A prototype-based resonance model of rhythm categorization

Categorization of rhythmic patterns is prevalent in musical practice, an example of this being the transcription of (possibly not strictly metrical) music into musical notation. In this article we implement a dynamical systems' model of rhythm categorization based on the resonance theory of rhythm perception developed by Large (2010). This model is used to simulate the categorical choices of participants in two experiments of Desain and Honing (2003). The model accurately replicates the experimental data. Our results support resonance theory as a viable model of rhythm perception and show that by viewing rhythm perception as a dynamical system it is possible to model central properties of rhythm categorization

Soil carbon and microbes in the warming tropics

Climate warming could destabilise the Earth's largest terrestrial store of reactive carbon (C), by accelerating the decomposition of soil organic matter. A third of that C store resides in the tropics. The potential for tropical soils to sequester C, or to act as an additional source of CO2, will depend on the balance of C inputs and outputs, mediated by the response of soil microbial communities and their activity to perturbation. We review the impact of warming on microbial communities and C storage in humid tropical forest soils over multiple time-scales. Recent in situ experiments indicate high sensitivity of tropical forest soil C mineralisation to warming in the short term. However, whether this will translate into long-term soil C decline remains unclear. At decadal time-scales, high sensitivity of soil C mineralisation to warming is consistent with the correlation between the inter-annual variation in the tropical land surface temperature and atmospheric CO2 growth rate, and with simulations using the Carnegie-Ames-Stanford Approach biosphere model. This observed sensitivity may further contribute to climatic change over millennial time-scales, suggested by radiocarbon dating of organic matter in river basins showing a twofold acceleration in tropical soil C release during the late-glacial warming period. However, counter to this evidence, long-term stability of tropical soil C is suggested by observed steady-state soil C turnover across temperature gradients with elevation, and by the presence of C in tropical soils that pre-dates the Holocene Thermal Maximum and late-glacial warming periods. To help reconcile these recent experimental findings and long-term observations, we propose mechanisms to explain tropical soil C and microbial responses to warming across multiple time-scales. Combined in situ experimental and monitoring approaches—large-scale and cross-site—are urgently needed to resolve the interplay of these mechanisms across spatial and temporal scales, to shape a better understanding of the relationship between soil microbes and C storage in tropical soils

Multifrequency VLBA Monitoring of 3C 273 during the INTEGRAL Campaign in 2003 - I. Kinematics of the Parsec Scale Jet from 43 GHz Data

In this first of a series of papers describing polarimetric multifrequency Very Long Baseline Array (VLBA) monitoring of 3C 273 during a simultaneous campaign with the INTEGRAL gamma-ray satellite in 2003, we present 5 Stokes I images and source models at 7 mm. We show that a part of the inner jet (1-2 milliarcseconds from the core) is resolved in a direction transverse to the flow, and we analyse the kinematics of the jet within the first 10 mas. Based on the VLBA data and simultaneous single-dish flux density monitoring, we determine an accurate value for the Doppler factor of the parsec scale jet, and using this value with observed proper motions, we calculate the Lorentz factors and the viewing angles for the emission components in the jet. Our data indicates a significant velocity gradient across the jet with the components travelling near the southern edge being faster than the components with more northern path. We discuss our observations in the light of jet precession model and growing plasma instabilities.Comment: Accepted for publication in Astronomy & Astrophysics, 16 pages, 15 figure

Adaptation of soil microbial growth to temperature: using a tropical elevation gradient to predict future changes

Terrestrial biogeochemical feedbacks to the climate are strongly modulated by the temperature response of soil microorganisms. Tropical forests, in particular, exert a major influence on global climate because they are the most productive terrestrial ecosystem. We used an elevation gradient across tropical forest in the Andes (a gradient of 20°C mean annual temperature, MAT), to test whether soil bacterial and fungal community growth responses are adapted to long-term temperature differences. We evaluated the temperature dependency of soil bacterial and fungal growth using the leucine- and acetate-incorporation methods, respectively, and determined indices for the temperature response of growth: Q10 (temperature sensitivity over a given 10oC range) and Tmin(the minimum temperature for growth). For both bacterial and fungal communities, increased MAT (decreased elevation) resulted in increases in Q10and Tmin of growth. Across a MAT range from 6°C to 26°C, the Q10and Tmin varied for bacterial growth (Q10–20 = 2.4 to 3.5; Tmin = −8°C to −1.5°C) and fungal growth (Q10–20 = 2.6 to 3.6; Tmin = −6°C to −1°C). Thus, bacteria and fungi did not differ significantly in their growth temperature responses with changes in MAT. Our findings indicate that across natural temperature gradients, each increase in MAT by 1°C results in increases in Tmin of microbial growth by approximately 0.3°C and Q10–20by 0.05, consistent with long-term temperature adaptation of soil microbial communities. A 2°C warming would increase microbial activity across a MAT gradient of 6°C to 26°C by 28% to 15%, respectively, and temperature adaptation of microbial communities would further increase activity by 1.2% to 0.3%. The impact of warming on microbial activity, and the related impact on soil carbon cycling, is thus greater in regions with lower MAT. These results can be used to predict future changes in the temperature response of microbial activity over different levels of warming and over large temperature ranges, extending to tropical regions

