Deep silicon maxima in the stratified oligotrophic Mediterranean Sea

The silicon biogeochemical cycle has been studied in the Mediterranean Sea during late summer/early autumn 1999 and summer 2008. The distribution of nutrients, particulate carbon and silicon, fucoxanthin (Fuco), and total chlorophyll-<i>a</i> (TChl-<i>a</i>) were investigated along an eastward gradient of oligotrophy during two cruises (PROSOPE and BOUM) encompassing the entire Mediterranean Sea during the stratified period. At both seasons, surface waters were depleted in nutrients and the nutriclines gradually deepened towards the East, the phosphacline being the deepest in the easternmost Levantine basin. Following the nutriclines, parallel deep maxima of biogenic silica (DSM), fucoxanthin (DFM) and TChl-<i>a</i> (DCM) were evidenced during both seasons with maximal concentrations of 0.45 μmol L<sup>−1</sup> for BSi, 0.26 μg L<sup>−1</sup> for Fuco, and 1.70 μg L<sup>−1</sup> for TChl-<i>a</i>, all measured during summer. Contrary to the DCM which was a persistent feature in the Mediterranean Sea, the DSM and DFMs were observed in discrete areas of the Alboran Sea, the Algero-Provencal basin, the Ionian sea and the Levantine basin, indicating that diatoms were able to grow at depth and dominate the DCM under specific conditions. Diatom assemblages were dominated by <i>Chaetoceros</i> spp., <i>Leptocylindrus</i> spp., <i>Pseudonitzschia</i> spp. and the association between large centric diatoms (<i>Hemiaulus hauckii</i> and <i>Rhizosolenia styliformis</i>) and the cyanobacterium <i>Richelia intracellularis</i> was observed at nearly all sites. The diatom's ability to grow at depth is commonly observed in other oligotrophic regions and could play a major role in ecosystem productivity and carbon export to depth. Contrary to the common view that Si and siliceous phytoplankton are not major components of the Mediterranean biogeochemistry, we suggest here that diatoms, by persisting at depth during the stratified period, could contribute to a large part of the marine primary production as observed in other oligotrophic areas

Silicon cycle in the tropical South Pacific: contribution to the global Si cycle and evidence for an active pico-sized siliceous plankton

This article presents data regarding the Si biogeochemical cycle during two oceanographic cruises conducted in the tropical South Pacific (BIOSOPE and OUTPACE cruises) in 2005 and 2015. It involves the first Si stock measurements in this understudied region, encompassing various oceanic systems from New Caledonia to the Chilean upwelling between 8 and 34°&thinsp;S. Some of the lowest levels of biogenic silica standing stocks ever measured were found in this area, notably in the southern Pacific gyre, where Chlorophyll a concentrations are the most depleted worldwide. Integrated biogenic silica stocks are as low as 1.08±0.95&thinsp;mmol&thinsp;m−2 and are the lowest stocks measured in the South Pacific. Size-fractionated biogenic silica concentrations revealed a non-negligible contribution of the pico-sized fraction (&lt;2–3&thinsp;µm) to biogenic silica standing stocks, representing 26% ± 12% of total biogenic silica during the OUTPACE cruise and 11% ± 9% during the BIOSOPE cruise. These results indicate significant accumulation in this size class, which was undocumented for 2005, but has since then been related to Si uptake by Synechococcus cells. Si uptake measurements carried out during BIOSOPE confirmed biological Si uptake by this size fraction. We further present diatoms community structure associated with the stock measurements for a global overview of the Si cycle in the tropical South Pacific.</p

Multi-Particle Collision Dynamics -- a Particle-Based Mesoscale Simulation Approach to the Hydrodynamics of Complex Fluids

In this review, we describe and analyze a mesoscale simulation method for fluid flow, which was introduced by Malevanets and Kapral in 1999, and is now called multi-particle collision dynamics (MPC) or stochastic rotation dynamics (SRD). The method consists of alternating streaming and collision steps in an ensemble of point particles. The multi-particle collisions are performed by grouping particles in collision cells, and mass, momentum, and energy are locally conserved. This simulation technique captures both full hydrodynamic interactions and thermal fluctuations. The first part of the review begins with a description of several widely used MPC algorithms and then discusses important features of the original SRD algorithm and frequently used variations. Two complementary approaches for deriving the hydrodynamic equations and evaluating the transport coefficients are reviewed. It is then shown how MPC algorithms can be generalized to model non-ideal fluids, and binary mixtures with a consolute point. The importance of angular-momentum conservation for systems like phase-separated liquids with different viscosities is discussed. The second part of the review describes a number of recent applications of MPC algorithms to study colloid and polymer dynamics, the behavior of vesicles and cells in hydrodynamic flows, and the dynamics of viscoelastic fluids

