Use of molecular markers to identify soybean varieties: the experience of a public soybean breeding program.

The aim of this work is to demonstrate some cases where molecular markers were useful to identify soybean varieties in order to help breeders and the official service of protection of varieties in Brazil. The partnership between Embrapa/Epamig/Fundação Triângulo, located at Uberaba, Minas Gerais State, released some important soybean varieties adapted for the Brazilian Savannah region. One of the most important varieties developed by these partners, which was a very important variety in the recent soybean history in Brazil and also in the world, was MG/BR 46 (Conquista). ?Conquista? was released in 1995 and seemed to be just more one soybean variety for the use of soybean farmers in the Minas Gerais State, but the history proved that it was very different of the other varieties. With high yield stability, adapted to a broad range of environmental conditions (especially unfavourable conditions) and with a very rustic root system (including resistance to both root rot nematode species more common in Brazil, Meloidogyne javanica and M. incognita), ?Conquista? was sown in more than three million hectares in Brazil in a growing season. It is still sown widely (about 100.00 hectares in the growing season of 2010/2011) and was also largely used in crosses by Brazilian soybean breeders. A famous chapter of ?Conquista? history was the dispute between Fundação Triângulo (Minas Gerais State) and Fundação MT (Mato Grosso State), both of them Embrapa partners. Fundação MT released a new variety named MT/BR 49 (Pioneira), a few months after ?Conquista? was released, and a breeder suspected that ?Pioneira? was very similar to ?Conquista?. The question was clarified only with the use of BMT/13/25 page 2 molecular markers and the conclusion was that they presented the same genotype. Another history was that ?Conquista? was used to develop some RR (Roundup Ready) transgenic derived varieties (for example BRS Valiosa RR and BRS Favorita RR), and a problem of identification arose during the process of genetic seed production of BRS Valiosa RR and BRS Favorita RR, but in this case the SSR molecular markers used did not solve the problem. Another case of the use of molecular markers in Embrapa?s soybean breeding program developed by the partners of the Minas Gerais State is to clear a doubt about the origin of the variety BRSMG 800A, the first soybean Brazilian with brown tegument, and that was suspected to be a mutation for tegument color of the variety BRSMG 790A

Impacto de la condición corporal sobre la fertilidad en vacas de la provincia de Pastaza- Ecuador

El objetivo fue evaluar el efecto de la condición corporal sobre la fertilidad en vacas de la provincia de Pastaza-Ecuador. Se utilizaron 2434 registros reproductivos de la base de datos entre el 2009- Las variables analizadas fueron: estado reproductivo gestante y no gestante, año, raza, condición corporal (CC), celo, toro o pajuela utilizada, técnico inseminador. La muestra para el análisis estadístico de los datos se basó en tres modelos de ANOVA y un modelo mixto. El porcentaje de preñez a nivel provincial logrado con este programa de mejoramiento fue del 60 al 69%. La CC solo fue significativa para la raza Charolais mestiza, quien mostró un coeficiente de correlación lineal bajo negativo con respecto a la gestación, las otras variables celo, pajuela, técnico tampoco tuvieron diferencias estadísticas (P>0.05). Pero en el análisis del segundo modelo aplicado se encontró diferencias significativas entre el lugar (cantón) y CC (P=0.047) y entre la raza de la vaca y raza del toro (P=0.006). Se concluye que la (CC) influyó sobre la gestación dependiendo del lugar, independiente de la raza de la vaca, factor que no resultó importante en la variable reproductiva estudiada, los factores ambientales: año, cantón y CC, influyen en los niveles de gestación de la población estudiada, de los factores genéticos analizados las razas de la vaca y del padre no influyeron, solamente el factor toro fue importante en la gestación de la vaca y el factor humano resultó determinante como causa de variación en la gestación

9^9Be+120^{120}Sn scattering at near-barrier energies within a four body model

Cross sections for elastic and inelastic scattering of the weakly-bound $^9$Be nucleus on a $^{120}$Sn target have been measured at seven bombarding energies around and above the Coulomb barrier. The elastic angular distributions are analyzed with a four-body continuum-discretized coupled-channels (CDCC) calculation, which considers $^9$Be as a three-body projectile ($\alpha$ + $\alpha$ + n). An optical model analysis using the S\~ao Paulo potential is also shown for comparison. The CDCC analysis shows that the coupling to the continuum part of the spectrum is important for the agreement with experimental data even at energies around the Coulomb barrier, suggesting that breakup is an important process at low energies. At the highest incident energies, two inelastic peaks are observed at 1.19(5) and 2.41(5) MeV. Coupled-channels (CC) calculations using a rotational model confirm that the first inelastic peak corresponds to the excitation of the 2$_1^+$ state in $^{120}$Sn, while the second one likely corresponds to the excitation of the 3$_1^-$ state.Comment: 11 pages, 9 figures. Accepted as PR

