Constraints on Intervening Stellar Populations Toward the Large Magellanic Cloud

The suggestion by Zaritsky & Lin that a vertical extension of the red clump feature in color-magnitude diagrams of the Large Magellanic Cloud (LMC) is consistent with a significant population of foreground stars to the LMC that could account for the observed microlensing optical depth has been challenged by various investigators. We respond by (1) examining each of the challenges presented and (2) presenting new photometric and spectroscopic data. We conclude that although the CMD data do not mandate the existence of a foreground population, they are entirely consistent with a foreground population associated with the LMC that contributes significantly (~ 50%) to the observed microlensing optical depth. From our new data, we conclude that <~ 40% of the VRC stars are young, massive red clump stars because (1) synthetic color-magnitude diagrams created using the star formation history derived indepdently from HST data suggest that < 50% of the VRC stars are young, massive red clump stars, (2) the angular distribution of the VRC stars is more uniform than that of the young (age < 1 Gyr) main sequence stars, and (3) the velocity dispersion of the VRC stars in the region of the LMC examined by ZL is inconsistent with the expectation for a young disk population. Each of these arguments is predicated on assumptions and the conclusions are uncertain. Therefore, an exact determination of the contribution to the microlensing optical depth by the various hypothesized foreground populations, and the subsequent conclusions regarding the existence of halo MACHOs, requires a detailed knowledge of many complex astrophysical issues, such as the IMF, star formation history, and post-main sequence stellar evolution. (abridged)Comment: Scheduled for publication in AJ in May 199

An enrichment protocol and analysis pipeline for long read sequencing of the hepatitis B virus transcriptome

Hepatitis B virus (HBV) is one of the smallest human DNA viruses and its 3.2 Kb genome encodes multiple overlapping open reading frames, making its viral transcriptome challenging to dissect. Previous studies have combined quantitative PCR and Next Generation Sequencing to identify viral transcripts and splice junctions, however the fragmentation and selective amplification used in short read sequencing precludes the resolution of full length RNAs. Our study coupled an oligonucleotide enrichment protocol with state-of-the-art long read sequencing (PacBio) to identify the repertoire of HBV RNAs. This methodology provides sequencing libraries where up to 25 % of reads are of viral origin and enable the identification of canonical (unspliced), non-canonical (spliced) and chimeric viral-human transcripts. Sequencing RNA isolated from de novo HBV infected cells or those transfected with 1.3 × overlength HBV genomes allowed us to assess the viral transcriptome and to annotate 5' truncations and polyadenylation profiles. The two HBV model systems showed an excellent agreement in the pattern of major viral RNAs, however differences were noted in the abundance of spliced transcripts. Viral-host chimeric transcripts were identified and more commonly found in the transfected cells. Enrichment capture and PacBio sequencing allows the assignment of canonical and non-canonical HBV RNAs using an open-source analysis pipeline that enables the accurate mapping of the HBV transcriptome

New Models for a Triaxial Milky Way Spheroid and Effect on the Microlensing Optical Depth to the Large Magellanic Cloud

We obtain models for a triaxial Milky Way spheroid based on data by Newberg and Yanny. The best fits to the data occur for a spheroid center that is shifted by 3kpc from the Galactic Center. We investigate effects of the triaxiality on the microlensing optical depth to the Large Magellanic Cloud (LMC). The optical depth can be used to ascertain the number of Massive Compact Halo Objects (MACHOs); a larger spheroid contribution would imply fewer Halo MACHOs. On the one hand, the triaxiality gives rise to more spheroid mass along the line of sight between us and the LMC and thus a larger optical depth. However, shifting the spheroid center leads to an effect that goes in the other direction: the best fit to the spheroid center is_away_ from the line of sight to the LMC. As a consequence, these two effects tend to cancel so that the change in optical depth due to the Newberg/Yanny triaxial halo is at most 50%. After subtracting the spheroid contribution in the four models we consider, the MACHO contribution (central value) to the mass of the Galactic Halo varies from \~(8-20)% if all excess lensing events observed by the MACHO collaboration are assumed to be due to MACHOs. Here the maximum is due to the original MACHO collaboration results and the minimum is consistent with 0% at the 1 sigma error level in the data.Comment: 26 pages, 2 figures. v2: minor revisions. v3: expanded discussion of the local spheroid density and minor revisions to match version published in Journal of Cosmology and Astroparticle Physics (JCAP

