Stratigraphic distributions of genera and species of Neogene to Recent Caribbean reef corals

To document evolutionary patterns in late Cenozoic Caribbean reef corals, we compiled composite stratigraphic ranges of 49 genera and 175 species using Neogene occurrences in the Cibao Valley sequence of the northern Dominican Republic and faunal lists for 24 Miocene to Recent sites across the Caribbean region. This new compilation benefits in particular from increased sampling at late Miocene to early Pleistocene sites and from increased resolution and greater taxonomic consistency provided by the use of morphometric procedures in species recognition. Preliminary examination and quantitative analysis of origination and extinction patterns suggest that a major episode of turnover took place between 4 and 1 Ma during Plio-Pleistocene time. During the episode, extinctions were approximately simultaneous in species of all reef-building families, except the Mussidae. Most strongly affected were the Pocilloporidae (Stylophora and Pocillopora), Agariciidae (Pavona and Gardineroseris), and free-living members of the Faviidae and Meandrinidae. At the genus level, mono- and paucispecific as well as more speciose genera became regionally extinct. Many of the extinct genera live today in the Indo-Pacific region, and some are important components of modern eastern Pacific reefs. Global extinctions were concentrated in free-living genera. During the turnover episode, no new genera or higher taxa arose. Instead, new species originated within the surviving Caribbean genera at approximately the same time as the extinctions, including many dominant modern Caribbean reef-building corals (e.g., Acropora palmata and the Montastraea annularis complex). Excluding this episode, the taxonomic composition of the Caribbean reef-coral fauna remained relatively unchanged during the Neogene. Minor exceptions include: 1) high originations in the Agariciidae and free-living corals during late Miocene time; and 2) regional or global extinctions of several important Oligocene Caribbean reef builders during early to middle Miocene tim

The quantitative genetics of incipient speciation: Heritability and genetic correlations of skeletal traits in populations of diverging favia fragum ecomorphs

Recent speciation events provide potential opportunities to understand the microevolution of reproductive isolation. We used a marker-based approach and a common garden to estimate the additive genetic variation in skeletal traits in a system of two ecomorphs within the coral species Favia fragum: a Tall ecomorph that is a seagrass specialist, and a Short ecomorph that is most abundant on coral reefs. Considering both ecomorphs, we found significant narrow-sense heritability (h 2) in a suite of measurements that define corallite architecture, and could partition additive and nonadditive variation for some traits. We found positive genetic correlations for homologous height and length measurements among different types of vertical plates (costosepta) within corallites, but negative correlations between height and length within, as well as between costosepta. Within ecomorphs, h 2 estimates were generally lower, compared to the combined ecomorph analysis. Marker-based estimates of h 2 were comparable to broad-sense heritability (H) obtained from parent-offspring regressions in a common garden for most traits, and similar genetic co-variance matrices for common garden and wild populations may indicate relatively small G × E interactions. The patterns of additive genetic variation in this system invite hypotheses of divergent selection or genetic drift as potential evolutionary drivers of reproductive isolation. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution

High coral diversity is coupled with reef-building capacity during the Late Oligocene Warming Event (Castro Limestone, Salento Peninsula, S Italy)

The Oligocene, well known as the apex of Cenozoic reef growth, is a crucial period of time to investigate the mutual relationship between coral reef construction and coral diversity and their link with palaeoclimate and palaeoenvironmental changes. Here we provide a complete characterization of the upper Oligocene reef complex of the Castro Limestone (Salento Peninsula, S Italy), which is one of the best-preserved Oligocene coral reefs of the Mediterranean region. By combining facies analysis with the first detailed characterization of its coral fauna, we show that the Castro Limestone has both a rich scleractinian coral fauna (25 genera and 41 species) and a large reef volume, and it represents a luxuriant fringing reef formed within the euphotic zone in clear water conditions facing the open sea. The coral fauna differs both in its composition and in its proportions among reef palaeoenvironments, ranging from the shallow back reef to the fore reef slope, and its stratigraphic and palaeogeographic distribution testifies to the persistence of a cosmopolitan Tethyan fauna in Oligocene time, with the Mediterranean and Indo-Pacific provinces being more closely connected than the Mediterranean and the Caribbean. The age of the Castro Limestone is here reassigned to the middle-late Chattian, which coincides with the Late Oligocene Warming Event (LOWE) when atmospheric CO2 values declined. We suggest that the strong reef-building capacity of the Castro Limestone, coupled with high coral diversity, was not hampered by warming conditions but most probably promoted by the reduced pCO2 and a suitable local/regional physiographic setting

HIGH CORAL DIVERSITY IS COUPLED WITH REEF-BUILDING CAPACITY DURING THE LATE OLIGOCENE WARMING EVENT (CASTRO LIMESTONE, SALENTO PENINSULA, S ITALY)

The Oligocene, well known as the apex of Cenozoic reef growth, is a crucial period of time to investigate the mutual relationship between coral reef construction and coral diversity and their link with palaeoclimate and palaeoenvironmental changes. Here we provide a complete characterization of the Upper Oligocene reef complex of the Castro Limestone (Salento Peninsula, S Italy), which is one of the best-preserved Oligocene coral reefs of the Mediterranean region. By combining facies analysis with the first detailed characterization of its coral fauna, we show that the Castro Limestone has both a rich scleractinian coral fauna (25 genera and 41 species) and a large reef volume, and it represents a luxuriant fringing reef formed within the euphotic zone in clear water conditions facing the open sea. The coral fauna differs both in its composition and in its proportions among reef palaeoenvironments, ranging from the shallow back reef to the fore reef slope, and its stratigraphic and palaeogeographic distribution testifies to the persistence of a cosmopolitan Tethyan fauna in Oligocene time, with the Mediterranean and Indo-Pacific provinces being more closely connected than the Mediterranean and the Caribbean. The age of the Castro Limestone is here reassigned to the middle-late Chattian, which coincides with the Late Oligocene Warming Event (LOWE) when atmospheric CO2 values declined. We suggest that the strong reef-building capacity of the Castro Limestone, coupled with high coral diversity, was not hampered by warming conditions but most probably promoted by the reduced pCO2 and a suitable local/regional physiographic setting

