Low-Molecular-Weight Protein Tyrosine Phosphatases of Bacillus subtilis

In gram-negative organisms, enzymes belonging to the low-molecular-weight protein tyrosine phosphatase (LMPTP) family are involved in the regulation of important physiological functions, including stress resistance and synthesis of the polysaccharide capsule. LMPTPs have been identified also in gram-positive bacteria, but their functions in these organisms are presently unknown. We cloned two putative LMPTPs from Bacillus subtilis, YfkJ and YwlE, which are highly similar to each other in primary structure as well as to LMPTPs from gram-negative bacteria. When purified from overexpressing Escherichia coli strains, both enzymes were able to dephosphorylate p-nitrophenyl-phosphate and phosphotyrosine-containing substrates in vitro but showed significant differences in kinetic parameters and sensitivity to inhibitors. Transcriptional analyses showed that yfkJ was transcribed at a low level throughout the growth cycle and underwent a σB-dependent transcriptional upregulation in response to ethanol stress. The transcription of ywlE was growth dependent but stress insensitive. Genomic deletion of each phosphatase-encoding gene led to a phenotype of reduced bacterial resistance to ethanol stress, which was more marked in the ywlE deletion strain. Our study suggests that YfkJ and YwlE play roles in B. subtilis stress resistance

Transvenous removal of pacing and implantable cardiac defibrillating leads using single sheath mechanical dilatation and multiple venous approaches: high success rate and safety in more than 2000 leads

Abstract: The aim of the present study was to describe a 10 years single-centre experience in pacing and defibrillating leads removal using an effective and safe modified mechanical dilatation technique. We developed a single mechanical dilating sheath extraction technique with multiple venous entry site approaches. We performed a venous entry site approach (VEA) in cases of exposed leads and an alternative transvenous femoral approach (TFA) combined with an internal transjugular approach (ITA) in the presence of very tight binding sites causing failure of VEA extraction or in cases of free-floating leads. We attempted to remove 2062 leads [1825 pacing and 237 implantable cardiac defibrillating (ICD) leads; 1989 exposed at the venous entry site and 73 free-floating] in 1193 consecutive patients. The VEA was effective in 1799 leads, the TFA in 28, and the ITA in 205; in the overall population, we completely removed 2032 leads (98.4%), partially removed 18 (0.9%), and failed to remove 12 leads (0.6%). Major complications were observed in eight patients (0.7%), causing three deaths (0.3%). Mechanical single sheath extraction technique with multiple venous entry site approaches is effective, safe, and with a good cost effective profile for pacing and ICD leads removal

Sunscreens Cause Coral Bleaching by Promoting Viral Infections

Background: Coral bleaching (i.e., the release of coral symbiotic zooxanthellae) has negative impacts on biodiversity and functioning of reef ecosystems and their production of goods and services. This increasing world-wide phenomenon is associated with temperature anomalies, high irradiance, pollution, and bacterial diseases. Recently, it has been demonstrated that personal can products, including sunscreens, have an impact on aquatic organisms similar to that of other contaminants. Objectives: Our goal was to evaluate the potential impact of sunscreen ingredients on hard corals and their symbiotic algae. Methods: In situ and laboratory experiments were conducted in several tropical regions (the Atlantic, Indian, and Pacific Oceans, and the Red Sea) by supplementing coral branches with aliquots of sunscreens and common ultraviolet filters contained in sunscreen formula. Zooxanthellae were checked for viral infection by epifluorescence and transmission electron microscopy analyses. Results: Sunscreens cause the rapid and complete bleaching of hard corals, even at extremely low concentrations. The effect of sunscreens is due to organic ultraviolet filters, which are able to induce the lyric viral cycle in symbiotic zooxanthellae with latent infections. Conclusions: We conclude that sunscreens, by promoting viral infection, potentially play an important role in coral bleaching in areas prone to high levels of recreational use by humans

Cardiac resynchronization therapy after coronary sinus lead extraction: feasibility and mid-term outcome of transvenous reimplantation in a tertiary referral centre

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Modelling distribution and fate of coralligenous habitat in the Northern Adriatic Sea under a severe climate change scenario

