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Non-symmetric pinning of topological defects in living liquid crystals
Topological defects, such as vortices and disclinations, play a crucial role in spatiotemporal organization of equilibrium and non-equilibrium systems. The defect immobilization or pinning is a formidable challenge in the context of the out-of-equilibrium system, like a living liquid crystal, a suspension of swimming bacteria in lyotropic liquid crystal. Here we control the emerged topological defects in a living liquid crystal by arrays of 3D-printed microscopic obstacles (pillars). Our studies show that while −1/2 defects may be easily immobilized by the pillars, +1/2 defects remain motile. Due to attraction between oppositely charged defects, positive defects remain in the vicinity of pinned negative defects, and the diffusivity of positive defects is significantly reduced. Experimental findings are rationalized by computational modeling of living liquid crystals. Our results provide insight into the engineering of active systems via targeted immobilization of topological defects
A constitutive law for dense granular flows
A continuum description of granular flows would be of considerable help in
predicting natural geophysical hazards or in designing industrial processes.
However, the constitutive equations for dry granular flows, which govern how
the material moves under shear, are still a matter of debate. One difficulty is
that grains can behave like a solid (in a sand pile), a liquid (when poured
from a silo) or a gas (when strongly agitated). For the two extreme regimes,
constitutive equations have been proposed based on kinetic theory for
collisional rapid flows, and soil mechanics for slow plastic flows. However,
the intermediate dense regime, where the granular material flows like a liquid,
still lacks a unified view and has motivated many studies over the past decade.
The main characteristics of granular liquids are: a yield criterion (a critical
shear stress below which flow is not possible) and a complex dependence on
shear rate when flowing. In this sense, granular matter shares similarities
with classical visco-plastic fluids such as Bingham fluids. Here we propose a
new constitutive relation for dense granular flows, inspired by this analogy
and recent numerical and experimental work. We then test our three-dimensional
(3D) model through experiments on granular flows on a pile between rough
sidewalls, in which a complex 3D flow pattern develops. We show that, without
any fitting parameter, the model gives quantitative predictions for the flow
shape and velocity profiles. Our results support the idea that a simple
visco-plastic approach can quantitatively capture granular flow properties, and
could serve as a basic tool for modelling more complex flows in geophysical or
industrial applications.Comment: http://www.nature.com/nature/journal/v441/n7094/abs/nature04801.htm
Mobility promotes and jeopardizes biodiversity in rock-paper-scissors games
Biodiversity is essential to the viability of ecological systems. Species
diversity in ecosystems is promoted by cyclic, non-hierarchical interactions
among competing populations. Such non-transitive relations lead to an evolution
with central features represented by the `rock-paper-scissors' game, where rock
crushes scissors, scissors cut paper, and paper wraps rock. In combination with
spatial dispersal of static populations, this type of competition results in
the stable coexistence of all species and the long-term maintenance of
biodiversity. However, population mobility is a central feature of real
ecosystems: animals migrate, bacteria run and tumble. Here, we observe a
critical influence of mobility on species diversity. When mobility exceeds a
certain value, biodiversity is jeopardized and lost. In contrast, below this
critical threshold all subpopulations coexist and an entanglement of travelling
spiral waves forms in the course of temporal evolution. We establish that this
phenomenon is robust, it does not depend on the details of cyclic competition
or spatial environment. These findings have important implications for
maintenance and evolution of ecological systems and are relevant for the
formation and propagation of patterns in excitable media, such as chemical
kinetics or epidemic outbreaks.Comment: Final submitted version; the printed version can be found at
http://dx.doi.org/10.1038/nature06095 Supplementary movies are available at
http://www.theorie.physik.uni-muenchen.de/lsfrey/images_content/movie1.AVI
and
http://www.theorie.physik.uni-muenchen.de/lsfrey/images_content/movie2.AV
Structure formation in active networks
Structure formation and constant reorganization of the actin cytoskeleton are
key requirements for the function of living cells. Here we show that a minimal
reconstituted system consisting of actin filaments, crosslinking molecules and
molecular-motor filaments exhibits a generic mechanism of structure formation,
characterized by a broad distribution of cluster sizes. We demonstrate that the
growth of the structures depends on the intricate balance between
crosslinker-induced stabilization and simultaneous destabilization by molecular
motors, a mechanism analogous to nucleation and growth in passive systems. We
also show that the intricate interplay between force generation, coarsening and
connectivity is responsible for the highly dynamic process of structure
formation in this heterogeneous active gel, and that these competing mechanisms
result in anomalous transport, reminiscent of intracellular dynamics
Sculpting oscillators with light within a nonlinear quantum fluid
Seeing macroscopic quantum states directly remains an elusive goal. Particles
with boson symmetry can condense into such quantum fluids producing rich
physical phenomena as well as proven potential for interferometric devices
[1-10]. However direct imaging of such quantum states is only fleetingly
possible in high-vacuum ultracold atomic condensates, and not in
superconductors. Recent condensation of solid state polariton quasiparticles,
built from mixing semiconductor excitons with microcavity photons, offers
monolithic devices capable of supporting room temperature quantum states
[11-14] that exhibit superfluid behaviour [15,16]. Here we use microcavities on
a semiconductor chip supporting two-dimensional polariton condensates to
directly visualise the formation of a spontaneously oscillating quantum fluid.
