Kudoa unicapsula n. sp. (Myxosporea: Kudoidae) a parasite of the Mediterranean mullets Liza ramada and L. aurata (Teleostei: Mugilidae)

A new multivalvulid myxozoan parasite, Kudoa unicapsula n. sp., is described from the intestinal mesentery, intestine and pyloric caeca of the thin-lipped grey mullet Liza ramada (Risso 1826) and the golden grey mullet L. aurata (Risso, 1810) from the Mediterranean coastal waters of Spain. It is characterized by the presence of elongated, rice corn-like white cysts of 0.47–0.56×0.18–0.38 mm, filled with tetracapsulate, slightly asymmetric spores, rectangular in apical view and tear-shaped in lateral view with four polar capsules of considerably different size and slightly unequal spore valves with rounded edges, overlapping each other on the apex of the spore. One large polar capsule includes a polar filament coiled in two to three turns, and the other three polar capsules, which are very small, posses only a rudimental filament. Both light and electron microscopy data showed that this species differs from all previously described Kudoa spp. with unequal polar capsules. The molecular analysis based on 18S and 28S ribosomal deoxyribonucleic acid DNA sequence data of K. unicapsula n. sp. indicates a close relationship and thus phylogenetic clustering together with K. trifolia, a myxozoan from the same host and the same geographical location

Hierarchical autoclassification of cryo-EM samples and macromolecular energy landscape determination

Background and objective: Cryo-electron microscopy using single particle analysis is a powerful technique for obtaining 3D reconstructions of macromolecules in near native conditions. One of its major advances is its capacity to reveal conformations of dynamic molecular complexes. Most popular and successful current approaches to analyzing heterogeneous complexes are founded on Bayesian inference. However, these 3D classification methods require the tuning of specific parameters by the user and the use of complicated 3D re-classification procedures for samples affected by extensive heterogeneity. Thus, the success of these approaches highly depends on the user experience. We introduce a robust approach to identify many different conformations presented in a cryo-EM dataset based on Bayesian inference through Relion classification methods that does not require tuning of parameters and reclassification strategies. Methods: The algorithm allows both 2D and 3D classification and is based on a hierarchical clustering approach that runs automatically without requiring typical inputs, such as the number of conformations present in the dataset or the required classification iterations. This approach is applied to robustly determine the energy landscapes of macromolecules. Results: We tested the performance of the methods proposed here using four different datasets, comprising structurally homogeneous and highly heterogeneous cases. In all cases, the approach provided excellent results. The routines are publicly available as part of the CryoMethods plugin included in the Scipion package. Conclusions: Our results show that the proposed method can be used to align and classify homogeneous and heterogeneous datasets without requiring previous alignment information or any prior knowledge about the number of co-existing conformations. The approach can be used for both 2D and 3D autoclassification and only requires an initial volume. In addition, the approach is robust to the "attractor" problem providing many different conformations/views for samples affected by extensive heterogeneity. The obtained 3D classes can render high resolution 3D structures, while the obtained energy landscapes can be used to determine structural trajectories

Crop residue grazing and tillage systems effects on soil physical properties and corn (Zea Mays L.) performance

Crop-livestock systems under no till (NT) could negatively affect soil physical properties and crop performance, due to the additive effects of reduced soil cover and cattle trampling due to livestock grazing, and the absence of tillage. We evaluated the effects of four grazing strategies and of a shallow tillage (ST) on soil physical properties and corn (Zea mays L.) performance for a mollisol after 15 years under crop-livestock systems under NT in Argentina. Grazing strategies evaluated were: closure (C), one grazing (OG), high stocking rate (HR) and farmer's management (FM), and the tillage systems were: NT and ST. Bulk density (BD), penetration resistance (PR), hydraulic conductivity (ks), plant population, surface root distribution, aboveground dry matter accumulation, aboveground total N (TN) accumulation and corn yield were evaluated. High stocking rate and FM increased RP. On the other hand, ST decreased PR and BD and increased ks. Corn yield was higher under ST than under NT, and under HR than under the other grazing strategies. Total N accumulation was higher under HR than under the rest of grazing strategies. Rational grazing management and use of tillage systems on resilient soils could have prevented soil physical properties be affected beyond critical thresholds.Facultad de Ciencias Agrarias y Forestale

Crop residue grazing and tillage systems effects on soil physical properties and corn (Zea Mays L.) performance