Due to their well-acknowledged capability in predicting habitat distributions, Habitat Suitability Models (HSMs) are particularly useful for investigating ecological patterns variations under climate change scenarios. The shallow coastal regions of the Northern Adriatic Sea, a sub-basin of the Mediterranean Sea, are studded with coralligenous outcrops recognized as important biodiversity hotspots exposed to the effects of climate change. In this research, we investigate the distributions of the Northern Adriatic Sea coralligenous habitats characterized by diverse species assemblages differently influenced by environmental factors, and provide a projection of how these might be impacted by climate change. Two models (Random Forest and MaxEnt), populated with occurrence data gathered from previous publications, environmental parameters’ from online databases (CMEMS, Bio-Oracle), and a set of dedicated ocean model simulations, are applied in recent past conditions and under a future severe climate change scenario (RCP 8.5). The model performance metrics confirm the ability of both approaches for predicting habitat distribution and their relationship with environmental conditions. The results show that salinity, temperature, and nitrate concentration are generally the most relevant variables in affecting the coralligenous outcrops distribution. The environmental variations projected under climate change conditions are expected to favour the spreading of opportunistic organisms, more tolerant to stressful conditions, at the expense of more vulnerable species. This will result in a shift in the distribution of these habitats, with a consequent potential loss of biodiversity in the Northern Adriatic Sea

Are we overlooking Natura 2000 sites? Lessons learned from a transnational project in the Adriatic Sea

Since the adoption of the Habitats and Birds Directives by EU governments, marine Natura 2000 (N2K) sites have been established in the European Mediterranean Sea, creating one of the largest international networks of protected areas. Nevertheless, to date, marine N2K sites are generally scarcely implemented, studied and monitored, and thus their management effectiveness is weak, and their environmental status is often unknown. The Interreg Italy-Croatia ECOSS project aimed at establishing the ECOlogical observing system of the Adriatic Sea (ECOAdS), to integrate the existing research and monitoring activities in the area, and to promote data sharing at international level, for enhancing monitoring and conservation in Adriatic N2K network. In the framework of ECOSS, a conceptual model was developed and applied to selected N2K sites, to review the existing knowledge, assess site effectiveness, and suggest possible improvements in their monitoring and management based on the contribution that ECOAdS can provide to their implementation. Information on social, ecological, and oceanographic elements related to the conservation and management of these case studies was gathered by consulting the project partners involved in the management and monitoring of the sites and through a literature review. The results of this study revealed a discouraging condition with no management plan in most of the sites, while regulatory measures are generally in place but without surveillance. Monitoring activities are performed occasionally, and information on presence and status of protected species is often lacking or outdated. Although the N2K network provides a unique opportunity to advance marine conservation and achieve the 30% conservation target by 2030, the biggest challenge ahead is the proper management and monitoring of N2K sites. The proposed conceptual model may be taken as a framework to properly set up ecological observing systems in the N2K network and help overcome current limitations, integrating scientific research within the N2K conservation strategies

How much biodiversity is concealed in the word ‘biodiversity’?

Non peer reviewe

Framing Cutting-Edge Integrative Deep-Sea Biodiversity Monitoring via Environmental DNA and Optoacoustic Augmented Infrastructures

17 pages, 1 figure, 1 tableDeep-sea ecosystems are reservoirs of biodiversity that are largely unexplored, but their exploration and biodiscovery are becoming a reality thanks to biotechnological advances (e.g., omics technologies) and their integration in an expanding network of marine infrastructures for the exploration of the seas, such as cabled observatories. While still in its infancy, the application of environmental DNA (eDNA) metabarcoding approaches is revolutionizing marine biodiversity monitoring capability. Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity. Here, we describe the potential for acquiring eDNA as a core component for the expanding ecological monitoring capabilities through cabled observatories and their docked Internet Operated Vehicles (IOVs), such as crawlers. Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging; (ii) Development of eDNA repositories and cross-linking with other biodiversity databases; (iii) Artificial Intelligence for eDNA analyses and integration with imaging data; and (iv) Benefits of eDNA augmented observatories for the conservation and sustainable management of deep-sea biodiversity. Finally, we discuss the technical limitations and recommendations for future eDNA monitoring of the deep-sea. It is hoped that this review will frame the future direction of an exciting journey of biodiscovery in remote and yet vulnerable areas of our planet, with the overall aim to understand deep-sea biodiversity and hence manage and protect vital marine resourcesThis research has been funded within the framework of the following project activities: ARIM (Autonomous Robotic Sea-Floor Infrastructure for Benthopelagic Monitoring; MarTERA ERA-Net Cofound); RESBIO (TEC2017-87861-R; Ministerio de Ciencia, Innovación y Universidades); JERICO-S3: (Horizon 2020; Grant Agreement no. 871153); ENDURUNS (Research Grant Agreement H2020-MG-2018-2019-2020 n.824348); Slovenian Research Agency (Research Core Funding Nos. P1-0237 and P1-0255 and project ARRS-RPROJ-JR-J1-3015). We also profited of the funding from the Spanish Government through the “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S) and Italian Ministry of Education (MIUR) under the “Bando premiale FOE 2015” (nota prot. N. 850, dd. 27 ottobre 2017) with the project EarthCruisers “EARTH’s CRUst Imagery for Investigating Seismicity, Volcanism, and Marine Natural Resources in the Sicilian Offshore”. Ocean Networks Canada was funded through Canada Foundation for Innovation-Major Science Initiative (CFI-MSI) fund 30199Peer reviewe

