763 research outputs found

    AnĂĄlisis molecular de los cambios evolutivos en poblaciones de Ophiostoma novo-ulmi

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    The spread of Ophiostoma novo-ulmi across Europe, North America and central Asia, resulted in the current, highly destructive Dutch elm disease (DED) pandemic, replacing O. ulmi, responsible for the first DED pandemic in the early 1900s. This process has resulted in a series of remarkable evolutionary and adaptive developments. Studies of O. novo- ulmi populations in the 1980s, especially in Spain and Portugal, showed the following: 1) that O. novo-ulmi initially spread across Europe as a series of genetic clones; 2) that deleterious RNA viruses were transmitted within the O. novo-ulmi clones; 3) that natural hybrids between O. novo-ulmi subspecies americana and subsp. novo-ulmi, emerged widely across Europe; 4) that there has also been a widespread emergence, across Europe, of natural hybrids between O. novo-ulmi subspecies americana and also subsp. novo-ulmi. The factors driving these changes have been examined by molecular analysis. Results show: 1) that the rapid change from clonality to genetic variability involved the acquisition of ‘useful’ mating type, vegetative compatibility type and other genes by O. novo-ulmi from O. ulmi via lateral (or interspecies) gene transfer; whereas ‘unuseful’ O. ulmi genes were discarded; 2) that the RNA viruses occurring in the O. novo-ulmi populations probably originated from O. ulmi; and 3) and that where O. novo-ulmi subsp. americana and subsp. novo-ulmi co-exist, natural hybrids are occurring very freely; in some areas most O. novo-ulmi isolates are already complex subspp. americana x novo-ulmi hybrids. These phenomena features are unique, and have considerable implications for the invasion history, successful spread and future behaviour of O. novo-ulmi.La expansión de Ophiostoma novo-ulmi en Europa, Norteamérica y Asia central provocó la actual pandemia de grafiosis, altamente destructiva, y reemplazó a O. ulmi, responsable de la primera pandemia de grafiosis a principios del siglo XX. Este proceso ha provocado una serie de destacables desarrollos evolutivos y adaptativos. Los estudios realizados en la década de 1980 en poblaciones de O. novo-ulmi, especialmente en España y Portugal, mostraron lo siguiente: 1) que inicialmente O. novo-ulmi se expandió a través de Europa como una serie de clones genéticos; 2) que virus deletéreos de RNA se trsmitieron dentro de los clones de O. novo-ulmi; 3) que híbridos naturales entre las subespecies americana y novo-ulmi de O. novo-ulmi aparecieron en muchas zonas de Europa; 4) que en toda Europa está surgiendo un gran número de híbridos naturales entre las subespecies americana y novo-ulmi de O. novo-ulmi. Los factores conducentes a estos cambios han sido examinados mediante análisis molecular. Los resultados son: 1) que el rápido paso desde una situación de clonalidad a otra con gran variabilidad genética supuso la aparición de formas «utiles» para el apareamiento, formas con compatibilidad vegetativa, y otros genes de O. novo-ulmi por transferencia lateral (o interespecífica) a partir de O. ulmi; mientras que se descartó la presencia de genes «inútiles» de O. ulmi; 2) que los virus ARN presentes en las poblaciones de O. novo-ulmi se originaron probablemente a partir de O. ulmi; y 3) que en los lugares donde O. novo-ulmi subsp. americana y subsp. novo-ulmi coexisten, los híbridos naturales se generan libremente; en algunas áreas la mayor parte de los O. novo-ulmi aislados son en realidad complejos híbridos subsp. americana x subsp. novo-ulmi. Estas características son únicas, y tiene considerable implicaciones para la historia invasora, la exitosa dispersión y el futuro comportamiento de O. novo-ulmi

    Detecting ancient life : Investigating the nature and origin of possible stromatolites and associated calcite from a one billion year old lake

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    ATB acknowledges the hospitality of the North West Highlands Geopark in July 2017. DW acknowledges funding from the Australian Research Council via the Future Fellowship scheme (FT 140100321).Peer reviewedPostprin

    Observations of reservoir quality alteration in proximity to igneous intrusions for two distinct sandstones units in Scotland

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    Acknowledgements We thank the reviewers and editor for their helpful comments which greatly improved this manuscript. Thanks to John Still from the University of Aberdeen (ACEMAC ) for guidance with SEM/EDS, Colin Taylor for MICP tests and Walter Ritchie for making thin sections. Lorenza Sardisco and Jonathan Wilkins at X-Ray Minerals for XRD analysis and Prof. M.J. Wilson from the James Hutton Institute for valuable discussion of XRD results. Dave Healy acknowledges the support of the Natural Environment Research Council (NERC, UK) through the award NE/N003063/1 ‘Quantifying the Anisotropy of Permeability in Stressed Rock’.Peer reviewedPostprin

    Paleoecology and paleoceanography of the Athel silicilyte, Ediacaran-Cambrian boundary, Sultanate of Oman

