Elisa Berdalet

Supllement Women in Oceanography: A Decade Later.-- 1 pagePeer Reviewe

Respiration predicted from an Enzyme Kinetic Model and the Metabolic Theory of Ecology in two species of marine bacteria

12 pages, 8 figures, 5 tablesRespiratory oxygen consumption is the result of a cell's biochemistry. It is caused by enzymatic activity of the respiratory electron transfer system (ETS). However, in spite of this understanding, respiration models continue to be based on allometric equations relating respiration to body size, body surface, or biomass. The Metabolic Theory of Ecology (MTE) is a current example. It is based on Kleiber's law relating respiration (R) and biomass (M) in the form, View the MathML source, where C is a constant, Ea is the Arrhenius activation energy, k is the Boltzmann constant for an atom or molecule, and T is the temperature in Kelvin. This law holds because biomass packages the ETS. In contrast, we bypass biomass and model respiration directly from its causal relationship with the ETS activity, R = f (ETS). We use a biochemical Enzyme Kinetic Model (EKM) of respiratory oxygen consumption based on the substrate control of the ETS. It postulates that the upper limit of R is set by the maximum velocity, Vmax, of complex I of the ETS and the temperature, and that the substrate availability, S, modulates R between zero and this upper limit. Kinetics of this thermal-substrate regulation is described by the Arrhenius and Michaelis–Menten equations. The EKM equation takes the form View the MathML source where Rg is the molar gas constant and K is the Michaelis–Menten constant. Here, we apply the EKM and the MTE to predict a respiration time-profile throughout the exponential, steady state, and nutrient-limited phases of the marine bacteria Pseudomonas nautica and Vibrio natriegens in acetate-based cultures. Both models were tested by comparing their output with the measured RO2 time-profile. The MTE predicted respiration accurately only in the exponential growth phase, but not during the nutrient limitation part of the stationary phase. In contrast, the EKM worked well throughout both physiological phases as long as the modeled substrates fall with the declining carbon source. Results support the theoretical bases of the EKM. We conclude that the EKM holds promise for predicting respiration at the different physiological states and time-scales important to microbiological studiesFinancial support was provided by the Universidad de Las Palmas de Gran Canaria (ULPGC), the Spanish Ministry of Education and Science, the Graduate Program in Oceanography at the ULPGC, ICM-CSIC, and the research grants MODIVUS (CTM2005-04795/MAR), EXOME (CTM 2008-01616), and OITHONA (CTM2007-60052). T. Packard was supported by contract EXMAR SE-539 10/17 (Proyecto Estructurante en Ciencias Marinas). This is contribution #200906 from the Bigelow Laboratory for Ocean SciencesPeer reviewe

Effects of inorganic nitrogen (NH4Cl) and biodegradable organic carbon (CH3COONa) additions on a pilot-scale seawater biofilter

Biofilters degrade only a small fraction of the natural organic matter (NOM) contained in seawater which is the leading cause of biofouling in downstream processes. This work studies the effects of chemical additions on NOM biodegradation by biofilters. In this work, biofiltration of seawater with an empty bed contact time (EBCT) of 6 min and a hydraulic loading rate of 10 m h-1 reduces the biological oxygen demand (BOD7) by 8%, the dissolved organic carbon (DOC) by 6% and the UV absorbance at 254 nm (A254) by 7%. Different amounts of ammonium chloride are added to the seawater (up to twice the total dissolved nitrogen in untreated seawater) to study its possible effect on the removal of NOM by a pilot-scale biofilter. Seawater is amended with different amounts of easily biodegradable dissolved organic carbon (BDOC) supplied as sodium acetate (up to twice the DOC) for the same purpose. The results of this work reveal that the ammonium chloride additions do not significantly affect NOM removal and the sodium acetate is completely consumed by the biofiltration process. For both types of chemical additions, the BOD7, DOC and A254 in the outlet stream of the biofilter are similar to the values for the untreated control. These results indicate that this biofilter easily removes the BDOC from the seawater when the EBCT is not above 6 min. Furthermore, nitrogen does not limit the NOM biodegradation in seawater under these experimental conditions

Intercalibration of four spectrofluorometric protocols for measuring RNA/DNA ratios in larval and juvenile fish

The ratio of tissue RNA to DNA (R/D) is a widely used index of recent growth and nutritional condition in larval and juvenile fish. To date, however, no standard technique for measuring nucleic acids has been adopted. Because methodological details can affect the estimate of R/D, researchers using different analytical protocols have been unable to compare ratios directly. Here, we report on the results of an international interlaboratory calibration of 4 spectrofluorometric protocols to quantify nucleic acids. Replicate sets of 5 tissue samples and 2 standards (common standards) were supplied to each of 5 researchers for analysis with their own methods and standards. Two approaches were evaluated for mitigating the observed differences in values: 1) the use of common nucleic acid standards and 2) standardizing to a common slope ratio (slope of DNA standard curve/slope of RNA standard curve or mDNA/mRNA). Adopting common standards slightly reduced the variability among protocols but did not overcome the problem. When tissue R/Ds were standardized based on a common mDNA/mRNA slope ratio, the variance attributed to analytical protocol decreased dramatically from 57.1% to 3.4%. We recommend that the ratio of the slopes of the standard curves be provided to facilitate intercomparability of R/D results among laboratories using different spectrofluorometric methods for the analysis of nucleic acids in fish

Toxic microalgae and global change : why have proliferations increased along the Mediterranean coast?

