14 research outputs found

    Properties of In silico designed 3-way junction nucleic acid motif for nanoparticles assembly

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    Organization of biological materials into specific two- and three-dimensional multifunctional scaffolds enabling to carry cell binding RNA aptamers, and therapeutic siRNA and miRNA for application in nanomedicine is a challenging task in the field of nucleic acid nanotechnology. In previous work, computer-assisted nucleic acid (NA) tetra-U/T three-way junction (3WJ) motif was designed to address questions related to assembly efficiency, versatility, stability, and immunotoxicity of various shape nanoparticles made of either RNA, or DNA, or 2’F-modified RNA strands and their hybrids. In this work we explore physicochemical properties of other 3WJ NA motif comprising 4T, 3T, 2T, 1T, and 0T links between helical stems and compare their utility as a building modules for triangular shape DNA nanoparticles. Assembly for these triangles have been verified using gel shift assays, the average hydrodynamic radius assessed by dynamic light scattering, the thermal stability determined by UV-melting experiments, and shape characterizations by AFM. We found that all DNA complexes assembled with high efficiency except the 0T construct. The overall dimension decreasing in the following order: 4T>3T>2T>1T from approximately 11nm to 7nm. The results from UV-melting experiment suggest that the most stable construct was the 0T structure and the least stable being the 4T-HP structure. This work is intended to demonstrate different design approaches of the triangular shaped Nucleic Acid complexes and highlight the importance of the thymidine linkages.Thesis (M.S.

    Properties of In silico designed 3-way junction nucleic acid motif for nanoparticles assembly

    No full text
    Organization of biological materials into specific two- and three-dimensional multifunctional scaffolds enabling to carry cell binding RNA aptamers, and therapeutic siRNA and miRNA for application in nanomedicine is a challenging task in the field of nucleic acid nanotechnology. In previous work, computer-assisted nucleic acid (NA) tetra-U/T three-way junction (3WJ) motif was designed to address questions related to assembly efficiency, versatility, stability, and immunotoxicity of various shape nanoparticles made of either RNA, or DNA, or 2’F-modified RNA strands and their hybrids. In this work we explore physicochemical properties of other 3WJ NA motif comprising 4T, 3T, 2T, 1T, and 0T links between helical stems and compare their utility as a building modules for triangular shape DNA nanoparticles. Assembly for these triangles have been verified using gel shift assays, the average hydrodynamic radius assessed by dynamic light scattering, the thermal stability determined by UV-melting experiments, and shape characterizations by AFM. We found that all DNA complexes assembled with high efficiency except the 0T construct. The overall dimension decreasing in the following order: 4T>3T>2T>1T from approximately 11nm to 7nm. The results from UV-melting experiment suggest that the most stable construct was the 0T structure and the least stable being the 4T-HP structure. This work is intended to demonstrate different design approaches of the triangular shaped Nucleic Acid complexes and highlight the importance of the thymidine linkages.Thesis (M.S.

    Unveiling Environmental Warfare: Carbon Capture, Racial Injustice, and Artistic Resistance

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    In this thesis, I utilize ethnographic fieldwork with environmental justice organizations, activists, politicians, scientists, and Black artists to uncover the intersection of historical environmental injustices and its current and future reproduction in green technology. Through multi-modal field sites within Washington DC, and rural and urban Louisiana, I show the ways in which environmental racism manifests itself as a war-like violence against African American communities, as well as the efforts of environmental justice ‘warriors’ against them. Exploring the historical continuities of racializing violence, I unveil parallels to tactics of exploitation within new green technologies such as carbon capture and storage (CCS). In the placement of these technologies being implemented in areas already burdened by industrial pollution, I illustrate the ways in which these initiatives can perpetuate systemic inequalities under the guise of environmental sustainability. Drawing on an intersectional ethnography that bridges anthropology, environmental studies, and African American studies, my anthropological work also explores the role of art which not only offers resistance and empowerment, but also an avenue for radical imagination. As such, this thesis calls for a radical change of environmental policies to discard past racial inequities that uphold oppressive structures, and a reimagination of our futures to prioritize social equity alongside environmental sustainability

    Head Start Families Thoughts and Beliefs about Health, Nutrition, and Physical Activity

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    In-depth interviews were conducted with a subset of Head Start families participating in an intervention comparison research study in a southwestern state.  Families were asked to share thoughts and beliefs about eating and physical activity habits.  Questions were asked in relation to consumption of healthy snacks, consumption of fruits and vegetables, influences on purchasing and eating habits, eating out patterns, physical activity, and perceptions of what it means to be healthy.  Both intervention and comparison families felt it was essential to consume fresh fruits and vegetables.  Economic reasons were cited by respondents as the main reason for not consuming fruits, vegetables, and healthy snacks regularly. While families from both the intervention and the control groups noted that their preschooler influenced their food purchases (about one-fourth of parents were always influenced), children from the intervention group began requesting healthy foods.  Families stated engaging in daily physical activity was important; however, barriers such as health restrictions, work schedules, weather, and personal preferences affected levels of physical activity.   Information from this study is guiding improvements to a preschool program targeting childhood obesity

    Repeated closed-head mild traumatic brain injury-induced inflammation is associated with nociceptive sensitization

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    Abstract Background Individuals who have experienced mild traumatic brain injuries (mTBIs) suffer from several comorbidities, including chronic pain. Despite extensive studies investigating the underlying mechanisms of mTBI-associated chronic pain, the role of inflammation in long-term pain after mTBIs is not fully elucidated. Given the shifting dynamics of inflammation, it is important to understand the spatial-longitudinal changes in inflammatory processes following mTBIs and their effects on TBI-related pain. Methods We utilized a recently developed transgenic caspase-1 luciferase reporter mouse model to monitor caspase-1 activation through a thinned skull window in the in vivo setting following three closed-head mTBI events. Organotypic coronal brain slice cultures and acutely dissociated dorsal root ganglion (DRG) cells provided tissue-relevant context of inflammation signal. Mechanical allodynia was assessed by mechanical withdrawal threshold to von Frey and thermal hyperalgesia withdrawal latency to radiant heat. Mouse grimace scale (MGS) was used to detect spontaneous or non-evoked pain. In some experiments, mice were prophylactically treated with MCC950, a potent small molecule inhibitor of NLRP3 inflammasome assembly to inhibit injury-induced inflammatory signaling. Bioluminescence spatiotemporal dynamics were quantified in the head and hind paws, and caspase-1 activation was confirmed by immunoblot. Immunofluorescence staining was used to monitor the progression of astrogliosis and microglial activation in ex vivo brain tissue following repetitive closed-head mTBIs. Results Mice with repetitive closed-head mTBIs exhibited significant increases of the bioluminescence signals within the brain and paws in vivo for at least one week after each injury. Consistently, immunoblotting and immunofluorescence experiments confirmed that mTBIs led to caspase-1 activation, astrogliosis, and microgliosis. Persistent changes in MGS and hind paw withdrawal thresholds, indicative of pain states, were observed post-injury in the same mTBI animals in vivo. We also observed enhanced inflammatory responses in ex vivo brain slice preparations and DRG for at least 3 days following mTBIs. In vivo treatment with MCC950 significantly reduced caspase-1 activation-associated bioluminescent signals in vivo and decreased stimulus-evoked and non-stimulus evoked nociception. Conclusions Our findings suggest that the inflammatory states in the brain and peripheral nervous system following repeated mTBIs are coincidental with the development of nociceptive sensitization, and that these events can be significantly reduced by inhibition of NLRP3 inflammasome activation
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