Fully differential W' production and decay at next-to-leading order in QCD

We present the fully differential production and decay of a W' boson, with arbitrary vector and axial-vector couplings, to any final state at next-to-leading order in QCD. We demonstrate a complete factorization of couplings at next-to-leading order in both the partial width of the W' boson, and in the full two-to-two cross section. We provide numerical predictions for the contribution of a W' boson to single-top-quark production, and separate results based on whether the mass of the right-handed neutrino (nu_R) is light enough for the leptonic decay channel to be open. The single-top-quark analysis will allow for an improved direct W' mass limit of 525-550 GeV using data from run I of the Fermilab Tevatron. We propose a modified tolerance method for estimating parton distribution function uncertainties in cross sections.Comment: 23 pages, revtex3, 13 ps fig

An enrichment protocol and analysis pipeline for long read sequencing of the hepatitis B virus transcriptome

Hepatitis B virus (HBV) is one of the smallest human DNA viruses and its 3.2 Kb genome encodes multiple overlapping open reading frames, making its viral transcriptome challenging to dissect. Previous studies have combined quantitative PCR and Next Generation Sequencing to identify viral transcripts and splice junctions, however the fragmentation and selective amplification used in short read sequencing precludes the resolution of full length RNAs. Our study coupled an oligonucleotide enrichment protocol with state-of-the-art long read sequencing (PacBio) to identify the repertoire of HBV RNAs. This methodology provides sequencing libraries where up to 25 % of reads are of viral origin and enable the identification of canonical (unspliced), non-canonical (spliced) and chimeric viral-human transcripts. Sequencing RNA isolated from de novo HBV infected cells or those transfected with 1.3 × overlength HBV genomes allowed us to assess the viral transcriptome and to annotate 5′ truncations and polyadenylation profiles. The two HBV model systems showed an excellent agreement in the pattern of major viral RNAs, however differences were noted in the abundance of spliced transcripts. Viral-host chimeric transcripts were identified and more commonly found in the transfected cells. Enrichment capture and PacBio sequencing allows the assignment of canonical and non-canonical HBV RNAs using an open-source analysis pipeline that enables the accurate mapping of the HBV transcriptome

Ozone in the Pacific tropical troposphere from ozonesonde observations

Ozone vertical profile measurements obtained from ozonesondes flown at Fiji, Samoa, Tahiti, and the Galapagos are used to characterize ozone in the troposphere over the tropical Pacific. There is a significant seasonal variation at each of these sites. At sites in both the eastern and western Pacific, ozone mixing ratios are greatest at almost all levels in the troposphere during the September‐November season and smallest during March‐May. The vertical profile has a relative maximum at all of the sites in the midtroposphere throughout the year (the largest amounts are usually found near the tropopause). This maximum is particularly pronounced during the September‐November season. On average, throughout the troposphere, the Galapagos has larger ozone amounts than the western Pacific sites. A trajectory climatology is used to identify the major flow regimes that are associated with the characteristic ozone behavior at various altitudes and seasons. The enhanced ozone seen in the midtroposphere during September‐November is associated with flow from the continents. In the western Pacific this flow is usually from southern Africa (although 10‐day trajectories do not always reach the continent) but also may come from Australia and Indonesia. In the Galapagos the ozone peak in the midtroposphere is seen in flow from the South American continent and particularly from northern Brazil. High ozone concentrations within potential source regions and flow characteristics associated with the ozone mixing ratio peaks seen in both the western and eastern Pacific suggest that these enhanced ozone mixing ratios result from biomass burning. In the upper troposphere, low ozone amounts are seen with flow that originates in the convective western Pacific

Multiorder coherent Raman scattering of a quantum probe field

We study the multiorder coherent Raman scattering of a quantum probe field in a far-off-resonance medium with a prepared coherence. Under the conditions of negligible dispersion and limited bandwidth, we derive a Bessel-function solution for the sideband field operators. We analytically and numerically calculate various quantum statistical characteristics of the sideband fields. We show that the multiorder coherent Raman process can replicate the statistical properties of a single-mode quantum probe field into a broad comb of generated Raman sidebands. We also study the mixing and modulation of photon statistical properties in the case of two-mode input. We show that the prepared Raman coherence and the medium length can be used as control parameters to switch a sideband field from one type of photon statistics to another type, or from a non-squeezed state to a squeezed state and vice versa.Comment: 12 pages, 7 figures, to be published in Phys. Rev.