Framing Cutting-Edge Integrative Deep-Sea Biodiversity Monitoring via Environmental DNA and Optoacoustic Augmented Infrastructures

Deep-sea ecosystems are reservoirs of biodiversity that are largely unexplored, but their exploration and biodiscovery are becoming a reality thanks to biotechnological advances (e.g., omics technologies) and their integration in an expanding network of marine infrastructures for the exploration of the seas, such as cabled observatories. While still in its infancy, the application of environmental DNA (eDNA) metabarcoding approaches is revolutionizing marine biodiversity monitoring capability. Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity. Here, we describe the potential for acquiring eDNA as a core component for the expanding ecological monitoring capabilities through cabled observatories and their docked Internet Operated Vehicles (IOVs), such as crawlers. Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging ; (ii) Development of eDNA repositories and cross-linking with other biodiversity databases ; (iii) Artificial Intelligence for eDNA analyses and integration with imaging data ; and (iv) Benefits of eDNA augmented observatories for the conservation and sustainable management of deep-sea biodiversity. Finally, we discuss the technical limitations and recommendations for future eDNA monitoring of the deep-sea. It is hoped that this review will frame the future direction of an exciting journey of biodiscovery in remote and yet vulnerable areas of our planet, with the overall aim to understand deep-sea biodiversity and hence manage and protect vital marine resources

Los Traustoquítridos (portistas fungoides), un componente inexplorado de la microbiota de los sedimentos marinos

Thraustochytrids are poorly known fungoid protists able to decompose refractory organic substrates such as cellulose. These microorganisms probably play an important role in the microbial loop of marine sediments. This paper reports a study conducted on thraustochytrids dwelling in a sandy shore of the Eastern Ligurian Sea. One hundred twenty eight samples (1 ml each) were collected, to examine Thraustochytrid spatial distribution, following a nested ANOVA design, that incorporated 3 successively smaller spatial scales (different sampling units ranging from metres to centimetres). Samples were examined by a direct, improved, fluorochrome-count method also suitable for ciliates. Sampling was repeated 4 times in autumn-winter. The average abundance of thraustochytrids (±SE) was 42.3±2.9 ml-1, with no significant decrease over time. The densities of thraustochytrids and ciliates varied significantly but at different spatial scales: the former between squares (3.3 x 3.3 m), and the latter between subplots (0.01 x 0.01m), indicating their tendency to form patches at different spatial scales. A significant correlation was found between the densities of the two protists, suggesting some interaction between them could occur. The thraustochytrid abundance supports the idea that these protists play a an important role in carbon cycling of Mediterranean sandy shores.Los Traustoquítridos son protistas fungoides poco conocidos, capaces de descomponer sustratos orgánicos refractarios como la celulosa. Dichos microorganismos desempeñan probablemente un importante papel en el bucle microbiano de los sedimentos marinos. Este trabajo informa de un estudio realizado sobre traustoquítridos de una playa arenosa del mar Ligur oriental. Se recolectaron 128 muestras de 1 ml, con el fin de estudiar su distribución espacial, siguiendo un diseño ANOVA, que incluía 3 escalas espaciales de tamaño decreciente (unidades de muestreo diferentes, que iban de metros a centímetros). Las muestras se examinaron mediante un método directo y mejorado de recuento mediante fluorocromo, que también es adecuado para ciliados. El muestreo se repitió 4 veces en otoño-invierno. La abundancia media de traustoquítridos y ciliados varió de manera significativa pero a escalas espaciales distintas: aquellos entre cuadrados (3.3 x 3.3 m), y éstos entre submuestras (0.01 x 0.01m), lo que indica su tendencia a formar manchas a distintas escalas espaciales. Se encontró una correlación significativa entre las densidades de los dos tipos de protistas, lo que sugiere que debe existir alguna interacción entre ellos. La abundancia de traustoquítridos refuerza la idea de que estos protistas desempeñan un importante papel en el ciclado del carbono de las playas arenosas del Mediterráne