A Pareto-improving Minimum Wage

Abstract Background Even with well-known sampling biases, the fossil record is key to understanding macro-evolutionary patterns. During the Miocene to Pleistocene in the Caribbean Sea, the fossil record of scleractinian corals shows a remarkable period of rapid diversification followed by massive extinction. Here we combine a time-calibrated molecular phylogeny based on three nuclear introns with an updated fossil stratigraphy to examine patterns of radiation and extinction in Caribbean corals within the traditional family Faviidae. Results Concatenated phylogenetic analysis showed most species of Caribbean faviids were monophyletic, with the exception of two Manicina species. The time-calibrated tree revealed the stem group originated around the closure of the Tethys Sea (17.0 Ma), while the genus Manicina diversified during the Late Miocene (8.20 Ma), when increased sedimentation and productivity may have favored free-living, heterotrophic species. Reef and shallow water specialists, represented by Diploria and Favia, originate at the beginning of the Pliocene (5 – 6 Ma) as the Isthmus of Panama shoaled and regional productivity declined. Conclusions Later origination of the stem group than predicted from the fossil record corroborates the hypothesis of morphological convergence in Diploria and Favia genera. Our data support the rapid evolution of morphological and life-history traits among faviid corals that can be linked to Mio-Pliocene environmental changes.</p

Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

Modern hard corals (Class Hexacorallia; Order Scleractinia) are widely studied because of their fundamental role in reef building and their superb fossil record extending back to the Triassic. Nevertheless, interpretations of their evolutionary relationships have been in flux for over a decade. Recent analyses undermine the legitimacy of traditional suborders, families and genera, and suggest that a non-skeletal sister clade (Order Corallimorpharia) might be imbedded within the stony corals. However, these studies either sampled a relatively limited array of taxa or assembled trees from heterogeneous data sets. Here we provide a more comprehensive analysis of Scleractinia (127 species, 75 genera, 17 families) and various outgroups, based on two mitochondrial genes (cytochrome oxidase I, cytochrome b), with analyses of nuclear genes (ßtubulin, ribosomal DNA) of a subset of taxa to test unexpected relationships. Eleven of 16 families were found to be polyphyletic. Strikingly, over one third of all families as conventionally defined contain representatives from the highly divergent "robust" and "complex" clades. However, the recent suggestion that corallimorpharians are true corals that have lost their skeletons was not upheld. Relationships were supported not only by mitochondrial and nuclear genes, but also often by morphological characters which had been ignored or never noted previously. The concordance of molecular characters and more carefully examined morphological characters suggests a future of greater taxonomic stability, as well as the potential to trace the evolutionary history of this ecologically important group using fossils

Formation of the Isthmus of Panama

The formation of the Isthmus of Panama stands as one of the greatest natural events of the Cenozoic, driving profound biotic transformations on land and in the oceans. Some recent studies suggest that the Isthmus formed manymillions of years earlier than the widely recognized age of approximately 3 million years ago (Ma), a result that if true would revolutionize our understanding of environmental, ecological, and evolutionary change across the Americas. To bring clarity to the question of when the Isthmus of Panama formed, we provide an exhaustive review and reanalysis of geological, paleontological, and molecular records. These independent lines of evidence converge upon a cohesive narrative of gradually emerging land and constricting seaways,withformationof theIsthmus of Panama sensustricto around 2.8 Ma. The evidence used to support an older isthmus is inconclusive, and we caution against the uncritical acceptance of an isthmus before the Pliocene.Facultad de Ciencias Naturales y Muse

Measurement of the t(t)over-bar production cross section in p(p)over-bar collisions at root s=1.96 TeV

We present a measurement of the top quark pair production cross section in pp̄ collisions at s=1.96TeV using 318pb-1 of data collected with the Collider Detector at Fermilab. We select tt̄ decays into the final states eν+jets and μν+jets, in which at least one b quark from the t-quark decays is identified using a secondary vertex-finding algorithm. Assuming a top quark mass of 178GeV/c2, we measure a cross section of 8.7±0.9(stat)-0. 9+1.1(syst)pb. We also report the first observation of tt̄ with significance greater than 5σ in the subsample in which both b quarks are identified, corresponding to a cross section of 10.1-1.4+1.6(stat)-1.3+2.0(syst) pb. © 2006 The American Physical Society

Chemical and protein structural basis for biological crosstalk between PPARα and COX enzymes

We have previously validated a probabilistic framework that combined computational approaches for predicting the biological activities of small molecule drugs. Molecule comparison methods included molecular structural similarity metrics and similarity computed from lexical analysis of text in drug package inserts. Here we present an analysis of novel drug/target predictions, focusing on those that were not obvious based on known pharmacological crosstalk. Considering those cases where the predicted target was an enzyme with known 3D structure allowed incorporation of information from molecular docking and protein binding pocket similarity in addition to ligand-based comparisons. Taken together, the combination of orthogonal information sources led to investigation of a surprising predicted relationship between a transcription factor and an enzyme, specifically, PPARα and the cyclooxygenase enzymes. These predictions were confirmed by direct biochemical experiments which validate the approach and show for the first time that PPARα agonists are cyclooxygenase inhibitors