The ocean and the continent converge in a very narrow line that is, nonetheless, truly relevant to the health, leisure, and economy of our society. The Mediterranean coastline has undergone major changes over the last fifty years, which is evident in the alteration of its microalgae species. The proliferation of dinoflagellates is now common in microscopic organism communities in this ecosystem as a result of the modifications caused by humans and climate change. The increased frequency with which toxic microalgae blooms are detected has been key to raising awareness of this change

Marine harmful algal blooms, human health and wellbeing : challenges and opportunities in the 21st century

Author Posting. © Marine Biological Association of the United Kingdom, 2015. This is the author's version of the work. It is posted here by permission of Marine Biological Association of the United Kingdom for personal use, not for redistribution. The definitive version was published in Journal of the Marine Biological Association of the United Kingdom 96 (2016): 61-91, doi:10.1017/S0025315415001733.Microalgal blooms are a natural part of the seasonal cycle of photosynthetic organisms in marine ecosystems. They are key components of the structure and dynamics of the oceans and thus sustain the benefits that humans obtain from these aquatic environments. However, some microalgal blooms can cause harm to humans and other organisms. These harmful algal blooms (HABs) have direct impacts on human health and negative influences on human wellbeing, mainly through their consequences to coastal ecosystem services (valued fisheries, tourism and recreation) and other marine organisms and environments. HABs are natural phenomena, but these events can be favoured by anthropogenic pressures in coastal areas. Global warming and associated changes in the oceans could affect HAB occurrences and toxicity as well, although forecasting the possible trends is still speculative and requires intensive multidisciplinary research. At the beginning of the 21st century, with expanding human populations, particularly in coastal and developing countries, there is an urgent need to prevent and mitigate HABs’ impacts on human health and wellbeing. The available tools to address this global challenge include maintaining intensive, multidisciplinary and collaborative scientific research, and strengthening the coordination with stakeholders, policymakers and the general public. Here we provide an overview of different aspects to understand the relevance of the HABs phenomena, an important element of the intrinsic links between oceans and human health and wellbeing.The research was funded in part by the UK Medical Research Council (MRC) and UK Natural Environment Research Council (NERC) for the MEDMI Project; the National Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Environmental Change and Health at the London School of Hygiene and Tropical Medicine in partnership with Public Health England (PHE), and in collaboration with the University of Exeter, University College London and the Met Office; and the European Regional Development Fund Programme and European Social Fund Convergence Programme for Cornwall and the Isles of Scilly (University of Exeter Medical School). EB was supported by the CTM2014-53818-R project, from the Spanish Government (MINECO). KDA was in receipt of funding from the BBSRC-NERC research programme for multidisciplinary studies in sustainable aquaculture: health, disease and the environment. P. Hess was supported by Ifremer (RISALTOX) and the Regional Council of the Pays de la Loire (COSELMAR). Porter Hoagland was supported by the US National Science Foundation under NSF/CNH grant no. 1009106.2016-05-2

SCOR-IOC Global Ecology and Oceanography of Harmful Algal Blooms (GEOHAB) Program: Progress Report 2013-2015

Presentación para la reunión del Intergovernmental Panel on Harmful Algal Bloom coordinado por Global Ecology and Oceanography of Harmful Algal Blooms (GEOHAB).-- 26 pagesPeer Reviewe

Cell cycle and cell mortality of Alexandrium minutum (Dinophyceae) under small-scale turbulence conditions

Decreased net population growth rates and cellular abundances have been observed in dinoflagellate species exposed to small-scale turbulence. Here, we investigated whether these effects were caused by alterations in the cell cycle and/or by cell mortality and, in turn, whether these two mechanisms depended on the duration of exposure to turbulence. The study was conducted on the toxic dinoflagellate Alexandrium minutum Halim, with the same experimental design and setup used in previous studies to allow direct comparison among results. A combination of microscopy and Coulter Counter measurements allowed us to detect cell mortality, based on the biovolume of broken cells and thecae. The turbulence applied during the exponential growth phase caused an immediate transitory arrest in the G2/M phase, but significant mortality did not occur. This finding suggests that high intensities of small-scale turbulence can alter the cell division, likely affecting the correct chromosome segregation during the dinomitosis. When shaking persisted for >4 d, mortality signals and presence of anomalously swollen cells appeared, hinting at the activation of mechanisms that induce programmed cell death. Our study suggests that the sensitivity of dinoflagellates to turbulence may drive these organisms to find the most favorable (calm) conditions to complete their division cycle.Postprin

New methodological approach to estimate the turbulent kinetic energy dissipation rate

The length scale and the spatio-temporal variation of turbulence intensity has relevant implications on phytoplankton dynamics. Thus, it is important to estimate the relevant parameters that characterize the turbulence in the water column, such as epsilon (kinetic energy dissipation rates). One of the main objectives in this work is the characterization of the physical dynamics at scales relevant to the biology. Here we show different approaches to estimate the epsilon in the Alfacs Bay (Ebre Delta), where recurrent harmful algal bloom events occur. First, we applied the solid boundary layer theory wind velocities obtained by a nearby meteorological station. Secondly, the gradient temperature microstructure method, based on the Batchelor spectrum adjustment was applied on temperature data obtained by a Self-Contained Autonomous MicroProfiler (SCAMP). These two approaches have methodological restrictions, i.e. isotropic turbulent or the process applied to do the Batchelor spectrum fitting. A new method to characterize the turbulence is proposed. The velocity fields measured by a deployed high resolution 2 MHz acoustic Doppler current profiler were processed using the Reynolds decomposition to obtain an empirical parameter which provides us the information about the turbulent kinetic energy in the water column.Peer Reviewe