DynTrix:A Hybrid Representation for Dynamic Graphs

Hybrid graph representations combine two or more network visualization techniques in a unique drawing, simultaneously leveraging their strong traits. Since their introduction in the early 2000s, hybrid representations have gained significant research interest, with the introduction of new techniques and comparative user studies. However, all this research has not considered dynamic graphs. In this paper, we investigate hybrid graph representations in a dynamic network context and present DynTrix. Our system uses the NodeTrix representation as a basis, but the research extends this representation to the dynamic network domain. DynTrix supports automatic or manually created clusters/matrices across time. Drawing stability is implemented through aggregation and users can rearrange the nodes/matrix positions and pin them. DynTrix visualizes the temporal dynamics of the network through a combination of movement and element highlighting. We also introduce the concept of volatility, that allows the identification of actors in the network that are the most volatile. Matrices can be ordered such that stable cores gravitate towards the centre of the matrix. We integrate this technique in a visual analytics application for the exploration of offline dynamic networks and evaluate our system through case studies and qualitative expert interviews. Experts agree on the capabilities of the system, noting its potential for the analysis of dynamic networks through hybrid representations.</p

Testing the theory of immune selection in cancers that break the rules of transplantation

Modification of cancer cells likely to reduce their immunogenicity, including loss or down-regulation of MHC molecules, is now well documented and has become the main support for the concept of immune surveillance. The evidence that these modifications, in fact, result from selection by the immune system is less clear, since the possibility that they may result from reorganized metabolism associated with proliferation or from cell de-differentiation remains. Here, we (a) survey old and new transplantation experiments that test the possibility of selection and (b) survey how transmissible tumours of dogs and Tasmanian devils provide naturally evolved tests of immune surveillance

Drug discovery for Chagas disease should consider Trypanosoma cruzi strain diversity.

This opinion piece presents an approach to standardisation of an important aspect of Chagas disease drug discovery and development: selecting Trypanosoma cruzi strains for in vitro screening. We discuss the rationale for strain selection representing T. cruzi diversity and provide recommendations on the preferred parasite stage for drug discovery, T. cruzi discrete typing units to include in the panel of strains and the number of strains/clones for primary screens and lead compounds. We also consider experimental approaches for in vitro drug assays. The Figure illustrates the current Chagas disease drug-discovery and development landscape

The realisation of voicing assimilation rules in Hungarian spontaneous and read speech: Case studies

Hungarian represents a particularly fruitful ground for exploring voicing assimilation. Although this topic has been extensively analysed, a contradiction can be observed between most phonological descriptions and acoustic-phonetics-based studies of voicing assimilation. Theoretical works suggest that this process in Hungarian speech is a purely regressive, obligatory and categorical phenomenon, but in practice divergent realisations can be observed. In the present paper three case studies of voicing assimilation are performed. CCC clusters, CC clusters interrupted by pause and partially voiced realisations were analysed. The results showed that in the first two cases the speech planning process and the degree of self-monitoring were the most influential factors, while the various concomitances of voicing and devoicing arising due to aerodynamic and articulatory reasons resulted in partially voiced realisations. The variability of the data confirms the hypothesis that Hungarian voicing assimilation is a gradient and sometimes only partly regressive process. Even if it operates mainly obligatorily, several factors can override it

Strategies to facilitate integrated care for people with alcohol and other drug problems: a systematic review

Background: There is a growing body of research highlighting the potential benefits of integrated care as a way of addressing the needs of people with alcohol and other drug (AOD) problems, given the broad range of other issues clients often experience. However, there has been little academic attention on the strategies that treatment systems, agencies and clinicians could implement to facilitate integrated care. Methods: We synthesised the existing evidence on strategies to improve integrated care in an AOD treatment context by conducting a systematic review of the literature. We searched major academic databases for peer-reviewed articles that evaluated strategies that contribute to integrated care in an AOD context between 1990 and 2014. Over 2600 articles were identified, of which 14 met the study inclusion criteria of reporting on an empirical study to evaluate the implementation of integrated care strategies. The types of strategies utilised in included articles were then synthesised. Results: We identified a number of interconnected strategies at the funding, organisational, service delivery and clinical levels. Ensuring that integrated care is included within service specifications of commissioning bodies and is adequately funded was found to be critical in effective integration. Cultivating positive inter-agency relationships underpinned and enabled the implementation of most strategies identified. Staff training in identifying and responding to needs beyond clinicians' primary area of expertise was considered important at a service level. However, some studies highlight the need to move beyond discrete training events and towards longer term coaching-type activities focussed on implementation and capacity building. Sharing of client information (subject to informed consent) was critical for most integrated care strategies. Case-management was found to be a particularly good approach to responding to the needs of clients with multiple and complex needs. At the clinical level, screening in areas beyond a clinician's primary area of practice was a common strategy for facilitating referral and integrated care, as was joint care planning. Conclusion: Despite considerable limitations and gaps in the literature in terms of the evaluation of integrated care strategies, particularly between AOD services, our review highlights several strategies that could be useful at multiple levels. Given the interconnectedness of integrated care strategies identified, implementation of multi-level strategies rather than single strategies is likely to be preferable

