Soil Phosphorus Uptake by Continuously Cropped Lupinus albus: A New Microcosm Design

When grown in soils with sparingly available phosphorus (P), white lupin (Lupinus albus L.) forms special root structures, called cluster roots, which secrete large amounts of organic acids and concomitantly acidify the rhizosphere. Many studies dealing with the understanding of this P acquisition strategy have been performed in short time experiments either in hydroponic cultures or in small microcosm designs with sand or sand:soil mixtures. In the present study, we applied an experimental design which came nearer to the natural field conditions: we performed a one-year experiment on large microcosms containing 7kg of soil and allowing separation of rhizosphere soil and bulk soil. We planted six successive generations of lupins and analysed P uptake, organic P desorption, phosphatase activities and organic acid concentrations in different soil samples along a spatio-temporal gradient. We compared the rhizosphere soil samples of cluster (RSC) and non-cluster roots (RSNC) as well as the bulk soil (BS) samples. A total shoot biomass of 55.69 ± 1.51g(d.w.)y−1 was produced and P uptake reached 220.59 ± 5.99mgy−1. More P was desorbed from RSC than from RSNC or BS (P < 0.05). RSC and RSNC showed a higher activity of acid and alkaline phosphatases than BS samples and a higher acid phosphatase activity was observed in RSC than in RSNC throughout the one-year experiment. Fumarate was the most abundant organic acid in all rhizosphere soil samples. Citrate was only present in detectable amounts in RSC while malate and fumarate were recovered from both RSC and RSNC. Almost no organic acids could be detected in the BS samples. Our results demonstrated that over a one-year cultivation period in the absence of an external P supply, white lupin was able to acquire phosphate from the soil and that the processes leading to this P uptake took place preferentially in the rhizosphere of cluster root

U-Pb zircon dating of the Gruf Complex: disclosing the late Variscan granulitic lower crust of Europe stranded in the Central Alps

Permian granulites associated with noritic intrusions and websterites are a common feature of the post-Variscan European crust. Such granulites are common in the Southern Alps (e.g. Ivrea Zone), but occur only in the Gruf Complex in the Central Alps. To understand the geotectonic significance of these granulites, in particular in the context of Alpine migmatisation, zircons from 15 high-grade samples have been U-Pb dated by SHRIMP II analysis. Oscillatory zoned zircons from charnockite sheets, interpreted as melts generated through granulite facies fluid-absent biotite melting at 920-940°C, yield ages of 282-260Ma. Some of these zircons contain inclusions of opx, unequivocally attributable to the granulite facies, thus confirming a Permian age for the charnockites and associated granulites. Two samples from an enclave-rich orthogneiss sheet yield Cambrian and Ordovician zircon cores. Two deformed leucogranites and six ortho- and augengneisses, which compose two-thirds of the Gruf Complex, give zircon ages of 290-260Ma. Most zircons have milky rims with ages of 34-29Ma. These rims date the Alpine amphibolite facies migmatisation, an interpretation confirmed by directly dating a leucosome pocket from upper amphibolite facies metapelites. The Gruf charnockites associated with metre-scale schlieren and boudins of opx-sapphirine-garnet-granulites, websterites and gabbronorites can thus be identified as part of the post-Variscan European lower crust. A geotectonic reconstruction reveals that this piece of lower crust stranded in the (European) North upon rifting of the Neotethys, such contrasting the widespread granulite units in the Southern Alps. Emplacement of the Gruf lower crust into its present-day position occurred during migmatisation and formation of the Bergell Pluton in the aftermath of the breakoff of the European sla

Fungicidal effect of three plants extracts in control of four phytopathogenic fungi of tomato (Lycopersicum esculentum L.) fruit rot.

Fungicidal effect of leaf aqueous extracts of Azadirachta indica, Tithonia diversifolia and Chromolaena odorata were determined on rot causing fungi. In the study, the phytopathogenic fungi isolated from the infected tomato fruit parts and identified based on morphological and cultural characters were: Aspergillus Niger Van Tiegh, Fusarium oxysporum Schlecht, Geotrichum candidium Link and Rhizopus stolonifer Ehrenb. ex. Fr. as confirmed by pathogenicity tests. Leaf aqueous extracts of different concentrations (20, 40, 80, 60 and 100 % w/v) of A. indica, T. diversifolia and C. odorata were added to growth media prior to inoculation. All aqueous extracts of the tested plants significantly (p < 0.05) reduced mycelial growth of the fungal pathogens and this effect gradually increased with increasing concentration. Fungicidal activity was strongly exhibited by A. indica extract at 100% w/v against all the pathogenic fungi. In the case of T. diversifolia extracts inhibitiory effects at 20, 40, 60, 80 and 100% w/v were greater than those of C. odorata on A. Niger , F. oxysporum and G. candidium while for R. stolonifer inhibition, C. odorata produced the highest in the all five concentrations than T. diversifolia extracts. It could be emphatically concluded that the tested plant extracts can effectively control rot causing fungi disease of tomato. This makes them potential biocide in diseases management in that they are cheap and environmentally safe as they showed fungicidal and fungitoxic ability