Metabolic compartmentalization in the human cortex and hippocampus: evidence for a cell- and region-specific localization of lactate dehydrogenase 5 and pyruvate dehydrogenase

BACKGROUND: For a long time now, glucose has been thought to be the main, if not the sole substrate for brain energy metabolism. Recent data nevertheless suggest that other molecules, such as monocarboxylates (lactate and pyruvate mainly) could be suitable substrates. Although monocarboxylates poorly cross the blood brain barrier (BBB), such substrates could replace glucose if produced locally.The two key enzymatiques systems required for the production of these monocarboxylates are lactate dehydrogenase (LDH; EC1.1.1.27) that catalyses the interconversion of lactate and pyruvate and the pyruvate dehydrogenase complex that irreversibly funnels pyruvate towards the mitochondrial TCA and oxydative phosphorylation. RESULTS: In this article, we show, with monoclonal antibodies applied to post-mortem human brain tissues, that the typically glycolytic isoenzyme of lactate dehydrogenase (LDH-5; also called LDHA or LDHM) is selectively present in astrocytes, and not in neurons, whereas pyruvate dehydrogenase (PDH) is mainly detected in neurons and barely in astrocytes. At the regional level, the distribution of the LDH-5 immunoreactive astrocytes is laminar and corresponds to regions of maximal 2-deoxyglucose uptake in the occipital cortex and hippocampus. In hippocampus, we observed that the distribution of the oxidative enzyme PDH was enriched in the neurons of the stratum pyramidale and stratum granulosum of CA1 through CA4, whereas the glycolytic enzyme LDH-5 was enriched in astrocytes of the stratum moleculare, the alveus and the white matter, revealing not only cellular, but also regional, selective distributions. The fact that LDH-5 immunoreactivity was high in astrocytes and occurred in regions where the highest uptake of 2-deoxyglucose was observed suggests that glucose uptake followed by lactate production may principally occur in these regions. CONCLUSION: These observations reveal a metabolic segregation, not only at the cellular but also at the regional level, that support the notion of metabolic compartmentalization between astrocytes and neurons, whereby lactate produced by astrocytes could be oxidized by neurons

Export fluxes in a naturally iron-fertilzed area of the Southern Ocean - Part 2: Importance of diatom resting spores and faecal pellets for export

The biological composition of the material exported to a moored sediment trap located under the winter mixed layer of the naturally fertilized Kerguelen Plateau in the Southern Ocean was studied over an annual cycle. Despite iron availability in spring, the annual particulate organic carbon (POC) export (98.2 mmol m−2) at 289 m was low, but annual biogenic silica export was significant (114 mmol m−2). This feature was related to the abundance of empty diatom cells and the ratio of full to empty cells exerted a first-order control in BSi : POC export stoichiometry of the biological pump. Chaetoceros Hyalochaete spp. and Thalassiosira antarctica resting spores were responsible for more than 60% of the annual POC flux that occurred during two very short export events of 80%). The seasonal progression of faecal pellet types revealed a clear transition from small spherical shapes (small copepods) in spring, to larger cylindrical and ellipsoid shapes in summer (euphausiids and large copepods) and finally to large tabular shapes (salps) in autumn and winter. We propose in this high-biomass, low-export (HBLE) environment that small but highly silicified and fast-sinking resting spores are able to bypass the intense grazing pressure and efficient carbon transfer to higher trophic levels that are responsible for the low fluxes observed the during the remainder of the year. More generally our study also provides a statistical framework linking the ecological succession of diatom and zooplankton communities to the seasonality of carbon and silicon export within an iron-fertilized bloom region in the Southern Ocean

Silica fluxes in the northeast Atlantic frontal zone of Mode Water formation (38 degrees-45 degrees N, 16 degrees-22 degrees W) in 2001-2002

