A probabilistic model for crystal growth applied to protein deposition at the microscale

A probabilistic discrete model for 2D protein crystal growth is presented. This model takes into account the available space and can describe growing processes of different nature due to the versatility of its parameters which gives the model great flexibility. The accuracy of the simulation is tested against a real protein (SbpA) crystallization experiment showing high agreement between the proposed model and the actual images of the nucleation process. Finally, it is also discussed how the regularity of the interface (i.e. the curve that separates the crystal from the substrate) affects to the evolution of the simulation.Comment: 13 pages, 12 figure

The ALHAMBRA photometric system

This paper presents the characterization of the optical range of the ALHAMBRA photometric system, a 20 contiguous, equal-width, medium-band CCD system with wavelength coverage from 3500A to 9700A. The photometric description of the system is done by presenting the full response curve as a product of the filters, CCD and atmospheric transmission curves, and using some first and second order moments of this response function. We also introduce the set of standard stars that defines the system, formed by 31 classic spectrophotometric standard stars which have been used in the calibration of other known photometric systems, and 288 stars, flux calibrated homogeneously, from the Next Generation Spectral Library (NGSL). Based on the NGSL, we determine the transformation equations between Sloan Digital Sky Survey (SDSS) ugriz photometry and the ALHAMBRA photometric system, in order to establish some relations between both systems. Finally we develop and discuss a strategy to calculate the photometric zero points of the different pointings in the ALHAMBRA project.Comment: Astronomical Journal on the 14th of January 201

Mechanically bonded macromolecules

Mechanically bonded macromolecules constitute a class of challenging synthetic targets in polymer science. The controllable intramolecular motions of mechanical bonds, in combination with the processability and useful physical and mechanical properties of macromolecules, ultimately ensure their potential for applications in materials science, nanotechnology and medicine. This tutorial review describes the syntheses and properties of a library of diverse mechanically bonded macromolecules, which covers (i) main-chain, side-chain, bridged, and pendant oligo/polycatenanes, (ii) main-chain oligo/polyrotaxanes, (iii) poly[c2]daisy chains, and finally (iv) mechanically interlocked dendrimers. A variety of highly efficient synthetic protocols—including template-directed assembly, step-growth polymerisation, quantitative conjugation, etc.—were employed in the construction of these mechanically interlocked architectures. Some of these structures, i.e., side-chain polycatenanes and poly[c2]daisy chains, undergo controllable molecular switching in a manner similar to their small molecular counterparts. The challenges posed by the syntheses of polycatenanes and polyrotaxanes with high molecular weights are contemplated

Fuzzy Networked Control Systems Design Considering Scheduling Restrictions

Nowadays network control systems present a common approximation when connectivity is the issue to be solved based on time delays coupling from external factors. However, this approach tends to be complex in terms of time delays. Therefore, it is necessary to study the behavior of the delays as well as the integration into differential equations of these bounded delays. The related time delays needs to be known a priory but from a dynamic real-time behavior. To do so, the use of priority dynamic Priority exchange scheduling is performed. The objective of this paper is to show a way to tackle multiple time delays that are bounded and the dynamic response from real-time scheduling approximation. The related control law is designed considering fuzzy logic approximation for nonlinear time delays coupling, where the main advantage is the integration of this behavior through extended state space representation keeping certain linear and bounded behavior and leading to a stable situation during events presentation by guaranteeing stability through Lyapunov

Nodal involvement evaluation in advanced cervical cancer: a single institutional experience

Purpose: To assess the usefulness of different imaging techniques in the detection of nodal involvement in patients with advanced cervical carcinoma. Moreover, to analyze the correlation between the presurgical (FIGO) and postsurgical (pTNM) staging classifications. Materials and Methods: All patients diagnosed with advanced cervical cancer (FIGO Stages IIB-IV) from 2005 to 2012 were selected. The medical charts of 51 patients that underwent presurgical assessment with posterior surgical staging by means of paraaortic lymphadenectomy, were reviewed. Nodal status assessment by computed tomography scan (CT scan), magnetic resonance imaging (MRI), positron emission tomography (PET), and sonography was compared, as well as the size given in imaging techniques compared to the final pathologic report information. Results: Presurgical analysis by CT scan, MRI, PET, and sonography showed pelvic nodal involvement in 51.3% of patients, and para-aortic involvement in 30.8% of cases. CT scan showed positive pelvic nodes in 35% of cases, but pathologic confirmation was observed in just 17.6% of cases. However, MRI resulted in higher rates of up to 48.8% of cases. Concerning para-aortic nodal involvement, CT scan showed positive nodes in 25% of cases, MRI in 3.2% of cases, and the pathologic report in 15.6% of cases. The authors found significant differences between staging groups among both classifications (FIGO vs. pTNM; p < 0.001). Eight cases (15.7%) were understaged by FIGO classification. Conclusions: Despite all imaging techniques available, none has demonstrated to be efficient enough to avoid the systematic study of para-aortic nodal status by means of surgical evaluatio