On biosignatures for Mars

In this work, we address the difficulty of reliably identifying traces of life on Mars. Several independent lines of evidence are required to build a compelling body of proof. In particular, we underline the importance of correctly interpreting the geological and mineralogical context of the sites to be explored for the presence of biosignatures. We use as examples to illustrate this, ALH84001 (where knowledge of the geological context was very limited) and other terrestrial deposits, for which this could be properly established. We also discuss promising locations and formations to be explored by ongoing and future rover missions, including Oxia Planum, which, dated at 4.0 Ga, is the most ancient Mars location targeted for investigation yet

Differential Effects of Attention-, Compassion-, and Socio-Cognitively Based Mental Practices on Self-Reports of Mindfulness and Compassion

Research on the effects of mindfulness- and compassion-based interventions is flourishing along with self-report scales to assess facets of these broad concepts. However, debates remain as to which mental practices are most appropriate to develop the attentional, cognitive, and socio-affective facets of mindfulness and compassion. One crucial question is whether present-moment, attention-focused mindfulness practices are sufficient to induce a cascade of changes across the different proposed facets of mindfulness, including nonjudgmental acceptance, as well as compassion or whether explicit socio-affective training is required. Here, we address these questions in the context of a 9-month longitudinal study (the ReSource Project) by examining the differential effects of three different 3-month mental training modules on subscales of mindfulness and compassion questionnaires. The “Presence” module, which aimed at cultivating present-moment-focused attention and body awareness, led to increases in the observing, nonreacting, and presence subscales, but not to increases in acceptance or nonjudging. These latter facets benefitted from specific cultivation through the socio-cognitive “Perspective” module and socio-affective, compassion-based “Affect” module, respectively. These modules also led to further increases in scores on the subscales affected by the Presence module. Moreover, scores on the compassion scales were uniquely influenced by the Affect module. Thus, whereas a present-moment attention-focused training, as implemented in many mindfulness-based programs, was indeed able to increase attentional facets of mindfulness, only socio-cognitive and compassion-based practices led to broad changes in ethical-motivational qualities like a nonjudgmental attitude, compassion, and self-compassion

iMARS Phase 2

The file attached is the Published/publisher’s pdf version of the articl

Variability in the articulation and perception of a word

The words making up a speaker’s mental lexicon may be stored as abstract phonological representations or else they may be stored as detailed acoustic-phonetic representations. The speaker’s articulatory gestures intended to represent a word show relatively high variability in spontaneous speech. The aim of this paper is to explore the acoustic-phonetic patterns of the Hungarian word akkor ‘then, at that time’. Ten speakers’ recorded spontaneous speech with a total duration of 255 minutes and containing 286 occurrences of akkor were submitted to analysis. Durational and frequency patterns were measured by means of the Praat software. The results obtained show higher variability both within and across speakers than it had been expected. Both the durations of the words and those of the speech sounds, as well as the vowel formants, turned out to significantly differ across speakers. In addition, the results showed considerable within-speaker variation as well. The correspondence between variability in the objective acoustic-phonetic data and the flexibility and adaptive nature of the mental representation of a word will be discussed.For the perception experiments, two speakers of the previous experiment were selected whose 48 words were then used as speech material. The listeners had to judge the quality of the words they heard using a five-point scale. The results confirmed that the listeners used diverse strategies and representations depending on the acoustic-phonetic parameters of the series of occurrences of akkor