Catching the radio flare in CTA 102 I. Light curve analysis

Context: The blazar CTA 102 (z=1.037) underwent a historical radio outburst in April 2006. This event offered a unique chance to study the physical properties of the jet. Aims: We used multifrequency radio and mm observations to analyze the evolution of the spectral parameters during the flare as a test of the shock-in-jet model under these extreme conditions. Methods: For the analysis of the flare we took into account that the flaring spectrum is superimposed on a quiescent spectrum. We reconstructed the latter from archival data and fitted a synchrotron self-absorbed distribution of emission. The uncertainties of the derived spectral parameters were calculated using Monte Carlo simulations. The spectral evolution is modeled by the shock-in-jet model, and the derived results are discussed in the context of a geometrical model (varying viewing angle) and shock-shock interaction. Results: The evolution of the flare in the turnover frequency-turnover flux density plane shows a double peak structure. The nature of this evolution is dicussed in the frame of shock-in-jet models. We discard the generation of the double peak structure in the turnover frequency-turnover flux density plane purely based on geometrical changes (variation of the Doppler factor). The detailed modeling of the spectral evolution favors a shock-shock interaction as a possible physical mechanism behind the deviations from the standard shock-in-jet model.Comment: 15 pages, 12 figure

Species-Specific Effects of Epigeic Earthworms on Microbial Community Structure during First Stages of Decomposition of Organic Matter

Background: Epigeic earthworms are key organisms in organic matter decomposition because of the interactions they establish with microorganisms. The earthworm species and the quality and/or substrate availability are expected to be major factors influencing the outcome of these interactions. Here we tested whether and to what extent the epigeic earthworms Eisenia andrei, Eisenia fetida and Perionyx excavatus, widely used in vermicomposting, are capable of altering the microbiological properties of fresh organic matter in the short-term. We also questioned if the earthworm-induced modifications to the microbial communities are dependent on the type of substrate ingested. Methodology/Principal Findings: To address these questions we determined the microbial community structure (phospholipid fatty acid profiles) and microbial activity (basal respiration and microbial growth rates) of three types of animal manure (cow, horse and rabbit) that differed in microbial composition, after being processed by each species of earthworm for one month. No differences were found between earthworm-worked samples with regards to microbial community structure, irrespective of type of manure, which suggests the existence of a bottleneck effect of worm digestion on microbial populations of the original material consumed. Moreover, in mesocosms containing cow manure the presence of E. andrei resulted not only in a decrease in bacterial and fungal biomass, but also in a reduced bacterial growth rate and total microbial activity, while no such reduction was found with E. fetida and P. excavatus

Soil bacterial and fungal communities across a pH gradient in an arable soil

Soils collected across a long-term liming experiment (pH 4.0-8.3), in which variation in factors other than pH have been minimized, were used to investigate the direct influence of pH on the abundance and composition of the two major soil microbial taxa, fungi and bacteria. We hypothesized that bacterial communities would be more strongly influenced by pH than fungal communities. To determine the relative abundance of bacteria and fungi, we used quantitative PCR (qPCR), and to analyze the composition and diversity of the bacterial and fungal communities, we used a bar-coded pyrosequencing technique. Both the relative abundance and diversity of bacteria were positively related to pH, the latter nearly doubling between pH 4 and 8. In contrast, the relative abundance of fungi was unaffected by pH and fungal diversity was only weakly related with pH. The composition of the bacterial communities was closely defined by soil pH; there was as much variability in bacterial community composition across the 180-m distance of this liming experiment as across soils collected from a wide range of biomes in North and South America, emphasizing the dominance of pH in structuring bacterial communities. The apparent direct influence of pH on bacterial community composition is probably due to the narrow pH ranges for optimal growth of bacteria. Fungal community composition was less strongly affected by pH, which is consistent with pure culture studies, demonstrating that fungi generally exhibit wider pH ranges for optimal growth. The ISME Journal (2010) 4, 1340-1351; doi: 10.1038/ismej.2010.58; published online 6 May 2010&nbsp