Radio galaxies and their magnetic fields out to z <= 3

We present polarisation properties at $1.4\,$GHz of two separate extragalactic source populations: passive quiescent galaxies and luminous quasar-like galaxies. We use data from the {\it Wide-Field Infrared Survey Explorer} data to determine the host galaxy population of the polarised extragalactic radio sources. The quiescent galaxies have higher percentage polarisation, smaller radio linear size, and $1.4\,$GHz luminosity of $6\times10^{21}<L_{\rm 1.4}<7\times10^{25}\,$W Hz$^{-1}$, while the quasar-like galaxies have smaller percentage polarisation, larger radio linear size at radio wavelengths, and a $1.4\,$GHz luminosity of $9\times10^{23}<L_{\rm 1.4}<7\times10^{28}\,$W Hz$^{-1}$, suggesting that the environment of the quasar-like galaxies is responsible for the lower percentage polarisation. Our results confirm previous studies that found an inverse correlation between percentage polarisation and total flux density at $1.4\,$GHz. We suggest that the population change between the polarised extragalactic radio sources is the origin of this inverse correlation and suggest a cosmic evolution of the space density of quiescent galaxies. Finally, we find that the extragalactic contributions to the rotation measures (RMs) of the nearby passive galaxies and the distant quasar-like galaxies are different. After accounting for the RM contributions by cosmological large-scale structure and intervening Mg\,{II} absorbers we show that the distribution of intrinsic RMs of the distant quasar-like sources is at most four times as wide as the RM distribution of the nearby quiescent galaxies, if the distribution of intrinsic RMs of the WISE-Star sources itself is at least several rad m$^{-2}$ wide.Comment: 12 pages, 8 figures, accepted for publication into MNRA

Thermal tides in the Martian middle atmosphere as seen by the Mars Climate Sounder

The first systematic observations of the middle atmosphere of Mars (35–80km) with the Mars Climate Sounder (MCS) show dramatic patterns of diurnal thermal variation, evident in retrievals of temperature and water ice opacity. At the time of writing, the data set of MCS limb retrievals is sufficient for spectral analysis within a limited range of latitudes and seasons. This analysis shows that these thermal variations are almost exclusively associated with a diurnal thermal tide. Using a Martian general circulation model to extend our analysis, we show that the diurnal thermal tide dominates these patterns for all latitudes and all seasons

Acid mine drainage biogeochemistry at Iron Mountain, California

The Richmond Mine at Iron Mountain, Shasta County, California, USA provides an excellent opportunity to study the chemical and biological controls on acid mine drainage (AMD) generation in situ, and to identify key factors controlling solution chemistry. Here we integrate four years of field-based geochemical data with 16S rRNA gene clone libraries and rRNA probe-based studies of microbial population structure, cultivation-based metabolic experiments, arsenopyrite surface colonization experiments, and results of intermediate sulfur species kinetics experiments to describe the Richmond Mine AMD system. Extremely acidic effluent (pH between 0.5 and 0.9) resulting from oxidation of approximately 1 × 10(5 )to 2 × 10(5 )moles pyrite/day contains up to 24 g/1 Fe, several g/1 Zn and hundreds of mg/l Cu. Geochemical conditions change markedly over time, and are reflected in changes in microbial populations. Molecular analyses of 232 small subunit ribosomal RNA (16S rRNA) gene sequences from six sites during a sampling time when lower temperature (<32°C), higher pH (>0.8) conditions predominated show the dominance of Fe-oxidizing prokaryotes such as Ferroplasma and Leptospirillum in the primary drainage communities. Leptospirillum group III accounts for the majority of Leptospirillum sequences, which we attribute to anomalous physical and geochemical regimes at that time. A couple of sites peripheral to the main drainage, "Red Pool" and a pyrite "Slump," were even higher in pH (>1) and the community compositions reflected this change in geochemical conditions. Several novel lineages were identified within the archaeal Thermoplasmatales order associated with the pyrite slump, and the Red Pool (pH 1.4) contained the only population of Acidithiobacillus. Relatively small populations of Sulfobacillus spp. and Acidithiobacillus caldus may metabolize elemental sulfur as an intermediate species in the oxidation of pyritic sulfide to sulfate. Experiments show that elemental sulfur which forms on pyrite surfaces is resistant to most oxidants; its solublization by unattached cells may indicate involvement of a microbially derived electron shuttle. The detachment of thiosulfate ([Image: see text]) as a leaving group in pyrite oxidation should result in the formation and persistence of tetrathionate in low pH ferric iron-rich AMD solutions. However, tetrathionate is not observed. Although a [Image: see text]-like species may form as a surface-bound intermediate, data suggest that Fe(3+ )oxidizes the majority of sulfur to sulfate on the surface of pyrite. This may explain why microorganisms that can utilize intermediate sulfur species are scarce compared to Fe-oxidizing taxa at the Richmond Mine site

Pseudomonas syringae type III effector HopAF1 suppresses plant immunity by targeting methionine recycling to block ethylene induction

Pseudomonas syringae is a Gram-negative bacterium that uses a type III secretion system to inject type III effector (T3E) proteins into the host to cause disease in plants. Multiple P. syringae T3Es promote virulence by targeting immune system signaling pathways using diverse biochemical mechanisms. We provide evidence for a molecular function of the P. syringae T3E HopAF1. We demonstrate that the C-terminal region of HopAF1 has structural homology to deamidases. We demonstrate that an enzyme important for production of the gaseous signaling hormone ethylene is a target for HopAF1 and show that HopAF1 targets methylthioadenosine nucleosidase proteins MTN1 and MTN2 to dampen ethylene production during bacterial infection

