Plant growth-promoting activity and quorum quenchingmediated biocontrol of bacterial phytopathogens by Pseudomonas segetis strain P6

This research was funded by grants from the Spanish Ministry of the Economy and Competitiveness (AGL2015-68806-R) and the Ramon y Cajal program (RYC-2014-15532). The authors wish to thank Michael O'Shea for proofreading the manuscript and Juan Sanjuan Pinilla's research group (EEZ-CSIC) for kindly supplying the Pseudomonas syringae pv. tomato strain DC3000.Given the major threat of phytopathogenic bacteria to food production and ecosystem stability worldwide, novel alternatives to conventional chemicals-based agricultural practices are needed to combat these bacteria. The objective of this study is to evaluate the ability of Pseudomonas segetis strain P6, which was isolated from the Salicornia europaea rhizosphere, to act as a potential biocontrol agent given its plant growth-promoting (PGP) and quorum quenching (QQ) activities. Seed biopriming and in vivo assays of tomato plants inoculated with strain P6 resulted in an increase in seedling height and weight. We detected QQ activity, involving enzymatic degradation of signal molecules in quorum sensing communication systems, against a broad range of N-acylhomoserine lactones (AHLs). HPLC-MRM data and phylogenetic analysis indicated that the QQ enzyme was an acylase. The QQ activity of strain P6 reduced soft rot symptoms caused by Dickeya solani, Pectobacterium atrosepticum and P. carotovorum on potato and carrot. In vivo assays showed that the PGP and QQ activities of strain P6 protect tomato plants against Pseudomonas syringae pv. tomato, indicating that strain P6 could have biotechnological applications. To our knowledge, this is the first report to show PGP and QQ activities in an indigenous Pseudomonas strain from Salicornia plants.Spanish Ministry of the Economy and Competitiveness AGL2015-68806-RSpanish Government RYC-2014-1553

Towards an increase of flash flood geomorphic effects due to gravel mining and ground subsidence in Nogalte stream (Murcia, SE Spain)

Transition from endorheic alluvial fan environments to well-channelized fluvial systems in natural conditions may occur in response to base-level fluctuations. However, human-induced changes in semi-arid regions can also be responsible for similar unforeseen modifications. Our results confirm that in-channel gravel mining and aquifer overexploitation over the last 50 years in the case study area have changed the natural stability of the Nogalte stream and, as a result, its geomorphic parameters including channel depth and longitudinal profile have begun to adapt to the new situation. Using interferometric synthetic aperture radar (InSAR) data we obtain maximum values for ground subsidence in the Upper Guadalentín Basin of  ∼ 10 cm yr−1 for the period 2003–2010. In this context of a lowered base level, the river is changing its natural flood model to a more powerful one. A comparison of the 1973 flood event, the most dramatic flood event ever recorded in the area, with the 2012 event, where there was a similar discharge but a sediment load deficit, reveals greater changes and a new flooding pattern and extension. In-channel gravel mining may be responsible for significant local changes in channel incision and profile. This, together with the collateral effects of aquifer overexploitation, can favour increased river velocity and stream power, which intensify the consequences of the flooding. The results obtained here clearly demonstrate an existing transition from the former alluvial pattern to a confined fluvial trend, which may become more pronounced in the future due to the time lag between the drop in aquifer level and ground subsidence, and introduce a new scenario to be taken into consideration in future natural hazard planning in this area.s. This research was partially funded by projects CGL 2011-23857, ESP2013-47780-C2-2-R and CGL2013-47412-C2-1-P (Spanish Ministry of Economy and Competitiveness).Peer reviewe

Mapping vulnerable urban areas affected by slow-moving landslides using Sentinel-1InSAR data

Landslides are widespread natural hazards that generate considerable damage and economic losses worldwide. Detecting terrain movements caused by these phenomena and characterizing affected urban areas is critical to reduce their impact. Here we present a fast and simple methodology to create maps of vulnerable buildings affected by slow-moving landslides, based on two parameters: (1) the deformation rate associated to each building, measured from Sentinel-1 SAR data, and (2) the building damage generated by the landslide movement and recorded during a field campaign. We apply this method to Arcos de la Frontera, a monumental town in South Spain affected by a slow-moving landslide that has caused severe damage to buildings, forcing the evacuation of some of them. Our results show that maximum deformation rates of 4 cm/year in the line-of-sight (LOS) of the satellite, affects La Verbena, a newly-developed area, and displacements are mostly horizontal, as expected for a planar-landslide. Our building damage assessment reveals that most of the building blocks in La Verbena present moderate to severe damages. According to our vulnerability scale, 93% of the building blocks analysed present high vulnerability and, thus, should be the focus of more in-depth local studies to evaluate the serviceability of buildings, prior to adopting the necessary mitigation measures to reduce or cope with the negative consequences of this landslide. This methodology can be applied to slow-moving landslides worldwide thanks to the global availability of Sentinel-1 SAR data.Postprint (published version