Deletion Mutants of VPg Reveal New Cytopathology Determinants in a Picornavirus

BACKGROUND: Success of a viral infection requires that each infected cell delivers a sufficient number of infectious particles to allow new rounds of infection. In picornaviruses, viral replication is initiated by the viral polymerase and a viral-coded protein, termed VPg, that primes RNA synthesis. Foot-and-mouth disease virus (FMDV) is exceptional among picornaviruses in that its genome encodes 3 copies of VPg. Why FMDV encodes three VPgs is unknown. METHODOLOGY AND PRINCIPAL FINDINGS: we have constructed four mutant FMDVS that encode only one VPG: either VPg(1), VPg(3), or two chimeric versions containing part of VPg(1) and VPg(3). All mutants, except that encoding only VPg(1), were replication-competent. Unexpectedly, despite being replication-competent, the mutants did not form plaques on BHK-21 cell monolayers. The one-VPg mutant FMDVs released lower amounts of encapsidated viral RNA to the extracellular environment than wild type FMDV, suggesting that deficient plaque formation was associated with insufficient release of infectious progeny. Mutant FMDVs subjected to serial passages in BHK-21 cells regained plaque-forming capacity without modification of the number of copies of VPg. Substitutions in non-structural proteins 2C, 3A and VPg were associated with restoration of plaque formation. Specifically, replacement R55W in 2C was repeatedly found in several mutant viruses that had regained competence in plaque development. The effect of R55W in 2C was to mediate an increase in the extracellular viral RNA release without a detectable increase of total viral RNA that correlated with an enhanced capacity to alter and detach BHK-21 cells from the monolayer, the first stage of cell killing. CONCLUSIONS: The results link the VPg copies in the FMDV genome with the cytopathology capacity of the virus, and have unveiled yet another function of 2C: modulation of picornavirus cell-to-cell transmission. Implications for picornaviruses pathogenesis are discussed

Eco-bio-social determinants for house infestation by non-domiciliated Triatoma dimidiata in the Yucatan peninsula, Mexico

Background Chagas disease is a vector-borne disease of major importance in the Americas. Disease prevention is mostly limited to vector control. Integrated interventions targeting ecological, biological and social determinants of vector-borne diseases are increasingly used for improved control. Methodology/principal findings We investigated key factors associated with transient house infestation by T. dimidiata in rural villages in Yucatan, Mexico, using a mixed modeling approach based on initial null-hypothesis testing followed by multimodel inference and averaging on data from 308 houses from three villages. We found that the presence of dogs, chickens and potential refuges, such as rock piles, in the peridomicile as well as the proximity of houses to vegetation at the periphery of the village and to public light sources are major risk factors for infestation. These factors explain most of the intra-village variations in infestation. Conclusions/significance These results underline a process of infestation distinct from that of domiciliated triatomines and may be used for risk stratification of houses for both vector surveillance and control. Combined integrated vector interventions, informed by an Ecohealth perspective, should aim at targeting several of these factors to effectively reduce infestation and provide sustainable vector control

UGT1A1 is a major locus influencing bilirubin levels in African Americans

Total serum bilirubin is associated with several clinical outcomes, including cardiovascular disease, diabetes and drug metabolism. We conducted a genome-wide association study in 619 healthy unrelated African Americans in an attempt to replicate reported findings in Europeans and Asians and to identify novel loci influencing total serum bilirubin levels. We analyzed a dense panel of over two million genotyped and imputed SNPs in additive genetic models adjusting for age, sex, and the first two significant principal components from the sample covariance matrix of genotypes. Thirty-nine SNPs spanning a 78 kb region within the UGT1A1 displayed P-values <5 × 10−8. The lowest P-value was 1.7 × 10−22 for SNP rs887829. None of SNPs in the UGT1A1 remained statistically significant in conditional association analyses that adjusted for rs887829. In addition, SNP rs10929302 located in phenobarbital response enhancer module was significantly associated with bilirubin level with a P-value of 1.37 × 10−11; this enhancer module is believed to have a critical role in phenobarbital treatment of hyperbilirubinemia. Interestingly, the lead SNP, rs887829, is in strong linkage disequilibrium (LD) (r2≥0.74) with rs10929302. Taking advantage of the lower LD and shorter haplotypes in African-ancestry populations, we identified rs887829 as a more refined proxy for the causative variant influencing bilirubin levels. Also, we replicated the reported association between variants in SEMA3C and bilirubin levels. In summary, UGT1A1 is a major locus influencing bilirubin levels and the results of this study promise to contribute to understanding of the etiology and treatment of hyperbilirubinaemia in African-ancestry populations

