Quantifying the effect of aerial imagery resolution in automated hydromorphological river characterisation

Existing regulatory frameworks aiming to improve the quality of rivers place hydromorphology as a key factor in the assessment of hydrology, morphology and river continuity. The majority of available methods for hydromorphological characterisation rely on the identification of homogeneous areas (i.e., features) of flow, vegetation and substrate. For that purpose, aerial imagery is used to identify existing features through either visual observation or automated classification techniques. There is evidence to believe that the success in feature identification relies on the resolution of the imagery used. However, little effort has yet been made to quantify the uncertainty in feature identification associated with the resolution of the aerial imagery. This paper contributes to address this gap in knowledge by contrasting results in automated hydromorphological feature identification from unmanned aerial vehicles (UAV) aerial imagery captured at three resolutions (2.5 cm, 5 cm and 10 cm) along a 1.4 km river reach. The results show that resolution plays a key role in the accuracy and variety of features identified, with larger identification errors observed for riffles and side bars. This in turn has an impact on the ecological characterisation of the river reach. The research shows that UAV technology could be essential for unbiased hydromorphological assessment

Designing a soil pH monitoring network for the Western Australian wheatbelt

Natural resource managers in Western Australia require a purposely designed soil pH monitoring network to identify areas at higher risk of soil acidification and to observe changes in soil pH through time. This monitoring network, in conjunction with field experimental work and acidification modelling, will identify state and regional trends and help shape state natural resource management policy and regional extension programmes, as well as directly inform industry and land managers

Impact of an 11-week Nordic Pole Walking Program on the Overall Feelings of Health, Wellbeing and Motivation in Older Adults

Nordic Pole Walking (NPW), the act of walking with poles, is an activity that promotes health and wellness for individuals of all ages and fitness levels. For older adults, this activity can be part of a healthy lifestyle while assisting with balance and encouraging correct gait for those who require additional support. The Sheridan Centre for Elder Research, in partnership with Nordixx Canada, offered an 11-week Nordic Pole Walking program (20 hours) to evaluate its impact on the overall feelings of health, well-being and motivation in older adults. A total of sixteen people participated (14 female, 2 male), and each participant completed a comprehensive battery of surveys and standardized evaluations of health, physical activity levels and motivation. Results showed that participants enjoyed the ‘walk and talk’ component and reported improved fitness levels and eagerness to continue Nordic Pole Walking after the project ended

Analysis of uncertainties in the estimates of nitrous oxide and methane emissions in the UK’s greenhouse gas inventory for agriculture

The UK’s greenhouse gas inventory for agriculture uses a model based on the IPCC Tier 1 and Tier 2 26 methods to estimate the emissions of methane and nitrous oxide from agriculture. The inventory 27 calculations are disaggregated at country level (England, Wales, Scotland and Northern Ireland). 28 Before now, no detailed assessment of the uncertainties in the estimates of emissions had been 29 done. We used Monte Carlo simulation to do such an analysis. We collated information on the 30 uncertainties of each of the model inputs. The uncertainties propagate through the model and result 31 in uncertainties in the estimated emissions. Using a sensitivity analysis, we found that in England and 32 Scotland the uncertainty in the emission factor for emissions from N inputs (EF1) affected 33 uncertainty the most, but that in Wales and Northern Ireland, the emission factor for N leaching and 34 runoff (EF5) had greater influence. We showed that if the uncertainty in any one of these emission 35 factors is reduced by 50%, the uncertainty in emissions of nitrous oxide reduces by 10%. The 36 uncertainty in the estimate for the emissions of methane emission factors for enteric fermentation 37 in cows and sheep most affected the uncertainty in methane emissions. When inventories are 38 disaggregated (as that for the UK is) correlation between separate instances of each emission factor 39 will affect the uncertainty in emissions. As more countries move towards inventory models with 40 disaggregation, it is important that the IPCC give firm guidance on this topic

Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution

Immune evasion is a hallmark of cancer. Losing the ability to present neoantigens through human leukocyte antigen (HLA) loss may facilitate immune evasion. However, the polymorphic nature of the locus has precluded accurate HLA copy-number analysis. Here, we present loss of heterozygosity in human leukocyte antigen (LOHHLA), a computational tool to determine HLA allele-specific copy number from sequencing data. Using LOHHLA, we find that HLA LOH occurs in 40% of non-small-cell lung cancers (NSCLCs) and is associated with a high subclonal neoantigen burden, APOBEC-mediated mutagenesis, upregulation of cytolytic activity, and PD-L1 positivity. The focal nature of HLA LOH alterations, their subclonal frequencies, enrichment in metastatic sites, and occurrence as parallel events suggests that HLA LOH is an immune escape mechanism that is subject to strong microenvironmental selection pressures later in tumor evolution. Characterizing HLA LOH with LOHHLA refines neoantigen prediction and may have implications for our understanding of resistance mechanisms and immunotherapeutic approaches targeting neoantigens. Video Abstract [Figure presented] Development of the bioinformatics tool LOHHLA allows precise measurement of allele-specific HLA copy number, improves the accuracy in neoantigen prediction, and uncovers insights into how immune escape contributes to tumor evolution in non-small-cell lung cancer

Fc-Optimized Anti-CD25 Depletes Tumor-Infiltrating Regulatory T Cells and Synergizes with PD-1 Blockade to Eradicate Established Tumors

CD25 is expressed at high levels on regulatory T (Treg) cells and was initially proposed as a target for cancer immunotherapy. However, anti-CD25 antibodies have displayed limited activity against established tumors. We demonstrated that CD25 expression is largely restricted to tumor-infiltrating Treg cells in mice and humans. While existing anti-CD25 antibodies were observed to deplete Treg cells in the periphery, upregulation of the inhibitory Fc gamma receptor (FcγR) IIb at the tumor site prevented intra-tumoral Treg cell depletion, which may underlie the lack of anti-tumor activity previously observed in pre-clinical models. Use of an anti-CD25 antibody with enhanced binding to activating FcγRs led to effective depletion of tumor-infiltrating Treg cells, increased effector to Treg cell ratios, and improved control of established tumors. Combination with anti-programmed cell death protein-1 antibodies promoted complete tumor rejection, demonstrating the relevance of CD25 as a therapeutic target and promising substrate for future combination approaches in immune-oncology

Fc Effector Function Contributes to the Activity of Human Anti-CTLA-4 Antibodies.

With the use of a mouse model expressing human Fc-gamma receptors (FcγRs), we demonstrated that antibodies with isotypes equivalent to ipilimumab and tremelimumab mediate intra-tumoral regulatory T (Treg) cell depletion in vivo, increasing the CD8+ to Treg cell ratio and promoting tumor rejection. Antibodies with improved FcγR binding profiles drove superior anti-tumor responses and survival. In patients with advanced melanoma, response to ipilimumab was associated with the CD16a-V158F high affinity polymorphism. Such activity only appeared relevant in the context of inflamed tumors, explaining the modest response rates observed in the clinical setting. Our data suggest that the activity of anti-CTLA-4 in inflamed tumors may be improved through enhancement of FcγR binding, whereas poorly infiltrated tumors will likely require combination approaches

Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.

The early detection of relapse following primary surgery for non-small-cell lung cancer and the characterization of emerging subclones, which seed metastatic sites, might offer new therapeutic approaches for limiting tumour recurrence. The ability to track the evolutionary dynamics of early-stage lung cancer non-invasively in circulating tumour DNA (ctDNA) has not yet been demonstrated. Here we use a tumour-specific phylogenetic approach to profile the ctDNA of the first 100 TRACERx (Tracking Non-Small-Cell Lung Cancer Evolution Through Therapy (Rx)) study participants, including one patient who was also recruited to the PEACE (Posthumous Evaluation of Advanced Cancer Environment) post-mortem study. We identify independent predictors of ctDNA release and analyse the tumour-volume detection limit. Through blinded profiling of postoperative plasma, we observe evidence of adjuvant chemotherapy resistance and identify patients who are very likely to experience recurrence of their lung cancer. Finally, we show that phylogenetic ctDNA profiling tracks the subclonal nature of lung cancer relapse and metastasis, providing a new approach for ctDNA-driven therapeutic studies

Designing a soil pH monitoring network for the Western Australian wheatbelt

Natural resource managers in Western Australia require a purposely designed soil pH monitoring network to identify areas at higher risk of soil acidification and to observe changes in soil pH through time. This monitoring network, in conjunction with field experimental work and acidification modelling, will identify state and regional trends and help shape state natural resource management policy and regional extension programmes, as well as directly inform industry and land managers