Andean structural control on interseismic coupling in the North Chile subduction zone

Segmentation can influence the extent of earthquake rupture and event magnitude: large megathrust earthquakes result from total rupture of relatively continuous segments of the subduction interface. Segmentation is attributed to variations in the frictional properties of the seismogenic zone or to topographic features on the down-going plate. Structures in the overriding plate may also influence segmentation but their importance has been dismissed. Here, we investigate the links between interface segmentation at the North Chile seismic gap and a crustal-scale fault structure in the overriding plate that forms a coastal scarp of about 1 km in height. We use satellite interferometric synthetic aperture radar (InSAR) and Global Positioning System (GPS) data to measure interseismic surface deformation between 2003 and 2009 and compare the deformation with rupture extent during well-documented earthquakes. From these data we infer the degree of coupling and segmentation at depth. We find that along a 500-km-long segment, the base of the strongly coupled seismogenic zone correlates with the line of the surface coastal scarp and follows the outline of the Mejillones Peninsula. This correlation implies that large-scale structures in the overriding plate can influence the frictional properties of the seismogenic zone at depth. We therefore suggest that the occurrence of megathrust earthquakes in northern Chile is controlled by the surface structures that build Andean topography

Aphicidal Activity of Surfactants Produced by Bacillus atrophaeus L193

The biosurfactants produced by Bacillus atrophaeus L193 was examined by their use in the control of the aphid Rhopalosiphum padi in order to suggest a friendly alternative to chemical pesticides. A screening of different culture media demonstrated the highest biosurfactant production by L193 in TSB supplemented with colloidal chitin. Surfactants, which are produced in large quantities (2.04 g/L), reduce surface tension to 33 mN/m. Electrospray Q-TOFS MS analysis demonstrated that lipopeptides, such as surfactins, fengycins, bacillomycins and iturins, are the predominant metabolites present in biosurfactants produced by strain L193. Treatment with L193 surfactants led to an aphid mortality rate of 59.8% within 24 h. Microscopy analysis showed that these compounds caused insect death by affecting cuticle membranes. An evaluation of aphid feeding activity also demonstrated that aphid feeding capacity is affected by treatment with surfactants. Moreover, microbial cultures of strain L193 and their supernatants also showed high levels of activity against R. padi, which is probably due to the presence of surfactants and hydrolytic enzymes such as proteases and glucanases. This study demonstrates that B. atrophaeus L193 is an effective treatment for plants affected by aphids

Ultrastructural damage of Loligo vulgaris and Illex coindetii statocysts after low frequency sound exposure

There is a considerable lack of information concerning marine invertebrate sensitivity to sound exposure. However, recent findings on cuttlefish and octopi showed that exposure to artificial noise had a direct consequence on the functionality and physiology of the statocysts, sensory organs, which are responsible for their equilibrium and movements in the water column. Owing to a lack of available data on deep diving cephalopod species, we conducted a noise exposure comparative experiment on one Mediterranean squid, Illex coindetii, and on the European squid Loligo vulgaris. Scanning electron microscopy (SEM) revealed similar injuries in the inner structure of the statocysts, as those found in cuttlefish and octopi. In addition to the ultrastructural description of the lesions, we publish here the first images of the crista-cupula system and inner statocyst cavity of I. coindetii

A quasi-elastic aquifer deformational behavior: Madrid aquifer case study

The purpose of this paper is to analyze the quasi-elastic deformational behavior that has been induced by groundwater withdrawal of the Tertiary detrital aquifer of Madrid (Spain). The spatial and temporal evolution of ground surface displacement was estimated by processing two datasets of radar satellite images (SAR) using Persistent Scatterer Interferometry (PSI). The first SAR dataset was acquired between April 1992 and November 2000 by ERS-1 and ERS-2 satellites, and the second one by the ENVISAT satellite between August 2002 and September 2010. The spatial distribution of PSI measurements reveals that the magnitude of the displacement increases gradually towards the center of the well field area, where approximately 80 mm of maximum cumulated displacement is registered. The correlation analysis made between displacement and piezometric time series provides a correlation coefficient greater than 85% for all the wells. The elastic and inelastic components of measured displacements were separated, observing that the elastic component is, on average, more than 4 times the inelastic component for the studied period. Moreover, the hysteresis loops on the stress–strain plots indicate that the response is in the elastic range. These results demonstrate the quasi-elastic behavior of the aquifer. During the aquifer recovery phase ground surface uplift almost recovers from the subsidence experienced during the preceding extraction phase. Taking into account this unique aquifer system, a one dimensional elastic model was calibrated in the period 1997–2000. Subsequently, the model was used to predict the ground surface movements during the period 1992–2010. Modeled displacements were validated with PSI displacement measurements, exhibiting an error of 13% on average, related with the inelastic component of deformation occurring as a long-term trend in low permeability fine-grained units. This result further demonstrates the quasi-elastic deformational behavior of this unique aquifer system.This work was developed during Pablo Ezquerro research stay within the Geohazards InSAR laboratory and Modeling group of the Instituto Geológico y Minero de España in the framework of DORIS project (Ground Deformation Risk Scenarios: an Advanced Assessment Service) funded by the EC-GMES-FP7 initiative (Grant Agreement nº 242212). This work has been also supported by the Spanish Ministry of Science and Research (MICINN) under project TEC2011-28201-C02-02 and EU FEDER. Additional funding was obtained from Spanish Research Program through the project ESP2013-47780-C2-2-R