Evidence for intense REE scavenging at cold seeps from the Niger Delta margin

International audienceFor many trace elements, continental margins are the location of intense exchange processes between sediment and seawater, which control their distribution in the water column, but have yet to be fully understood. In this study, we have investigated the impact of fluid seepage at cold seeps on the marine cycle of neodymium. We determined dissolved and total dissolvable (TD) concentrations for REE and well-established tracers of fluid seepage (CH4, TDFe, TDMn), and Nd isotopic compositions in seawater samples collected above cold seeps and a reference site (i.e. away from any fluid venting area) from the Niger Delta margin. We also analyzed cold seep authigenic phases and various core-top sediment fractions (pore water, detrital component, easily leachable phases, uncleaned foraminifera) recovered near the hydrocast stations. Methane, TDFe and TDMn concentrations clearly indicate active fluid venting at the studied seeps, with plumes rising up to about 100 m above the seafloor. Depth profiles show pronounced REE enrichments in the non-filtered samples (TD concentrations) within plumes, whereas filtered samples (dissolved concentrations) exhibit slight REE depletion in plumes relative to the overlying water column and display typical seawater REE patterns. These results suggest that the net flux of REE emitted into seawater at cold seeps is controlled by the presence of particulate phases, most probably Fe-Mn oxyhydroxides associated to resuspended sediments. At the reference site, however, our data reveal significant enrichment for dissolved REE in bottom waters, that clearly relates to diffusive benthic fluxes from surface sediments. Neodymium isotopic ratios measured in the water column range from εNd ~−15.7 to − 10.4. Evidence that the εNd values for Antarctic Intermediate waters (AAIW) differed from those reported for the same water mass at open ocean settings shows that sediment/water interactions take place in the Gulf of Guinea. At each site, however, the bottom water εNd signature generally differs from that for cold seep minerals, easily leachable sediment phases, and detrital fractions from local sediments, ruling out the possibility that seepage of methane-rich fluids and sediment dissolution act as a substantial source of dissolved Nd to seawater in the Gulf of Guinea. Taken together, our data hence suggest that co-precipitation of Fe-Mn oxyhydroxide phases in sub-surface sediments leads to quantitative scavenging of dissolved REE at cold seeps, preventing their emission into bottom waters. Most probably, it is likely that diffusion from suboxic surface sediments dominates the exchange processes affecting the marine Nd cycle at the Niger Delta margin

Complexes of tetracyanobiimidazole.4.dimers of Cu(I)

In this paper we described dimeric complexes of Cu(I) with 4,4',5,5'-tetracyano-2,2'-biimidazole (H2Tcbiim). These compounds contain the dianion (Tcbiim2-) acting as a quadridentate bridge betwee Cu(I) ions in combinations with phosphine, phosphite, pyridine, and quinuclidine ligands. Syntheses and interconversions among these species are recorded. The structure of Cu2[P(OPh)3]2(Py)2Tcbiim Py was determined by X-ray crystallography. The composition Cu2P2O6C61N11H45 crystallizes in the P triclinic space group with A = 10.456(3) A, B = 15.060(5) A, C = 10.438(2) A, [alpha] = 94.89(2), [beta] = 115.93(2), [gamma] = 72.76(2) and Z = 1 molecule per cell. A final agreement of R = 0.035, Rw = 0.042 was obtained for 2743 observed reflections. The dimeric molecule has an inversion center between the 2,2' carbon atoms of Tcbiim2-. Each Cu atom is tetrahedrally coordinated with angles ranging from 101[deg]-126[deg]. As a result of steric crowding by the phenyl rings of P(OPh)3 the copper atoms are somewhat sequestered. The influence of the stric and electronic factors can be seen in the oxidation potentials obtained from cyclic voltammetry. The potentials for the successive one electron oxidation of the dimers vary greatly with the donor strength of the ligands.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/24723/1/0000145.pd

