Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb?

Arctic plants are affected by many stressors. Root-associated fungi are thought to influence plant performance in stressful environmental conditions. However, the relationships are not well-known; do the number of fungal partners, their ecological functions and community composition mediate the impact of environmental conditions and/or influence host plant performance? To address these questions, we used a common arctic plant as a model system: Bistorta vivipara. Whole plants (including root system, n = 214) were collected from nine locations in Spitsbergen. Morphometric features were measured as a proxy for plant performance and combined with metabarcoding datasets of their root-associated fungi (amplicon sequence variants, ASVs), edaphic and meteorological variables. Seven biological hypotheses regarding fungal influence on plant measures were tested using structural equation modelling. The best-fitting model revealed that local temperature affected plants both directly (negatively aboveground and positively below-ground) and indirectly - mediated by fungal richness and the ratio of symbio- and saprotrophic ASVs. The influence of temperature on host plants is therefore complex and should be examined further. Fungal community composition did not impact plant measurements and plant reproductive investment was not influenced by any fungal parameters. The lack of impact of fungal community composition on plant performance suggests that the functional importance of fungi is more essential for the plant than their identity

Seasonality of vertical flux and sinking particle characteristics in an ice-free high arctic fjord—Different from subarctic fjords?

Source: http://dx.doi.org/10.1016/j.jmarsys.2015.10.003 A manuscript version of this article is part of Ingrid Wiedmann's doctoral thesis, which is available in Munin at http://hdl.handle.net/10037/8293The arctic Adventfjorden (78°N, 15°E, Svalbard) used to be seasonally ice-covered but has mostly been ice-free since 2007. We used this ice-free arctic fjord as a model area to investigate (1) how the vertical fl ux of biomass (chlorophyll a and particulate organic carbon, POC) follows the seasonality of suspended material, (2) how sink- ing particle characteristics change seasonally and affect the vertical fl ux, and (3) if the vertical fl ux in the ice-free arctic fjord with glacial runoff resembles the fl ux in subarctic ice-free fjords. During seven fi eld investigations (December 2011 – September 2012), suspended biomass was determined (5, 15, 25, and 60 m), and short-term sediment traps were deployed (20, 30, 40, and 60 m), partly modi fi ed with gel- fi lled jars to study the size and frequency distribution of sinking particles. During winter, resuspension from the sea fl oor resulted in large, detrital sinking particles. Intense sedimentation of fresh biomass occurred during the spring bloom. The highest POC fl ux was found during autumn (770 – 1530 mg POC m − 2 d − 1 ), associated with sediment-loaded glacial runoff and high pteropod abundances. The vertical biomass fl ux in the ice-free arctic Adventfjorden thus resem- bled that in subarctic fjords during winter and spring, but a higher POC sedimentation was observed during autumn

When a year is not enough: Further study of the seasonality of planktonic protist communities structure in an ice-free high arctic fjord (adventfjorden, west spitsbergen)

As a contribution to understanding the ecological framework of protistan seasonal succession patterns, we present the weekly-to-monthly (January–October) light microscopy-based study of nano- and microplanktonic protist communities of Adventfjorden waters in 2013. In general, protist dynamics corresponded to the classic paradigm for the Arctic ice-free waters with extremely low abundance and diversity in winter, with the main abundance and chlorophyll-a peak in April-May, followed by a diverse but low abundant community during summer/autumn. However, the reference of the obtained data to the previously conducted year-round research in 2012 allows us to observe substantial variability in seasonal patterns between the two consecutive years. The most striking difference concerned the spring bloom composition and abundance, with clear domination of Phaeocystis pouchetii in Atlantified fjord waters in 2012 and Bacillariophyceae-dominated (mainly Fragilariopsis, Thalassiosira nordenskioeldii, and, in a lesser extent, also Pseudo-nitzschia seriata) bloom in 2013 when local water prevailed. On the other hand, a surprisingly high share of spring bloom taxa persisted throughout the summer/autumn of 2013 when they co-occurred with typical summer taxa (dinoflagellates and other small flagellates). Their extended growth could, at least in part, result from scarce Ciliophora throughout the season, which, in turn, can be attributed to the high grazing pressure of very numerous meroplankton and mesozooplankton. In light of this, our results may be relevant in discussions proposed for the West Spitsbergen waters link between the Atlantic water inflow and the spring bloom composition, as well as its further progression in the productive season. They also highlight the strong need for further high-resolution monitoring of annual plankton cycles and great caution when looking for phenological patterns within a single year or when interpreting short-term data

Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA

The wide, but scattered distribution of group I introns in nature is a result of two processes; the vertical inheritance of introns with or without losses, and the occasional transfer of introns across species barriers. Reversal of the group I intron self-splicing reaction, termed reverse splicing, coupled with reverse transcription and genomic integration potentially mediate an RNA-based intron mobility pathway. Compared to the well characterized endonuclease-mediated intron homing, reverse splicing is less specific and represents a likely explanation for many intron transpositions into new genomic sites. However, the frequency and general role of an RNA-based mobility pathway in the spread of natural group I introns is still unclear. We have used the twin-ribozyme intron (Dir.S956-1) from the myxomycete Didymium iridis to test how a mobile group I intron containing a homing endonuclease gene (HEG) selects between potential insertion sites in the small subunit (SSU) rRNA in vitro, in Escherichia coli and in yeast. Surprisingly, the results show a site-specific RNA-based targeting of Dir.S956-1 into its natural (S956) SSU rRNA site. Our results suggest that reverse splicing, in addition to the established endonuclease-mediated homing mechanism, potentially accounts for group I intron spread into the homologous sites of different strains and species

The summer bacterial and archaeal community composition of the northern Barents Sea

Climate change related alterations in the Arctic have influences on the marine ecosystems, in particular on phytoplankton bloom dynamics. Since phytoplankton blooms are the main provider of carbon sources to the microbial loop, the bacterial and archaeal community are affected by the changes as well. Warmer water and less sea ice can lead to an earlier onset of phytoplankton blooms and consequently also to changes in the bacterial and archaeal community dynamics throughout Arctic summers. Here, we compared the bacterial and archaeal community composition during three summers (2018, 2019, and 2021) along a transect from the Barents Sea to the Arctic Ocean north of Svalbard. We used 16S rRNA gene sequencing to investigate changes in the communities in time and space. The main results showed that, Gammaproteobacteria (Nitrincolaceae), Bacteroidia (Polaribacter), and Alphaproteobacteria (SAR11 clade 1a members) dominated the bacterial and archaeal community in the surface waters but varied in abundance patterns between the years. The variations are potentially a result of different phytoplankton bloom stages and consequently differences in the availability of carbon sources. The distinctly different deep water communities were dominated by Candidatus Nitrosopumilus, Marinimicrobia, and members of the SAR324 clade in all years. The results indicate that changes in phytoplankton bloom dynamics can influence bacterial and archaeal community and thereby marine carbon cycling in surface waters, although direct links to the effects of global warming remain uncertain.publishedVersio

Dead or Alive; or Does It Really Matter? Level of Congruency Between Trophic Modes in Total and Active Fungal Communities in High Arctic Soil

Describing dynamics of belowground organisms, such as fungi, can be challenging. Results of studies based on environmental DNA (eDNA) may be biased as the template does not discriminate between metabolically active cells and dead biomass. We analyzed ribosomal DNA (rDNA) and ribosomal RNA (rRNA) coextracted from 48 soil samples collected from a manipulated snow depth experiment in two distinct vegetation types in Svalbard, in the High Arctic. Our main goal was to compare if the rDNA and rRNA metabarcoding templates produced congruent results that would lead to consistent ecological interpretation. Data derived from both rDNA and rRNA clustered according to vegetation types. Different sets of environmental variables explained the community composition based on the metabarcoding template. rDNA and rRNA-derived community composition of symbiotrophs and saprotrophs, unlike pathotrophs, clustered together in a similar way as when the community composition was analyzed using all OTUs in the study. Mean OTU richness was higher for rRNA, especially in symbiotrophs. The metabarcoding template was more important than vegetation type in explaining differences in richness. The proportion of symbiotrophic, saprotrophic and functionally unassigned reads differed between rDNA and rRNA, but showed similar trends. There was no evidence for increased snow depth influence on fungal community composition or richness. Our findings suggest that template choice may be especially important for estimating biodiversity, such as richness and relative abundances, especially in Helotiales and Agaricales, but not for inferring community composition. Differences in study results originating from rDNA or rRNA may directly impact the ecological conclusions of one’s study, which could potentially lead to false conclusions on the dynamics of microbial communities in a rapidly changing Arctic

Diversity and seasonal development of large zooplankton along physical gradients in the Arctic Barents Sea

Due to ongoing climate change, a new Arctic Ocean ecosystem is emerging. Within the framework of the Nansen Legacy project, we investigated the community composition of the large zooplankton and its seasonal development along a latitudinal gradient in the northern Barents Sea. Total biomass was maximal in summer and early winter, and minimal in spring, with copepods contributing considerably in all seasons. Euphausiids represented a minor fraction of the biomass, whereas chaetognaths and other gelatinous zooplankton contributed substantially to the sampled zooplankton at all stations, particularly in winter. Amphipod biomass was high in early winter, but otherwise low. Temperature in the water column interior and bottom-depth had the highest explanatory power for the community composition of the large zooplankton, both revealing the same distinct Atlantic and Arctic domains along the studied section. The continental shelf of the northern Barents Sea had an Arctic signature and was in terms of biomass characterized by a dominance of cold-water species, such as Themisto libellula, and Calanus glacialis. The copepod Calanus hyperboreus was the dominant over the continental slope. Locations at the southern and northern end of the studied section were influenced by Atlantic Water (at intermediate depth at the northern stations), and contained a mixture of temperate species, deep-water species, and sympagic amphipods in northern ice-covered waters. In the northern Barents Sea, a seasonal change was observed in the biomass fractions of different zooplankton feeding guilds, with dominance of herbivores in summer and carnivores in winter. This suggests switching between bottom-up and top-down control through the year. On the continental slope, species that are typically considered omnivores seemed to increase in importance. The role of seasonally changing food preferences to bridge periods outside of the main primary production season is discussed in light of ecosystem resilience to the expected changes in the Arctic Ocean.publishedVersio