Identification of an interferon-stimulated gene, isg15, involved in host immune defense against viral infections in gilthead seabream (Sparus aurata L.)

Interferons (IFNs) play a key role in the innate immunity of vertebrates against viral infections by inducing hundreds of IFN-stimulated genes (ISGs), such as isg15. Isg15 is an ubiquitin-like protein, which can conjugate cellular and viral proteins in a process called ISGylation, although it can also act as a cytokine-like protein. Gilthead seabream (Sparus aurata L.) is an important asymptomatic carrier of viral haemorrhagic septicaemia virus (VHSV) and nodavirus, representing a threat to other co-cultivated susceptible species. In order to better understand virus-host interactions in this fish species, this study addresses the identification and molecular characterization of seabream isg15 (sb-isg15). In addition, the modulation of transcript levels of sb-isg15 was analysed in SAF-1 cells and seabream acidophilic granulocytes (AGs) stimulated in vitro with different pathogenassociated molecular patterns (PAMPs) or inoculated with VHSV and striped jack nervous necrosis virus (SJNNV). The full-length cDNA of sb-isg15 gene, encoding a predicted protein of 155 amino acids, was identified and seen to share the same characteristics as other fish and mammalian isg15 genes. Here we report the clear induction of sb-isg15 transcript levels in SAF-1 cells and AGs stimulated with toll-like receptor (TLR) ligands, such as polyinosinic:polycytidylic acid (poly I:C) or genomic DNA from Vibrio anguillarum (VaDNA), respectively. Furthermore, VHSV and SJNNV inoculation induced a significant degree of sb-isg15 transcription in SAF-1 cells and AGs. However, the relative levels of viral RNA transcription showed that SJNNV replication seems to be more efficient than VHSV in both in vitro systems. Interestingly, sb-isg15 transcript induction elicited by VaDNA was reduced in VHSV- and SJNNV-inoculated AGs, suggesting an interference prompted by the viruses against the type I IFN system. Taken together, these findings support the use of seabream AGs as a valuable experimental system to study virus-host interactions, in which sb-isg15 seems to play an important role.Versión del edito

Biological Control of Verticillium Wilt on Olive Trees by the Salt-Tolerant Strain Bacillus velezensis XT1

Verticillium wilt, caused by the pathogen Verticillium dahliae, is extremely devastating to olive trees (Olea europea). Currently, no successful control measure is available against it. The objective of this work was to evaluate the antifungal activity of Bacillus velezensis XT1, a well-characterized salt-tolerant biocontrol strain, against the highly virulent defoliating V. dahliae V024. In vitro, strain XT1 showed to reduce fungal mycelium from 34 to 100%, depending on if the assay was conducted with the supernatant, volatile compounds, lipopeptides or whole bacterial culture. In preventive treatments, when applied directly on young olive trees, it reduced Verticillium incidence rate and percentage of severity by 54 and ~80%, respectively. It increased polyphenol oxidase (PPO) activity by 395%, indicating an enhancement of disease resistance in plant tissues, and it decreased by 20.2% the number of fungal microsclerotia in soil. In adult infected trees, palliative inoculation of strain XT1 in the soil resulted in a reduction in Verticillium symptom severity by ~63%. Strain XT1 is biosafe, stable in soil and able to colonize olive roots endophytically. All the traits described above make B. velezensis XT1 a promising alternative to be used in agriculture for the management of Verticillium wilt.Xtrem Biotech S.LEuropean Union SME Instrument XTOnE-774657Spanish Ministry of Economy and Competitiveness SNEO-20161037ESpanish Government CGL2011-25748Spanish Ministry of Industry, Trade and Tourism (project VertiSOLUTION)Ramon y Cajal program from the Ministry of Economy and Competitiveness RYC-2014-15532CEI-BioTic grant of the BioTic Campus of International Excellence CAEP2-46Ministry of Economy and Competitiveness DI-14-0686