The WiFeS S7 AGN survey: Current status and recent results on NGC 6300

The Siding Spring Southern Seyfert Spectroscopic Snapshot Survey (S7) is a targeted survey probing the narrow-line regions (NLRs) of a representative sample of ~140 nearby (z<0.02) Seyfert galaxies by means of optical integral field spectroscopy. The survey is based on a homogeneous data set observed using the Wide Field Spectrograph WiFeS. The data provide a 25x38 arcsec$^2$ field-of-view around the galaxy centre at typically ~1.5 arcsec spatial resolution and cover a wavelength range between ~3400 - 7100 $\AA$ at spectral resolutions of ~100 km s$^{-1}$ and ~50 km s$^{-1}$ in the blue and red parts, respectively. The survey is primarily designed to study gas excitation and star formation around AGN, with a special focus on the shape of the AGN ionising continuum, the interaction between radio jets and the NLR gas, and the nature of nuclear LINER emission. We provide an overview of the current status of S7-based results and present new results for NGC 6300.Comment: 5 pages, 1 figure, Refereed Proceeding of the "The Universe of Digital Sky Surveys" conference held at the INAF - Observatory of Capodimonte, Naples, on 25th-28th november 2014, to be published on Astrophysics and Space Science Proceedings, edited by Longo, Napolitano, Marconi, Paolillo, Iodic

Mooring and Foundation Module Framework for DTOcean Tool

PublishedThe Optimal Design Tools for Ocean Energy Arrays project (DTOcean) is developing a system-level tool to assess cost, reliability, and environmental impact for marine renewable energy (MRE) systems. The DTOcean Tool will integrate several modules covering key aspects of MRE systems (i.e., array layout, moorings and foundations, electrical infrastructure, logistics, in addition to operations and maintenance). This report outlines the proposed architecture and main functions of the DTOcean mooring and foundation design module (the Work Package 4 or WP4 module) and its interaction with other elements and modules of the Tool. This document therefore presents the WP4 module framework which will be populated with algorithms and functions as the Tool is further developed. The module will comprise five sub-modules, in which calculations will be performed to determine and/or design the system and environmental loads, the electrical umbilical, mooring, and foundation systems as well as the foundation required for the electrical substation. Calculations performed in the sub-modules will be based on inputs provided by the user, other Tool modules, and data stored within the global Tool database. Criteria for determining design suitability will not be based solely on whether the specified components are suitable for keeping the device in position. The capital cost of each configuration will be estimated within the WP4 module, with reliability and environmental impact assessments also performed within the Tool. The framework of the WP4 module draws upon findings of previous WP4 deliverables, in which applicable mooring and foundation technologies and methods for their analysis have been reported.European Commission’s 7th Framework; Grant agreement number: 60859

Infrared-Faint Radio Sources: A New Population of High-redshift Radio Galaxies

We present a sample of 1317 Infrared-Faint Radio Sources (IFRSs) that, for the first time, are reliably detected in the infrared, generated by cross-correlating the Wide-Field Infrared Survey Explorer (WISE) all-sky survey with major radio surveys. Our IFRSs are brighter in both radio and infrared than the first generation IFRSs that were undetected in the infrared by the Spitzer Space Telescope. We present the first spectroscopic redshifts of IFRSs, and find that all but one of the IFRSs with spectroscopy has z > 2. We also report the first X-ray counterparts of IFRSs, and present an analysis of radio spectra and polarization, and show that they include Gigahertz-Peaked Spectrum, Compact Steep Spectrum, and Ultra-Steep Spectrum sources. These results, together with their WISE infrared colours and radio morphologies, imply that our sample of IFRSs represents a population of radio-loud Active Galactic Nuclei at z > 2. We conclude that our sample consists of lower-redshift counterparts of the extreme first generation IFRSs, suggesting that the fainter IFRSs are at even higher redshift.Comment: 23 pages, 17 figures. Submitted to MNRA

What a Difference a Dalton Makes: Bacterial Virulence Factors Modulate Eukaryotic Host Cell Signaling Systems via Deamidation

Pathogenic bacteria commonly deploy enzymes to promote virulence. These enzymes can modulate the functions of host cell targets. While the actions of some enzymes can be very obvious (e.g., digesting plant cell walls), others have more subtle activities. Depending on the lifestyle of the bacteria, these subtle modifications can be crucially important for pathogenesis. In particular, if bacteria rely on a living host, subtle mechanisms to alter host cellular function are likely to dominate. Several bacterial virulence factors have evolved to use enzymatic deamidation as a subtle posttranslational mechanism to modify the functions of host protein targets. Deamidation is the irreversible conversion of the amino acids glutamine and asparagine to glutamic acid and aspartic acid, respectively. Interestingly, all currently characterized bacterial deamidases affect the function of the target protein by modifying a single glutamine residue in the sequence. Deamidation of target host proteins can disrupt host signaling and downstream processes by either activating or inactivating the target. Despite the subtlety of this modification, it has been shown to cause dramatic, context-dependent effects on host cells. Several crystal structures of bacterial deamidases have been solved. All are members of the papain-like superfamily and display a cysteine-based catalytic triad. However, these proteins form distinct structural subfamilies and feature combinations of modular domains of various functions. Based on the diverse pathogens that use deamidation as a mechanism to promote virulence and the recent identification of multiple deamidases, it is clear that this enzymatic activity is emerging as an important and widespread feature in bacterial pathogenesis