Extended Seismic Source Characterisation using Linear Programming Inversion in a Dual Formulation

A linear programming (LP) inversion method in a dual formulation was applied to reconstruct the kinematics of finite seismic ruptures. In a general setting, this approach can yield results from several data sets: strong ground motion, teleseismic waveforms or/and geodesic data (static deformation). The dual formulation involves the transformation of a normal solution space into an equivalent but reduced space: the dual space. The practical result of this transformation is a simpler inversion problem that is therefore faster to resolve, more stable and more robust. The developed algorithm includes a forward problem that calculates Green’s functions using a finite differences method with a 3D structure model. To evaluate the performance of this algorithm, we applied it to the reconstitution of a realistic slip distribution model from a data set synthesised using this model, i.e., the solution of the forward problem. Several other standard inversion approaches were applied to the same synthetic data for comparison

Optimized Multimode Interference Fiber Based Refractometer in A Reflective Interrogation Scheme

A fiber based refractometer in a reflective interrogation scheme is investigated and optimized. A thin gold film was deposited on the tip of a coreless fiber section, which is spliced with a single mode fiber. The coreless fiber is a multimode waveguide, and the observed effects are due to multimode interference. To investigate and optimize the structure, the multimode part of the sensor is built with 3 different lengths: 58 mm, 29 mm and 17 mm. We use a broadband light source ranging from 1475 nm to 1650 nm and we test the sensors with liquids of varying refractive indices, from 1.333 to 1.438. Our results show that for a fixed wavelength, the sensor sensitivity is independent of the multimode fiber length, but we observed a sensitivity increase of approximately 0.7 nm/RIU for a one-nanometer increase in wavelength

Enhancing the Sensitivity of SMS Fiber Sensors by the Use of High Refractive Index Coatings

This paper presents a study on the behavior of single-mode/multimode/single-mode sensors with diamond-like carbon coating of high refractive index. Spectra and response for different values of the external medium refractive index are recorded and analyzed

Diversity of metazoan parasites in Colossoma macropomum (Serrasalmidae) from the lower Jari River, a tributary of the Amazonas River in Brazil.

This study investigated the diversity of metazoan parasites in Colossoma macropomum from the Jari River, in the eastern Amazon, northern Brazil. We collected a total of 4966 parasites from 34 fishes, including monogeneans (Anacanthorus spathulatus, Mymarothecium boegeri, Notozothecium janauachensis and Linguadactyloides brinkmanni), nematodes (Spectatus spectatus larvae, Contracaecum sp. larvae andProcamallanus (Spirocamallanus) inopinatus), digeneans (Cladorchiidae metacercariae), acanthocephalans (Neoechinorhynchus buttnerae), crustaceans (Ergasilus turucuyus, Argulus multicolor, Perulernaea gamitanae and Braga patagonica), mites and leeches. The dominance was of monogenean species, found in the gills of the hosts. The parasites exhibited high aggregate dispersion, except Contracaecum sp. and P. (S.) inopinatus that showed uniform and random dispersion, respectively. The species richness of parasites varied from 1 to 9, the Brillouin diversity index from 0 to 1.52, evenness from 0 to 0.63 and the Berger-Parker dominance index from 0.39 to 1.00. Abundance of parasites was not influenced by host length, but there was significant correlation with host body weight in some cases. The parasite community was characterized by low species richness and moderate diversity, with a predominance of ectoparasites with high prevalence and abundance, as well as the presence of endoparasites in the larval stage

Scattering and Bound State Green's Functions on a Plane via so(2,1) Lie Algebra

We calculate the Green's functions for the particle-vortex system, for two anyons on a plane with and without a harmonic regulator and in a uniform magnetic field. These Green's functions which describe scattering or bound states (depending on the specific potential in each case) are obtained exactly using an algebraic method related to the SO(2,1) Lie group. From these Green's functions we obtain the corresponding wave functions and for the bound states we also find the energy spectra.Comment: 21 Latex pages. Typos corrected. Results unchanged. Version to appear in JM

Características da polpa do fruto do imbuzeiro (Spondias tuberosa Arruda) conservada em temperatura ambiente.