The improbable transmission of Trypanosoma cruzi to human: the missing link in the dynamics and control of Chagas disease

Chagas disease has a major impact on human health in Latin America and is becoming of global concern due to international migrations. Trypanosoma cruzi, the etiological agent of the disease, is one of the rare human parasites transmitted by the feces of its vector, as it is unable to reach the salivary gland of the insect. This stercorarian transmission is notoriously poorly understood, despite its crucial role in the ecology and evolution of the pathogen and the disease. The objective of this study was to quantify the probability of T. cruzi vectorial transmission to humans, and to use such an estimate to predict human prevalence from entomological data. We developed several models of T. cruzi transmission to estimate the probability of transmission from vector to host. Using datasets from the literature, we estimated the probability of transmission per contact with an infected triatomine to be 5.8x10(-4) (95%CI: [2.6; 11.0] x 10(-4)). This estimate was consistent across triatomine species, robust to variations in other parameters, and corresponded to 900-4,000 contacts per case. Our models subsequently allowed predicting human prevalence from vector abundance and infection rate in 7/10 independent datasets covering various triatomine species and epidemiological situations. This low probability of T. cruzi transmission reflected well the complex and unlikely mechanism of transmission via insect feces, and allowed predicting human prevalence from basic entomological data. Although a proof of principle study would now be valuable to validate our models' predictive ability in an even broader range of entomological and ecological settings, our quantitative estimate could allow switching the evaluation of disease risk and vector control program from purely entomological indexes to parasitological measures, as commonly done for other major vector borne diseases. This might lead to different quantitative perspectives as these indexes are well known not to be proportional one to another

Multi-ancestry GWAS reveals excitotoxicity associated with outcome after ischaemic stroke

During the first hours after stroke onset, neurological deficits can be highly unstable: some patients rapidly improve, while others deteriorate. This early neurological instability has a major impact on long-term outcome. Here, we aimed to determine the genetic architecture of early neurological instability measured by the difference between the National Institutes of Health Stroke Scale (NIHSS) within 6 h of stroke onset and NIHSS at 24 h. A total of 5876 individuals from seven countries (Spain, Finland, Poland, USA, Costa Rica, Mexico and Korea) were studied using a multi-ancestry meta-analyses. We found that 8.7% of NIHSS at 24 h of variance was explained by common genetic variations, and also that early neurological instability has a different genetic architecture from that of stroke risk. Eight loci (1p21.1, 1q42.2, 2p25.1, 2q31.2, 2q33.3, 5q33.2, 7p21.2 and 13q31.1) were genome-wide significant and explained 1.8% of the variability suggesting that additional variants influence early change in neurological deficits. We used functional genomics and bioinformatic annotation to identify the genes driving the association from each locus. Expression quantitative trait loci mapping and summary data-based Mendelian randomization indicate that ADAM23 (log Bayes factor = 5.41) was driving the association for 2q33.3. Gene-based analyses suggested that GRIA1 (log Bayes factor = 5.19), which is predominantly expressed in the brain, is the gene driving the association for the 5q33.2 locus. These analyses also nominated GNPAT (log Bayes factor = 7.64) ABCB5 (log Bayes factor = 5.97) for the 1p21.1 and 7p21.1 loci. Human brain single-nuclei RNA-sequencing indicates that the gene expression of ADAM23 and GRIA1 is enriched in neurons. ADAM23, a presynaptic protein and GRIA1, a protein subunit of the AMPA receptor, are part of a synaptic protein complex that modulates neuronal excitability. These data provide the first genetic evidence in humans that excitotoxicity may contribute to early neurological instability after acute ischaemic stroke. Ibanez et al. perform a multi-ancestry meta-analysis to investigate the genetic architecture of early stroke outcomes. Two of the eight genome-wide significant loci identified-ADAM23 and GRIA1-are involved in synaptic excitability, suggesting that excitotoxicity contributes to neurological instability after ischaemic stroke.Peer reviewe