Crop-livestock systems under no till (NT) could negatively affect soil physical properties and crop performance, due to the additive effects of reduced soil cover and cattle trampling due to livestock grazing, and the absence of tillage. We evaluated the effects of four grazing strategies and of a shallow tillage (ST) on soil physical properties and corn (Zea mays L.) performance for a mollisol after 15 years under crop-livestock systems under NT in Argentina. Grazing strategies evaluated were: closure (C), one grazing (OG), high stocking rate (HR) and farmer's management (FM), and the tillage systems were: NT and ST. Bulk density (BD), penetration resistance (PR), hydraulic conductivity (ks), plant population, surface root distribution, aboveground dry matter accumulation, aboveground total N (TN) accumulation and corn yield were evaluated. High stocking rate and FM increased RP. On the other hand, ST decreased PR and BD and increased ks. Corn yield was higher under ST than under NT, and under HR than under the other grazing strategies. Total N accumulation was higher under HR than under the rest of grazing strategies. Rational grazing management and use of tillage systems on resilient soils could have prevented soil physical properties be affected beyond critical thresholds.Facultad de Ciencias Agrarias y Forestale

Morphology of supported polymer electrolyte ultra-thin films: a numerical study

Morphology of polymer electrolytes membranes (PEM), e.g., Nafion, inside PEM fuel cell catalyst layers has significant impact on the electrochemical activity and transport phenomena that determine cell performance. In those regions, Nafion can be found as an ultra-thin film, coating the catalyst and the catalyst support surfaces. The impact of the hydrophilic/hydrophobic character of these surfaces on the structural formation of the films has not been sufficiently explored yet. Here, we report about Molecular Dynamics simulation investigation of the substrate effects on the ionomer ultra-thin film morphology at different hydration levels. We use a mean-field-like model we introduced in previous publications for the interaction of the hydrated Nafion ionomer with a substrate, characterized by a tunable degree of hydrophilicity. We show that the affinity of the substrate with water plays a crucial role in the molecular rearrangement of the ionomer film, resulting in completely different morphologies. Detailed structural description in different regions of the film shows evidences of strongly heterogeneous behavior. A qualitative discussion of the implications of our observations on the PEMFC catalyst layer performance is finally proposed

Creation and implementation of a European registry for patients with McArdle disease and other muscle glycogenoses (EUROMAC registry)

BACKGROUND: International patient registries are of particular importance for rare disorders, as they may contribute to overcome the lack of knowledge derived from low number of patients and limited awareness of these diseases, and help to learn more about their geographical or population-based specificities, which is relevant for research purposes and for promoting better standards of care and diagnosis. Our objective was to create and implement a European registry for patients with McArdle disease and other muscle glycogenoses (EUROMAC) and to disseminate the knowledge of these disorders. RESULTS: Teams from nine different countries (United Kingdom, Spain, Italy, France, Germany, Denmark, Greece, Turkey and USA) created a consortium that developed the first European registry dedicated to rare muscle glycogenoses. A work plan was implemented to design the database and platform that constitute the registry, by choosing clinical, genetics and molecular variables of interest, based on experience gained from previous national registries for similar metabolic disorders. Among dissemination activities, several teaching events were organized in different countries, especially those where the consortium considered the awareness of these diseases needs to be promoted among health professionals and patients. CONCLUSION: EUROMAC represents a step forward in the knowledge of those disorders to which it is dedicated, and will have relevant clinical outcomes at the diagnostic, epidemiological, clinical and research level

The history of degenerate (bipartite) extremal graph problems

This paper is a survey on Extremal Graph Theory, primarily focusing on the case when one of the excluded graphs is bipartite. On one hand we give an introduction to this field and also describe many important results, methods, problems, and constructions.Comment: 97 pages, 11 figures, many problems. This is the preliminary version of our survey presented in Erdos 100. In this version 2 only a citation was complete

Population structure of anisakis simplex (nematoda) in harbor porpoises phocoena phocoena off Denmark

The population structure and habitat selection of Anisakis simplex in 35 harbor porpoises off Denmark are described. The nematodes were collected from the stomach and duodenal ampulla and were categorized as third-stage larvae, fourth-stage larvae, subadults, and adults. The porpoises harbored 8,043 specimens of A. simplex. The proportion of adults and subadults increased with infrapopulation size. The number of development stages across infrapopulations covaried significantly (Kendall's test of concordance). Concordance was higher in hosts with the highest intensities than in those with low and medium intensities. All stages occurred mainly in the forestomach, but this trend was stronger for the adults. Adult and subadult sex ratios did not depart significantly from 1:1. Our data suggested that recruitment and duration of each stage were the main factors accounting for infrapopulation structure. The preference of A. simplex for the forestomach conformed with previous studies, but the narrower distribution of adults relative to other stages might indicate a strategy to enhance mating opportunities. Information on sex ratios of A. simplex is scarce and contradictory. We suggest that the discrepancies might partly reflect differences in categorization criteria and statistical methods.Herreras Belled, Maria Victoria, [email protected] ; Balbuena Diaz-Pines, Juan Antonio, [email protected] ; Aznar Avendaño, Francisco Javier, [email protected] ; Raga Esteve, Juan Antonio, [email protected]