MACiE: a database of enzyme reaction mechanisms.

SUMMARY: MACiE (mechanism, annotation and classification in enzymes) is a publicly available web-based database, held in CMLReact (an XML application), that aims to help our understanding of the evolution of enzyme catalytic mechanisms and also to create a classification system which reflects the actual chemical mechanism (catalytic steps) of an enzyme reaction, not only the overall reaction. AVAILABILITY: http://www-mitchell.ch.cam.ac.uk/macie/.EPSRC (G.L.H. and J.B.O.M.), the BBSRC (G.J.B. and J.M.T.—CASE studentship in association with Roche Products Ltd; N.M.O.B. and J.B.O.M.—grant BB/C51320X/1), the Chilean Government’s Ministerio de Planificacio´n y Cooperacio´n and Cambridge Overseas Trust (D.E.A.) for funding and Unilever for supporting the Centre for Molecular Science Informatics.application note restricted to 2 printed pages web site: http://www-mitchell.ch.cam.ac.uk/macie

Adaptive Measurements in the Optical Quantum Information Laboratory

Adaptive techniques make practical many quantum measurements that would otherwise be beyond current laboratory capabilities. For example: they allow discrimination of nonorthogonal states with a probability of error equal to the Helstrom bound; they allow measurement of the phase of a quantum oscillator with accuracy approaching (or in some cases attaining) the Heisenberg limit; and they allow estimation of phase in interferometry with a variance scaling at the Heisenberg limit, using only single qubit measurement and control. Each of these examples has close links with quantum information, in particular experimental optical quantum information: the first is a basic quantum communication protocol; the second has potential application in linear optical quantum computing; the third uses an adaptive protocol inspired by the quantum phase estimation algorithm. We discuss each of these examples, and their implementation in the laboratory, but concentrate upon the last, which was published most recently [Higgins {\em et al.}, Nature vol. 450, p. 393, 2007].Comment: 12 pages, invited paper to be published in IEEE Journal of Selected Topics in Quantum Electronics: Quantum Communications and Information Scienc

Plasmon assisted transmission of high dimensional orbital angular momentum entangled state

We present an experimental evidence that high dimensional orbital angular momentum entanglement of a pair of photons can be survived after a photon-plasmon-photon conversion. The information of spatial modes can be coherently transmitted by surface plasmons. This experiment primarily studies the high dimensional entangled systems based on surface plasmon with subwavelength structures. It maybe useful in the investigation of spatial mode properties of surface plasmon assisted transmission through subwavelength hole arrays.Comment: 7 pages,6 figure

SXP 7.92: A Recently Rediscovered Be/X-ray Binary in the Small Magellanic Cloud, Viewed Edge On

We present a detailed optical and X-ray study of the 2013 outburst of the Small Magellanic Cloud Be/X-ray binary SXP 7.92, as well as an overview of the last 18 years of observations from OGLE (Optical Gravitational Lensing Experiment), RXTE, Chandra and XMM-Newton. We revise the position of this source to RA(J2000) = 00:57:58.4, Dec(J2000) = −72:22:29.5 with a 1σ uncertainty of 1.5 arcsec, correcting the previously reported position by Coe et al. by more than 20 arcmin. We identify and spectrally classify the correct counterpart as a B1Ve star. The optical spectrum is distinguished by an uncharacteristically deep narrow Balmer series, with the Hα line in particular having a distinctive shell profile, i.e. a deep absorption core embedded in an emission line. We interpret this as evidence that we are viewing the system edge on and are seeing self-obscuration of the circumstellar disc. We derive an optical period for the system of 40.0 ± 0.3 d, which we interpret as the orbital period, and present several mechanisms to describe the X-ray/optical behaviour in the recent outburst, in particular the ‘flares'and ‘dips’ seen in the optical light curve, including a transient accretion disc and an elongated precessing disc

Optimizing Observational Strategy for Future Fgas Constraints

The Planck cluster catalog is expected to contain of order a thousand galaxy clusters, both newly discovered and previously known, detected through the Sunyaev-Zeldovich effect over the redshift range 0 < z < 1. Follow-up X-ray observations of a dynamically relaxed sub-sample of newly discovered Planck clusters will improve constraints on the dark energy equation-of-state found through measurement of the cluster gas mass fraction fgas. In view of follow-up campaigns with XMM-Newton and Chandra, we determine the optimal redshift distribution of a cluster sample to most tightly constrain the dark energy equation of state. The distribution is non-trivial even for the standard w0-wa parameterization. We then determine how much the combination of expected data from the Planck satellite and fgas data will be able to constrain the dark energy equation-of-state. Our analysis employs a Markov Chain Monte Carlo method as well as a Fisher Matrix analysis. We find that these upcoming data will be able to improve the figure-of-merit by at least a factor two.Comment: 11 pages, 8 figure

Application of ecological, geological and oceanographic ERTS-1 imagery to Delaware's coastal resources management

The author has identified the following significant results. Data from twelve successful ERTS-1 passes over Delaware Bay have been analyzed with special emphasis on coastal vegetation, land use, current circulation, water turbidity and pollution dispersion. Secchi depth, suspended sediment concentration and transmissivity as measured from helicopters and boats were correlated with ERTS-1 image radiance. Multispectral signatures of acid disposal plumes, sediment plumes and slick were investigated. Ten vegetative cover and water discrimination classes were selected for mapping: (1) forest-land; (2) Phragmites communis; (3) Spartina patens and Distichlis spicata; (4) Spartina alterniflora; (5) cropland; (6) plowed cropland; (7) sand and bare sandy soil; (8) bare mud; (9) deep water; and (10) sediment-laden and shallow water. Canonical analysis predicted good classification accuracies for most categories. The actual classification accuracies were very close to the predicted values with 8 of 10 categories classified with greater than 90% accuracy indicating that representative training sets had been selected

Experimental feedback control of quantum systems using weak measurements

A goal of the emerging field of quantum control is to develop methods for quantum technologies to function robustly in the presence of noise. Central issues are the fundamental limitations on the available information about quantum systems and the disturbance they suffer in the process of measurement. In the context of a simple quantum control scenario--the stabilization of non-orthogonal states of a qubit against dephasing--we experimentally explore the use of weak measurements in feedback control. We find that, despite the intrinsic difficultly of implementing them, weak measurements allow us to control the qubit better in practice than is even theoretically possible without them. Our work shows that these more general quantum measurements can play an important role for feedback control of quantum systems.Comment: 4 pages, 3 figures. v2 Added extra citation, journal reference and DOI. Minor typographic correction