Magnetic field in atypical prominence structures: Bubble, tornado and eruption

Spectropolarimetric observations of prominences have been obtained with the THEMIS telescope during four years of coordinated campaigns. Our aim is now to understand the conditions of the cool plasma and magnetism in `atypical' prominences, namely when the measured inclination of the magnetic field departs, to some extent, from the predominantly horizontal field found in `typical' prominences. What is the role of the magnetic field in these prominence types? Are plasma dynamics more important in these cases than the magnetic support? We focus our study on three types of `atypical' prominences (tornadoes, bubbles and jet-like prominence eruptions) that have all been observed by THEMIS in the He I D_3 line, from which the Stokes parameters can be derived. The magnetic field strength, inclination and azimuth in each pixel are obtained by using the Principal Component Analysis inversion method on a model of single scattering in the presence of the Hanle effect. The magnetic field in tornadoes is found to be more or less horizontal, whereas for the eruptive prominence it is mostly vertical. We estimate a tendency towards higher values of magnetic field strength inside the bubbles than outside in the surrounding prominence. In all of the models in our database, only one magnetic field orientation is considered for each pixel. While sufficient for most of the main prominence body, this assumption appears to be oversimplified in atypical prominence structures. We should consider these observations as the result of superposition of multiple magnetic fields, possibly even with a turbulent field component.Comment: 13 pages, 9 figure

A role of biomarkers in systemic lupus erythematous: a comprehensive review

Systemic lupus erythematous (SLE) is an auto immune disease that can involve almost all body organs. Lupus erythematous may be classified in to several subtypes according to clinical features including systemic and cutaneous lupus erythematous, drug induced lupus and neonatal lupus. SLE progression includes in the immune system. Pathological manifestation of SLE are due to antibody formation and deposition of immune complexes in different organs of the body. Due to formation or disposition of immune complex in different body tissues and vessels, which may lead to complement activation and more organ damage. Other factors include genetic factors, hormonal abnormalities and environmental factors. There is a challenge in establishing a diagnosis, determining disease activity. Therefore, an important needs is a repertoire of biomarkers that can accurately with prediction, diagnosis, and disease, activity monitoring and stratifying patient. SLE can be diagnosed by using different biomarkers as anti-smith antibodies (ANAS), antibodies to double stand deoxyribonucleic acid (DNA) and level of complement components C3 C4, and CH50. More immunological biomarkers are needed to be better understanding of disease SLE. SLE is an autoimmune disease which can travel to any organ or a system i.e. biomarkers for cardiovascular involvement in SLE, biomarkers for respiratory involvement in SLE, biomarkers for lupus arthritis

Helioseismology with PICARD

PICARD is a CNES micro-satellite launched in June 2010 (Thuillier at al. 2006). Its main goal is to measure the solar shape, total and spectral irradiance during the ascending phase of the activity cycle. The SODISM telescope onboard PICARD also allows us to conduct a program for helioseismology in intensity at 535.7 nm (Corbard et al. 2008). One-minute cadence low-resolution full images are available for a so-called medium-$l$ program, and high-resolution images of the limb recorded every 2 minutes are used to study mode amplification near the limb in the perspective of g-mode search. First analyses and results from these two programs are presented here.Comment: 6 pages, 6 figures, Eclipse on the Coral Sea: Cycle 24 Ascending, GONG 2012 / LWS/SDO-5 / SOHO 27, November 12 - 16, 2012, Palm Cove, Queensland. Accepted for publication in Journal of Physics Conference Series on March 1st 201

Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots

<p>Abstract</p> <p>Background</p> <p>Knottins are small, diverse and stable proteins with important drug design potential. They can be classified in 30 families which cover a wide range of sequences (1621 sequenced), three-dimensional structures (155 solved) and functions (> 10). Inter knottin similarity lies mainly between 15% and 40% sequence identity and 1.5 to 4.5 Å backbone deviations although they all share a tightly knotted disulfide core. This important variability is likely to arise from the highly diverse loops which connect the successive knotted cysteines. The prediction of structural models for all knottin sequences would open new directions for the analysis of interaction sites and to provide a better understanding of the structural and functional organization of proteins sharing this scaffold.</p> <p>Results</p> <p>We have designed an automated modeling procedure for predicting the three-dimensionnal structure of knottins. The different steps of the homology modeling pipeline were carefully optimized relatively to a test set of knottins with known structures: template selection and alignment, extraction of structural constraints and model building, model evaluation and refinement. After optimization, the accuracy of predicted models was shown to lie between 1.50 and 1.96 Å from native structures at 50% and 10% maximum sequence identity levels, respectively. These average model deviations represent an improvement varying between 0.74 and 1.17 Å over a basic homology modeling derived from a unique template. A database of 1621 structural models for all known knottin sequences was generated and is freely accessible from our web server at <url>http://knottin.cbs.cnrs.fr</url>. Models can also be interactively constructed from any knottin sequence using the structure prediction module Knoter1D3D available from our protein analysis toolkit PAT at <url>http://pat.cbs.cnrs.fr</url>.</p> <p>Conclusions</p> <p>This work explores different directions for a systematic homology modeling of a diverse family of protein sequences. In particular, we have shown that the accuracy of the models constructed at a low level of sequence identity can be improved by 1) a careful optimization of the modeling procedure, 2) the combination of multiple structural templates and 3) the use of conserved structural features as modeling restraints.</p