Discovery of a peculiar Cepheid-like star towards the northern edge of the Small Magellanic Cloud

For seven years, the EROS-2 project obtained a mass of photometric data on variable stars. We present a peculiar Cepheid-like star, in the direction of the Small Magellanic Cloud, which demonstrates unusual photometric behaviour over a short time interval. We report on data of the photometry acquired by the MARLY telescope and spectroscopy from the EFOSC instrument for this star, called EROS2 J005135-714459(sm0060n13842), which resembles the unusual Cepheid HR 7308. The light curve of our target is analysed using the Analysis of Variance method to determine a pulsational period of 5.5675 days. A fit of time-dependent Fourier coefficients is performed and a search for proper motion is conducted. The light curve exhibits a previously unobserved and spectacular change in both mean magnitude and amplitude, which has no clear theoretical explanation. Our analysis of the spectrum implies a radial velocity of 104 km s$^{-1}$ and a metallicity of -0.4$\pm$0.2 dex. In the direction of right ascension, we measure a proper motion of 17.4$\pm$6.0 mas yr$^{-1}$ using EROS astrometry, which is compatible with data from the NOMAD catalogue. The nature of EROS2 J005135-714459(sm0060n13842) remains unclear. For this star, we may have detected a non-zero proper motion for this star, which would imply that it is a foreground object. Its radial velocity, pulsational characteristics, and photometric data, however, suggest that it is instead a Cepheid-like object located in the SMC. In such a case, it would present a challenge to conventional Cepheid models.Comment: Correction of typos in the abstrac

Pixel lensing observations towards globular clusters

It has been suggested that a monitoring program employing the pixel lensing method to search for microlensing events towards galactic globular clusters may increase the statistics and discriminate among different halo models. Stimulated by this proposal, we evaluate an upper limit to the pixel lensing event rate for such a survey. Four different dark halo models have been considered changing both the flattening and the slope of the mass density profile. The lenses mass function has been modelled as a homogenous power - law for $\mu \in (\mu_l, \mu_u)$ and both the mass limits and the slope of the mass function have been varied to investigate their effect on the rate. The target globular clusters have been selected in order to minimize the disk contribution to the event rate. We find that a pixel lensing survey towards globular clusters is unable to discriminate among different halo models since the number of detectable events is too small to allow any reliable statistical analysis.Comment: 10 pages, accepted for publication on A&

Foreign body granuloma in the anterior abdominal wall mimicking an acute appendicular lump and induced by a translocated copper-T intrauterine contraceptive device: a case report

<p>Abstract</p> <p>Introduction</p> <p>Intrauterine contraceptive devices may at times perforate and migrate to adjacent organs. Such uterine perforation usually passes unnoticed with development of potentially serious complications.</p> <p>Case presentation</p> <p>A 25-year-old woman of North Indian origin presented with an acute tender lump in the right iliac fossa. The lump was initially thought to be an appendicular lump and treated conservatively. Resolution of the lump was incomplete. On exploratory laparotomy, a hard suspicious mass was found in the anterior abdominal wall of the right iliac fossa. Wide excision and bisection of the mass revealed a copper-T embedded inside. Examination of the uterus did not show any evidence of perforation. The next day, the patient gave a history of past copper-T Intrauterine contraceptive device insertion.</p> <p>Conclusions</p> <p>Copper-T insertion is one of the simplest contraceptive methods but its neglect with inadequate follow-up may lead to uterine perforation and extra-uterine migration. Regular self-examination for the "threads" supplemented with abdominal X-ray and/or ultrasound in the follow-up may detect copper-T migration early. To the best of our knowledge, this is the first report of intrauterine contraceptive device migration to the anterior abdominal wall of the right iliac fossa.</p