responding to it. However, tumour resistance to enzalutamide is not well understood, and in this context, preclinical models and in silico experiments (numerical simulations) are key to understanding the mechanisms of resistance and to assessing therapeutic settings that may delay or prevent the onset of resistance. In our mathematical system, we incorporate cell phenotype switching to model the development of increased drug resistance, and consider the effect of the micro-environment dynamics on necrosis and apoptosis of the tumour cells. The therapeutic strategies that we explore include using a single drug (enzalutamide), and drug combinations (enzalutamide and everolimus or cabazitaxel) with different treatment schedules. Our results highlight the effectiveness of alternating therapies, especially alternating enzalutamide and cabazitaxel over a year, and a comparison is made with data taken from TRAMP mice to verify our findings

Rigorous computer-assisted bounds on the period doubling renormalisation fixed point and eigenfunctions in maps with critical point of degree 4

We gain tight rigorous bounds on the renormalisation fixed point for period doubling in families of unimodal maps with degree $4$ critical point. We use a contraction mapping argument to bound essential eigenfunctions and eigenvalues for the linearisation of the operator and for the operator controlling the scaling of added noise. Multi-precision arithmetic with rigorous directed rounding is used to bound operations in a space of analytic functions yielding tight bounds on power series coefficients and universal constants to over $320$ significant figures.Comment: 15 pages, 8 figure