Replication for Web Hosting Systems

Replication is a well-known technique to improve the accessibility of Web sites. It generally offers reduced client latencies and increases a site’s availability. However, applying replication techniques is not trivial, and various Content Delivery Networks (CDNs) have been created to facilitate replication for digital content providers. Th

The magnetism of the solar interior for a complete MHD solar vision

The solar magnetism is no more considered as a purely superficial phenomenon. The SoHO community has shown that the length of the solar cycle depends on the transition region between radiation and convection. Nevertheless, the internal solar (stellar) magnetism stays poorly known. Starting in 2008, the American instrument HMI/SDO and the European microsatellite PICARD will enrich our view of the Sun-Earth relationship. Thus obtaining a complete MHD solar picture is a clear objective for the next decades and it requires complementary observations of the dynamics of the radiative zone. For that ambitious goal, space prototypes are being developed to improve gravity mode detection. The Sun is unique to progress on the topology of deep internal magnetic fields and to understand the complex mechanisms which provoke photospheric and coronal magnetic changes and possible longer cycles important for human life. We propose the following roadmap in Europe to contribute to this "impressive" revolution in Astronomy and in our Sun-Earth relationship: SoHO (1995-2007), PICARD (2008-2010), DynaMICS (2009-2017) in parallel to SDO (2008-2017) then a world-class mission located at the L1 orbit or above the solar poles.Comment: 10 pages, 8 figures, will appear in the proceedings of 2005 ESLAB symposium 19-21 April 200

Influence of Low-Degree High-Order p-Mode Splittings on the Solar Rotation Profile

The solar rotation profile is well constrained down to about 0.25 R thanks to the study of acoustic modes. Since the radius of the inner turning point of a resonant acoustic mode is inversely proportional to the ratio of its frequency to its degree, only the low-degree p modes reach the core. The higher the order of these modes, the deeper they penetrate into the Sun and thus they carry more diagnostic information on the inner regions. Unfortunately, the estimates of frequency splittings at high frequency from Sun-as-a-star measurements have higher observational errors due to mode blending, resulting in weaker constraints on the rotation profile in the inner core. Therefore inversions for the solar internal rotation use only modes below 2.4 mHz for l < 4. In the work presented here, we used an 11.5 year-long time series to compute the rotational frequency splittings for modes l < 4 using velocities measured with the GOLF instrument. We carried out a theoretical study of the influence of the low-degree modes in the region 2 to 3.5 mHz on the inferred rotation profile as a function of their error bars.Comment: Accepted for publication in Solar Physics. 17 Pages, 9 figure

Interrogating and Predicting Tolerated Sequence Diversity in Protein Folds: Application to E. elaterium Trypsin Inhibitor-II Cystine-Knot Miniprotein

Cystine-knot miniproteins (knottins) are promising molecular scaffolds for protein engineering applications. Members of the knottin family have multiple loops capable of displaying conformationally constrained polypeptides for molecular recognition. While previous studies have illustrated the potential of engineering knottins with modified loop sequences, a thorough exploration into the tolerated loop lengths and sequence space of a knottin scaffold has not been performed. In this work, we used the Ecballium elaterium trypsin inhibitor II (EETI) as a model member of the knottin family and constructed libraries of EETI loop-substituted variants with diversity in both amino acid sequence and loop length. Using yeast surface display, we isolated properly folded EETI loop-substituted clones and applied sequence analysis tools to assess the tolerated diversity of both amino acid sequence and loop length. In addition, we used covariance analysis to study the relationships between individual positions in the substituted loops, based on the expectation that correlated amino acid substitutions will occur between interacting residue pairs. We then used the results of our sequence and covariance analyses to successfully predict loop sequences that facilitated proper folding of the knottin when substituted into EETI loop 3. The sequence trends we observed in properly folded EETI loop-substituted clones will be useful for guiding future protein engineering efforts with this knottin scaffold. Furthermore, our findings demonstrate that the combination of directed evolution with sequence and covariance analyses can be a powerful tool for rational protein engineering