This system is created on the fly by injecting polaritons at two or more
spatially-separated pump spots. Although oscillating at tuneable THz-scale
frequencies, a simple optical microscope can be used to directly image their
stable archetypal quantum oscillator wavefunctions in real space. The
self-repulsion of polaritons provides a solid state quasiparticle that is so
nonlinear as to modify its own potential. Interference in time and space
reveals the condensate wavepackets arise from non-equilibrium solitons. Control
of such polariton condensate wavepackets demonstrates great potential for
integrated semiconductor-based condensate devices.Comment: accepted in Nature Physic
Nonlinear vortex light beams supported and stabilized by dissipation
We describe nonlinear Bessel vortex beams as localized and stationary
solutions with embedded vorticity to the nonlinear Schr\"odinger equation with
a dissipative term that accounts for the multi-photon absorption processes
taking place at high enough powers in common optical media. In these beams,
power and orbital angular momentum are permanently transferred to matter in the
inner, nonlinear rings, at the same time that they are refueled by spiral
inward currents of energy and angular momentum coming from the outer linear
rings, acting as an intrinsic reservoir. Unlike vortex solitons and dissipative
vortex solitons, the existence of these vortex beams does not critically depend
on the precise form of the dispersive nonlinearities, as Kerr self-focusing or
self-defocusing, and do not require a balancing gain. They have been shown to
play a prominent role in "tubular" filamentation experiments with powerful,
vortex-carrying Bessel beams, where they act as attractors in the beam
propagation dynamics. Nonlinear Bessel vortex beams provide indeed a new
solution to the problem of the stable propagation of ring-shaped vortex light
beams in homogeneous self-focusing Kerr media. A stability analysis
demonstrates that there exist nonlinear Bessel vortex beams with single or
multiple vorticity that are stable against azimuthal breakup and collapse, and
that the mechanism that renders these vortexes stable is dissipation. The
stability properties of nonlinear Bessel vortex beams explain the experimental
observations in the tubular filamentation experiments.Comment: Chapter of boo
Protein Pattern Formation
Protein pattern formation is essential for the spatial organization of many
intracellular processes like cell division, flagellum positioning, and
chemotaxis. A prominent example of intracellular patterns are the oscillatory
pole-to-pole oscillations of Min proteins in \textit{E. coli} whose biological
function is to ensure precise cell division. Cell polarization, a prerequisite
for processes such as stem cell differentiation and cell polarity in yeast, is
also mediated by a diffusion-reaction process. More generally, these functional
modules of cells serve as model systems for self-organization, one of the core
principles of life. Under which conditions spatio-temporal patterns emerge, and
how these patterns are regulated by biochemical and geometrical factors are
major aspects of current research. Here we review recent theoretical and
experimental advances in the field of intracellular pattern formation, focusing
on general design principles and fundamental physical mechanisms.Comment: 17 pages, 14 figures, review articl
The minimization of mechanical work in vibrated granular matter
Experiments and computer simulations are carried out to investigate phase separation in a granular gas under vibration. The densities of the dilute and the dense phase are found to follow a lever rule and obey an equation of state. Here we show that the Maxwell equal-areas construction predicts the coexisting pressure and binodal densities remarkably well, even though the system is far from thermal equilibrium. This construction can be linked to the minimization of mechanical work associated with density fluctuations without invoking any concept related to equilibrium-like free energies
A generic travelling wave solution in dissipative laser cavity
A large family of cosh-Gaussian travelling wave solution of a complex Ginzburg–Landau equation (CGLE), that describes dissipative semiconductor laser cavity is derived. Using perturbation method, the stability region is identified. Bifurcation analysis is done by smoothly varying the cavity loss coefficient to provide insight of the system dynamics. He’s variational method is adopted to obtain the standard sech-type and the notso-explored but promising cosh-Gaussian type, travelling wave solutions. For a given set of system parameters, only one sech solution is obtained, whereas several distinct solution points are derived for cosh-Gaussian case. These solutions yield a wide variety of travelling wave profiles, namely Gaussian, near-sech, flat-top and a cosh-Gaussianwith variable central dip. A split-step Fourier method and pseudospectral method have been used for direct numerical solution of the CGLE and travelling wave profiles identical to the analytical profiles have been obtained. We also identified the parametric zone that promises an extremely large family of cosh-Gaussian travelling wave solutions with tunable shape. This suggests that the cosh-Gaussian profile is quite generic and would be helpful for further theoretical as well as experimental investigation on pattern formation, pulse dynamics andlocalization in semiconductor laser cavity
Actively crosslinked microtubule networks: mechanics, dynamics and filament sliding
Cytoskeletal networks are foundational examples of active matter and central
to self-organized structures in the cell. In vivo, these networks are active
and heavily crosslinked. Relating their large-scale dynamics to properties of
their constituents remains an unsolved problem. Here we study an in vitro
system made from microtubules and XCTK2 kinesin motors, which forms an aligned
and active gel. Using photobleaching we demonstrate that the gel's aligned
microtubules, driven by motors, continually slide past each other at a speed
independent of the local polarity. This phenomenon is also observed, and
remains unexplained, in spindles. We derive a general framework for coarse
graining microtubule gels crosslinked by molecular motors from microscopic
considerations. Using the microtubule-microtubule coupling, and force-velocity
relationship for kinesin, this theory naturally explains the experimental
results: motors generate an active strain-rate in regions of changing polarity,
which allows microtubules of opposite polarities to slide past each other
without stressing the material
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