Spin precession and spin Hall effect in monolayer graphene/Pt nanostructures

Spin Hall effects have surged as promising phenomena for spin logics operations without ferromagnets. However, the magnitude of the detected electric signals at room temperature in metallic systems has been so far underwhelming. Here, we demonstrate a two-order of magnitude enhancement of the signal in monolayer graphene/Pt devices when compared to their fully metallic counterparts. The enhancement stems in part from efficient spin injection and the large resistivity of graphene but we also observe 100% spin absorption in Pt and find an unusually large effective spin Hall angle of up to 0.15. The large spin-to-charge conversion allows us to characterise spin precession in graphene under the presence of a magnetic field. Furthermore, by developing an analytical model based on the 1D diffusive spin-transport, we demonstrate that the effective spin-relaxation time in graphene can be accurately determined using the (inverse) spin Hall effect as a means of detection. This is a necessary step to gather full understanding of the consequences of spin absorption in spin Hall devices, which is known to suppress effective spin lifetimes in both metallic and graphene systems.Comment: 14 pages, 6 figures. Accepted in 2D Materials. https://doi.org/10.1088/2053-1583/aa882

The ALHAMBRA Project: A large area multi medium-band optical and NIR photometric survey

(ABRIDGED) We describe the first results of the ALHAMBRA survey which provides cosmic tomography of the evolution of the contents of the Universe over most of Cosmic history. Our approach employs 20 contiguous, equal-width, medium-band filters covering from 3500 to 9700 A, plus the JHKs bands, to observe an area of 4 sqdeg on the sky. The optical photometric system has been designed to maximize the number of objects with accurate classification by SED and redshift, and to be sensitive to relatively faint emission lines. The observations are being carried out with the Calar Alto 3.5m telescope using the cameras LAICA and O-2000. The first data confirm that we are reaching the expected magnitude limits of AB<~25 mag in the optical filters from the blue to 8300 A, and from AB=24.7 to 23.4 for the redder ones. The limit in the NIR is (Vega) K_s~20, H~21, J~22. We expect to obtain accurate redshift values, Delta z/(1+z) <~ 0.03 for about 5x10^5 galaxies with I<~25 (60% complete), and z_med=0.74. This accuracy, together with the homogeneity of the selection function, will allow for the study of the redshift evolution of the large scale structure, the galaxy population and its evolution with redshift, the identification of clusters of galaxies, and many other studies, without the need for any further follow-up. It will also provide targets for detailed studies with 10m-class telescopes. Given its area, spectral coverage and its depth, apart from those main goals, the ALHAMBRA-Survey will also produce valuable data for galactic studies.Comment: Accepted to the Astronomical Journal. 43 pages, 18 figures. The images have been reduced in resolution to adapt to standard file sizes. Readers can find the full-resolution version of the paper at the ALHAMBRA web site (http://www.iaa.es/alhambra) under the "Publications" lin

Rigidity−Stability Relationship in Interlocked Model Complexes Containing Phenylene-Ethynylene-Based Disubstituted Naphthalene and Benzene

Structural rigidity has been found to be advantageous for molecules if they are to find applications in functioning molecular devices. In the search for an understanding of the relationship between the rigidity and complex stability in mechanically interlocked compounds, the binding abilities of two π-electron-rich model compounds (2 and 4), where rigidity is introduced in the form of phenylacetylene units, toward the π-electron deficient tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT^(4+)), were investigated. 1,4-Bis(2-(2-methoxyethoxy)ethoxy)-2,5-bis(2-phenylethynyl)benzene 2 and 1,5-bis(2-(2-methoxyethoxy)ethoxy)- 2,6-bis(2-phenylethynyl)naphthalene 4 were synthesized, respectively, from the appropriate precursor dibromides 1 and 3 of benzene and naphthalene carrying two methoxyethoxyethoxy side chains. The rigid nature of the compounds 2 and 4 is reflected in the reduced stabilities of their 1:1 complexes with CBPQT^(4+). Binding constants for both 2 (100 M^(-1)) and 4 (140 M^(-1)) toward CBPQT^(4+) were obtained by isothermal titration microcalorimetry (ITC) in MeCN at 25 °C. Compounds 1-4 were characterized in the solid state by X-ray crystallography. The stabilization within and beyond these molecules is achieved by a combination of intra- and intermolecular [C-H· · · O], [C-H· · ·π], and [π-π] stacking interactions. The diethyleneglycol chains present in compounds 1-4 are folded as a consequence of both intra- and intermolecular hydrogen bonds. The preorganized structures in both precursors 1 and 3 are repeated in both model compounds 2 and 4. In the structures of compounds 2 and 4, the geometry of the rigid backbone is differentsthe two terminal phenyl groups are twisted with respect to the central benzenoid ring in compound 2 and roughly perpendicular to the plane central naphthalene core in compound 4. To understand the significantly decreased stabilities of these complexes toward rigid guest molecules, relative to more flexible systems, we performed density functional theory (DFT) calculations using the newly developed M06-suite of density functionals. We conclude that the reduced binding abilities are a consequence of electronic and not steric factors, originating from the extended delocalization of the aromatic system

Low molecular weight ϵ-caprolactone-pcoumaric acid copolymers as potential biomaterials for skin regeneration applications

ϵ-caprolactone-p-coumaric acid copolymers at different mole ratios (ϵ-caprolactone:p-coumaric acid 1:0, 10:1, 8:1, 6:1, 4:1, and 2:1) were synthesized by melt-polycondensation and using 4-dodecylbenzene sulfonic acid as catalyst. Chemical analysis by NMR and GPC showed that copolyesters were formed with decreasing molecular weight as p-coumaric acid content was increased. Physical characteristics, such as thermal and mechanical properties, as well as water uptake and water permeability, depended on the mole fraction of pcoumaric acid. The p-coumarate repetitive units increased the antioxidant capacity of the copolymers, showing antibacterial activity against the common pathogen Escherichia coli. In addition, all the synthesized copolyesters, except the one with the highest concentration of the phenolic acid, were cytocompatible and hemocompatible, thus becoming potentially useful for skin regeneration applications