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    The Athel silicilyte is an enigmatic, hundreds of meters thick, finely laminated quartz deposit, in which silica precipitated in deep water (>~100–200 m) at the Ediacaran–Cambrian boundary in the South Oman Salt Basin. In contrast, Meso-Neoproterozoic sinks for marine silica were dominantly restricted to peritidal settings. The silicilyte is known to contain sterane biomarkers for demosponges, which today are benthic, obligately aerobic organisms. However, the basin has previously been described as permanently sulfidic and time-equivalent shallow-water carbonate platform and evaporitic facies lack silica. The Athel silicilyte thus represents a unique and poorly understood depositional system with implications for late Ediacaran marine chemistry and paleoecology. To address these issues, we made petrographic observations, analyzed biomarkers in the solvent-extractable bitumen, and measured whole-rock iron speciation and oxygen and silicon isotopes. These data indicate that the silicilyte is a distinct rock type both in its sedimentology and geochemistry and in the original biology present as compared to other facies from the same time period in Oman. The depositional environment of the silicilyte, as compared to the bounding shales, appears to have been more reducing at depth in sediments and possibly bottom waters with a significantly different biological community contributing to the preserved biomarkers. We propose a conceptual model for this system in which deeper, nutrient-rich waters mixed with surface seawater via episodic mixing, which stimulated primary production. The silica nucleated on this organic matter and then sank to the seafloor, forming the silicilyte in a sediment-starved system. We propose that the silicilyte may represent a type of environment that existed elsewhere during the Neoproterozoic. These environments may have represented an important locus for silica removal from the oceans

    Residents\u27 Perceptions of Community and Environmental Impacts From Development of Natural Gas in the Marcellus Shale: A Comparison of Pennsylvania and New York Cases

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    Communities experiencing rapid growth due to energy development (‘boomtowns’) have reported positive and negative impacts on community and individual well-being. The perceptions of impacts vary according to stage of energy development as well as experience with extractive industries. Development of the Marcellus Shale provides an opportunity to examine these impacts over time and across geographic and historical contexts. This paper describes case study research in Pennsylvania and New York to document preliminary impacts of development occurring there. Cases vary by level of development and previous extractive history. The study finds that, in areas with low population density, higher levels of development lead to a broader awareness of natural gas impacts, both positive and negative. Participants draw from the regional history of extraction to express environmental concern despite direct, local experience. Our findings suggest the need to track these perceptions during development, and as individuals and communities react and adapt to the impacts

    8-Oxoguanine DNA glycosylase-1-mediated DNA repair is associated with Rho GTPase activation and α-smooth muscle actin polymerization

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    Reactive oxygen species (ROS) are activators of cell signaling and modify cellular molecules, including DNA. 8-Oxo-7,8-dihydroguanine (8-oxoG) is one of the prominent lesions in oxidatively damaged DNA, whose accumulation is causally linked to various diseases and aging processes, whereas its etiological relevance is unclear. 8-OxoG is repaired by the 8-oxoguanine DNA glycosylase-1 (OGG1)-initiated DNA base excision repair (BER) pathway. OGG1 binds free 8-oxoG and this complex functions as an activator of Ras family GTPases. Here we examined whether OGG1-initiated BER is associated with the activation of Rho GTPase and mediates changes in the cytoskeleton. To test this possibility, we induced OGG1- initiated BER in cultured cells and mouse lungs and used molecular approaches such as active Rho pull- down assays, siRNA ablation of gene expression, immune blotting, and microscopic imaging. We found that OGG1 physically interacts with Rho GTPase and, in the presence of 8-oxoG base, increases Rho–GTP levels in cultured cells and lungs, which mediates α-smooth muscle actin (α-SMA) polymerization into stress ïŹbers and increases the level of α-SMA in insoluble cellular/tissue fractions. These changes were absent in cells lacking OGG1. These unexpected data and those showing that 8-oxoG repair is a lifetime process suggest that, via Rho GTPase, OGG1 could be involved in the cytoskeletal changes and organ remodeling observed in various chronic diseases

    Response of Quercus ilex seedlings to Phytophthora spp. root infection in a soil infestation test

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    [EN] Phytophthora species are the main agents associated with oak (Quercus spp.) decline, together with the changing environmental conditions and the intensive land use. The aim of this study was to evaluate the susceptibility of Quercus ilex to the inoculation with eight Phytophthora species. Seven to eight month old Q. ilex seedlings grown from acorns, obtained from two Spanish origins, were inoculated with P. cinnamomi, P. cryptogea, P. gonapodyides, P. megasperma, P. nicotianae, P. plurivora, P. psychrophila and P. quercina. All Phytophthora inoculated seedlings showed decline and symptoms including small dark necrotic root lesions, root cankers, and loss of fine roots and tap root. The most aggressive species were P. cinnamomi, P. cryptogea, P. gonapodyides, P. plurivora and P. psychrophila followed by P. megasperma., while Phytophthora quercina and P. nicotianae were the less aggressive species. Results obtained confirm that these Phytophthora species could constituted a threat to Q. ilex ecosystems and the implications are further discussed.The authors are grateful to A. Solla and his team from the Centro Universitario de Plasencia-Universidad de Extremadura (Spain) for helping in the acorns collection and to the CIEF (Centro para la InvestigaciĂłn y ExperimentaciĂłn Forestal, Generalitat Valenciana, Valencia, Spain) for providing the acorns. This research was supported by funding from the project AGL2011- 30438-C02-01 (Ministerio de EconomĂ­a y Competitividad, Spain).Mora-Sala, B.; Abad Campos, P.; Berbegal Martinez, M. (2018). Response of Quercus ilex seedlings to Phytophthora spp. root infection in a soil infestation test. European Journal of Plant Pathology. https://doi.org/10.1007/s10658-018-01650-6SÁlvarez, L. A., PĂ©rez-Sierra, A., Armengol, J., & GarcĂ­a-JimĂ©nez, J. (2007). 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