International audience[ 1] The biogenic (BSi) and lithogenic (LSi) silica export fluxes were investigated in the northeast Atlantic (38 degrees - 45 degrees N, 16 degrees - 22 degrees W) as part of the Programme Ocean Multidisciplinaire Meso Echelle (POMME) program in 2001 - 2002. They were measured at four stations located on both sides of a frontal zone (40 degrees - 42 degrees N) by means of permanent moorings of sediment traps deployed at 400 and 1000 m depth. Averaged over the area, the annual BSi fluxes ( corrected from Th-230 trapping efficiencies) ranged between 0.240 mmol m(-2) d(-1) at 400 m to 0.316 mmol m(-2) d(-1) at 1000 m. The bulk annual BSi fluxes are comparable to bulk BSi export fluxes recorded for oligotrophic areas. The annual export flux of LSi ( range 0.029 mmol m(-2) d(-1) at 400 m to 0.054 mmol m(-2) d(-1) at 1000 m) was lower than BSi and accounted for 10% of the total silica export flux. Results show a strong coupling between the two siliceous particulate fractions, which is interpreted as reflecting LSi scavenging by BSi and limitation of BSi production in surface water by lithogenic ( trace metals) inputs. BSi export was maximum at the beginning of the productive season during the spring bloom. However, annual BSi export fluxes in 2001 were quite higher at 400 m in the southern area ( e. g., 0.249 - 0.288 at the southeast station versus 0.211 mmol BSi m(-2) d(-1) at the northeast station) contradictory to the classical south-north surface production increase. We suggest an advective lateral transport within the upper 400 m of siliceous particles from the northern, more productive area to the southern region

Impact of iron on silicon utilization by diatoms in the Southern Ocean: A case study of Si/N cycle decoupling in a naturally iron-enriched area

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Late summer diatom biomass and community structure on and around the naturally iron-fertilised Kerguelen Plateau in the Southern Ocean

Analysis of the diatom assemblage during the recent KErguelen: compared study of Ocean and Plateau in Surface water (KEOPS) mission (January–February 2005), enabled a modern description of the summer bloom community over the Kerguelen Plateau in the context of the community in the surrounding high-nutrient, low-chlorophyll (HNLC) Southern Ocean waters. Net samples revealed biogeographic partitioning of certain species. Comparison of net samples with CTD-Niskin bottle samples revealed a considerable underestimation of large diatom species in the water samples. We analysed four plateau stations and one off-plateau HNLC station for individual species abundances and biomass contributions down to 150 m. The stations can be divided into two groups based on species composition and total biomass contributions, equating to high (45.6–99.4 μg C L−1) and low (2.5–25.7 μg C L−1) biomass regimes. Individual species abundances were not related to the major species biomass contributions. Repeat analyses at the bloom station, A3, and the off-plateau HNLC station, C11, revealed evolution from a Chaetoceros subgenus Hyalochaete bloom to a remnant Eucampia antarctica assemblage. In contrast the HNLC station, C11, remained dominated by Fragilariopsis pseudonana and F. kerguelensis throughout the survey. Comparison to artificial iron experiments reveals differences in the responses of Pseudo-nitzschia spp. and F. kerguelensis, which may arise in part from differences in macro-nutrient supply, in particular silicic acid availability, as well as from seasonal succession

Diatoms preserved in surface sediments of the northeastern Kerguelen Plateau

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Vloga slovenske policije pri zmanjševanju ilegalnih migracij v Republiki Sloveniji

The chemical factors (inorganic nitrogen, phosphate, silicic acid) that potentially or actually control primary production were determined for the Bay of Brest, France, a macrotidal ecosystem submitted to high-nitrate-loaded freshwater inputs (winter nitrate freshwater concentrations >700 mu M, Si:N molar ratio as low as 0.2, i.e. among the lowest ever published). Intensive data collection and observations were carried out from February 1993 to March 1994 to determine the variations of physical [salinity, temperature, photosynthetically active radiation (PAR), freshwater discharges] and chemical (oxygen and nutrients) parameters and their impacts on the phytoplankton cycle (fluorescence, pigments, primary production). With insufficient PAR the winter stocks of nutrients were almost nonutilized and the nitrate excess was exported to the adjacent ocean, due to rapid tidal exchange. By early April, a diatom-dominated spring bloom developed (chlorophyll a maximum = 7.7 mu g l(-1); primary production maximum = 2.34 g C m(-2) d(-1)) under high initial nutrient concentrations. Silicic acid was rapidly exhausted over the whole water column; it is inferred to be the primary limiting factor responsible for the collapse of the spring bloom by mid-May. Successive phytoplankton developments characterized the period of secondary blooms during summer and fall (successive surface chlorophyll a maxima = 3.5, 1.6, 1.8 and 1.0 mu g l(-1); primary production = 1.24, 1.18 and 0.35 g C m(-2) d(-1)). Those secondary blooms developed under lower nutrient concentrations, mostly originating from nutrient recycling. Until August, Si and P most likely limited primary production, whereas the last stage of the productive period in September seemed to be N limited instead, this being a period of total nitrate depletion in almost the whole water column. Si limitation of spring blooms has become a common feature in coastal ecosystems that receive freshwater inputs with Si:N molar ratios <1. The peculiarity of Si Limitation in the Bay of Brest is its extension through the summer period