O objetivo deste trabalho foi produzir e testar a conservação da polpa do fruto do imbuzeiro em temperatura ambiente para produção de doce em massa

O(S) Ciúme(s) em São Bernardo, de Graciliano Ramos, e Grande Sertão: Veredas, de Guimarães Rosa

Este trabalho propõe-se a uma abordagem do ciúme, sentimento presente, entre tantas outras, em duas obras da maior relevância para a literatura nacional: São Bernardo e Grande Sertão: Veredas. Outros aspectos que aproximam os dois romances a exemplo da violência, da morte feminina, da narração autodiegética e masculina já foram comentados por muitos estudiosos de Ramos e Rosa, contudo, esse sentimento tão importante na construção de ambas as narrativas não recebeu ainda a primazia em uma análise de aproximação. Com isso, nosso intento é estabelecer essa afinidade temática não apenas elencando pontos de semelhanças, mas também comentando em que se distanciam as concepções de ciúmes tratadas nas duas obras e em que essas questões contribuem para uma melhor compreensão geral dos dois livros. Para isso, analisaremos as relações dos protagonistas Paulo Honório e Riobaldo com as mulheres que marcaram suas vidas sobretudo, mas não apenas, Madalena e Maria Deodorina (respectivamente). Comentaremos, neste esforço, as diferentes modalidades de ciúmes mencionadas nas narrativas em questão, a fim de perceber como essa temática toca também outros aspectos relevantes em ambos os casos.Para isso, noções de psicologia, como os conceitos de ciúme de Freud; ou de história, como as noções de patriarcalismo de Mary Del Priore, são incontornáveis. Ademais, outros estudiosos dos romances em questão, como Jaime Ginzburg, Antonio Candido, Roberto Schwarz e Luiz Costa Lima, também nos auxiliarão nesta trajetória. Nosso objetivo é, com tal análise, trazer nossa contribuição à leitura dos romances de Graciliano Ramos e Guimarães Rosa, propondo um novo olhar de aproximação sobre o ciúme na construção de ambos. Palavras-chave: Ciúme, São Bernardo, Grande Sertão: Veredas

Identifying Structural Variation in Haploid Microbial Genomes from Short-Read Resequencing Data Using Breseq

Mutations that alter chromosomal structure play critical roles in evolution and disease, including in the origin of new lifestyles and pathogenic traits in microbes. Large-scale rearrangements in genomes are often mediated by recombination events involving new or existing copies of mobile genetic elements, recently duplicated genes, or other repetitive sequences. Most current software programs for predicting structural variation from short-read DNA resequencing data are intended primarily for use on human genomes. They typically disregard information in reads mapping to repeat sequences, and significant post-processing and manual examination of their output is often required to rule out false-positive predictions and precisely describe mutational events. Results: We have implemented an algorithm for identifying structural variation from DNA resequencing data as part of the breseq computational pipeline for predicting mutations in haploid microbial genomes. Our method evaluates the support for new sequence junctions present in a clonal sample from split-read alignments to a reference genome, including matches to repeat sequences. Then, it uses a statistical model of read coverage evenness to accept or reject these predictions. Finally, breseq combines predictions of new junctions and deleted chromosomal regions to output biologically relevant descriptions of mutations and their effects on genes. We demonstrate the performance of breseq on simulated Escherichia coli genomes with deletions generating unique breakpoint sequences, new insertions of mobile genetic elements, and deletions mediated by mobile elements. Then, we reanalyze data from an E. coli K-12 mutation accumulation evolution experiment in which structural variation was not previously identified. Transposon insertions and large-scale chromosomal changes detected by breseq account for similar to 25% of spontaneous mutations in this strain. In all cases, we find that breseq is able to reliably predict structural variation with modest read-depth coverage of the reference genome (>40-fold). Conclusions: Using breseq to predict structural variation should be useful for studies of microbial epidemiology, experimental evolution, synthetic biology, and genetics when a reference genome for a closely related strain is available. In these cases, breseq can discover mutations that may be responsible for important or unintended changes in genomes that might otherwise go undetected.U.S. National Institutes of Health R00-GM087550U.S. National Science Foundation (NSF) DEB-0515729NSF BEACON Center for the Study of Evolution in Action DBI-0939454Cancer Prevention & Research Institute of Texas (CPRIT) RP130124University of Texas at Austin startup fundsUniversity of Texas at AustinCPRIT Cancer Research TraineeshipMolecular Bioscience