Variability and decadal trends in the Isfjorden (Svalbard) ocean climate and circulation – An indicator for climate change in the European Arctic

Isfjorden, a broad Arctic fjord in western Spitsbergen, has shown significant changes in hydrography and inflow of Atlantic Water (AW) the last decades that only recently have been observed in the Arctic Ocean north of Svalbard. Variability and trends in this fjord’s climate and circulation are therefore analysed from observational and reanalysis data during 1987 to 2017. Isfjorden experienced a shift in summer ocean structure in 2006, from AW generally in the bottom layer to AW (with increasing thickness) higher up in the water column. This shift, and a concomitant shift to less fast ice in Isfjorden are linked to positive trends in the mean sea surface temperature (SST) and volume weighted mean temperature (VT) in winter (SSTw/VTw: 0.7 ± 0.1/0.9 ± 0.3 °C 10 yr−1) and summer (SSTS/VTS: 0.7 ± 0.1/0.6 ± 0.1 °C 10 yr−1). Hence, the local mean air temperature shows similar trends in winter (1.9 ± 0.4 °C 10 yr−1) and summer (0.7 ± 0.1 °C 10 yr−1). Positive trends in volume weighted mean salinity in winter (0.21 ± 0.06 10 yr−1) and summer (0.07 ± 0.05 10 yr−1) suggest increased AW advection as a main reason for Isfjorden’s climate change. Local mean air temperature correlates significantly with sea ice cover, SST, and VT, revealing the fjord’s impact on the local terrestrial climate. In line with the shift in summer ocean structure, Isfjorden has changed from an Arctic type fjord dominated by Winter Deep and Winter Intermediate thermal and haline convection, to a fjord dominated by deep thermal convection of Atlantic type water (Winter Open). AW indexes for the mouth and Isfjorden proper show that AW influence has been common in winter over the last decade. Alternating occurrence of Arctic and Atlantic type water at the mouth mirrors the geostrophic control imposed by the Spitsbergen Polar Current (carrying Arctic Water) relative to the strength of the Spitsbergen Trough Current (carrying AW). During high AW impact events, Atlantic type water propagates into the fjord according to the cyclonic circulation along isobaths corresponding to the winter convection. Tides play a minor role in the variance in the currents, but are important in the side fjords where exchange with the warmer Isfjorden proper occurs in winter. This study demonstrates that Isfjorden and its ocean climate can be used as an indicator for climate change in the Arctic Ocean. The used methods may constitute a set of helpful tools for future studies also outside the Svalbard Archipelago.publishedVersio

A genetic fingerprint of Amphipoda from Icelandic waters – the baseline for further biodiversity and biogeography studies

Source at https://doi.org/10.3897/zookeys.731.19931.Amphipods constitute an abundant part of Icelandic deep-sea zoobenthos yet knowledge of the diversity of this fauna, particularly at the molecular level, is scarce. The present work aims to use molecular methods to investigate genetic variation of the Amphipoda sampled during two IceAGE collecting expeditions. The mitochondrial cytochrome oxidase subunit 1 (COI) of 167 individuals originally assigned to 75 morphospecies was analysed. These targeted morhospecies were readily identifiable by experts using light microscopy and representative of families where there is current ongoing taxonomic research. The study resulted in 81 Barcode Identity Numbers (BINs) (of which >90% were published for the first time), while Automatic Barcode Gap Discovery revealed the existence of 78 to 83 Molecular Operational Taxonomic Units (MOTUs). Six nominal species (Rhachotropis helleri, Arrhis phyllonyx, Deflexilodes tenuirostratus, Paroediceros propinquus, Metopa boeckii, Astyra abyssi) appeared to have a molecular variation higher than the 0.03 threshold of both p-distance and K2P usually used for amphipod species delineation. Conversely, two Oedicerotidae regarded as separate morphospecies clustered together with divergences in the order of intraspecific variation. The incongruence between the BINs associated with presently identified species and the publicly available data of the same taxa was observed in case of Paramphithoe hystrix and Amphilochus manudens. The findings from this research project highlight the necessity of supporting molecular studies with thorough morphology species analyses