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Background Studying genomic variation in rapidly evolving pathogens potentially enables identification of genes supporting their “core biology”, being present, functional and expressed by all strains or “flexible biology”, varying between strains. Genes supporting flexible biology may be considered to be “accessory”, whilst the “core” gene set is likely to be important for common features of a pathogen species biology, including virulence on all host genotypes. The wheat-pathogenic fungus Zymoseptoria tritici represents one of the most rapidly evolving threats to global food security and was the focus of this study. Results We constructed a pangenome of 18 European field isolates, with 12 also subjected to RNAseq transcription profiling during infection. Combining this data, we predicted a “core” gene set comprising 9807 sequences which were; (1) present in all isolates; (2) lacking inactivating polymorphisms; and (3) expressed by all isolates. A large accessory genome, consisting of 45% of the total genes was also defined. We classified genetic and genomic polymorphism at both chromosomal and individual gene scales. Proteins required for essential functions including virulence, had lower-than average sequence variability amongst core genes. Both core and accessory genomes encoded many small, secreted candidate effector proteins that likely interact with plant immunity. Viral vector-mediated transient in planta overexpression of 88 candidates failed to identify any which induced leaf necrosis characteristic of disease. However, functional complementation of a non-pathogenic deletion mutant lacking five core genes, demonstrated that full virulence was restored by re-introduction of the single gene exhibiting least sequence polymorphism and highest expression. Conclusions These data support the combined use of pangenomics and transcriptomics for defining genes which represent core, and potentially exploitable, weaknesses in rapidly evolving pathogens

TerrHum: an iPhone app for classifying forest humipedons.

The knowledge of a little number of specific terms is necessary to investigate and describe the forest topsoils: diagnostic components, diagnostic organic and organic-mineral horizons and the 17 series of humus horizons composing all the observed real forest not submerged topsoils. Diagnostic horizons are grouped in humus forms, which represent five humus systems. To become a good topsoil investigator is then only a question of field experience. No mean to do otherwise: you must go in the field with a blade and a good manual and put your hand in the soil. You have to make a hole and to observe on your knee a wall of the pit, from the top to the bottom, detecting all the characters that you find indicated in the manual. At the beginning you will be discouraged, things change from a site to another and never are exactly as in the manual. After few days of difficult survey, you will be able to know your soil even without doing a hole. Be patient and follow what it is indicated in the published first eight articles of Humusica (http://intra.tesaf.unipd.it/people/zanella/hmanual.html). On the poster, you find some examples of diagnostic properties of forest topsoils, and a dichotomy key of classification, you can copy paste and take with you in the field. An iPhone application (Terrhum) allows to bring in the field the necessary information for a fast classification of the topsoil

Grooved poly(lactide-co-trimethylene carbonate) substrates in tenogenic media maintain human tendon derived cell phenotype in culture – A preliminary report

Tissue engineering strategies for tendon repair and regeneration rely heavily on the use of tendon derived cells. However, these cells frequently undergo phenotypic drift in vitro, which compromises their therapeutic potential. In order to maintain the phenotype of tendon derived cells in vitro, microenvironmental cues (biophysical, biochemical and/or biological in origin) have been used to better imitate the complex tendon microenvironment. Herein, the influence of planar and grooved (groove width of ∼1.0 µm, groove depth of ∼1.4 µm and distance between groves of ∼1.7 µm) poly(glycolide-co-ε-caprolactone) substrates with elastic modulus of 7 kPa and poly(lactide-co-trimethylene carbonate) substrates with elastic modulus of 12 kPa on human tendon derived cell response was assessed, using planar tissue culture plastic substrates of 3 GPa elastic modulus as control, in both basal and tenogenic media. At day 17, the grooved 12 kPa poly(lactide-co-trimethylene carbonate) substrate induced the highest deposition and alignment of collagen type I in tenogenic media. At day 17, the grooved 12 kPa poly(lactide-co-trimethylene carbonate) substrate and the tissue culture plastic induced the highest deposition and the tissue culture plastic and the planar 7 kPa poly(glycolide-co-ε-caprolactone) induced the lowest alignment of tenascin C in tenogenic media. Also at day 17 in tenogenic media, the grooved 12 kPa poly(lactide-co-trimethylene carbonate) substrate induced the upregulation of most tenogenic genes (COL1A1, COL3A1, MKX, TNMD). Our data further support the notion of multifactorial tissue engineering for effective control over cell fate in vitro setting.This work has also received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie, grant agreement No. 676338, the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme, grant agreement No. 866126 and the European Union's Horizon 2020 research and innovation Widespread: Twinning programme, grant agreement No. 810850. This publication has emanated from research supported in part by grants from Science Foundation Ireland (SFI) under grant agreement No. 15/CDA/3629 and 19/FFP/6982 and Science Foundation Ireland (SFI) and European Regional Development Fund (ERDF) under grant agreement No. 13/RC/2073_2. E.M.F. acknowledges to the project TERM RES Hub – Infraestrutura Científica para a Engenharia de Tecidos e Medicina Regenerativa, grant agreement No. Norte-01–0145-FEDER-02219015. The authors would like to acknowledge the significant contribution of Dr Oonagh Dwane (University of Galway, Ireland) in the writing and management of all grants