Groundwater in Cretaceous carbonates: KG@B field trip 21st June 2015

The Upper Cretaceous Chalk of southern England is the UK’s most important aquifer, providing more than 75% of the public supply for southeast England, including London. The aquifer also sustains rivers and wetlands, and their associated groundwater dependent ecosystems. However, the aquifer is facing a multitude of threats including over-abstraction, nitrate pollution, and climate change. The Chalk is a complex aquifer in which groundwater flow is through the matrix, fractures and karstic dissolutional voids. The Chalk matrix has a porosity of around 35% (Bloomfield et al., 1995). The matrix is thought to provide an important contribution to storage, although the size of the pore throats is very small, and therefore the permeability is very low (Price et al., 1993). The average permeability of 977 core samples was only 6.3 x 10-4 m/day (Allen et al., 1997). The matrix is particularly important in solute transport, because solutes move between the matrix and the more permeable parts of the aquifer via diffusion (Foster 1975). The unmodified fracture network provides an important contribution to storage and flow, and has a hydraulic conductivity of about 0.1 m/d, and a transmissivity of about 20 m2/day (Price, 1987). However, it is the dissolutionally enlarged fissures and conduits that make the Chalk such a good aquifer. The median transmissivity from 2100 pumping tests is 540 m2/day, and the 25th and 75th percentiles are 190 and 1500 m2/day respectively (MacDonald and Allen, 2001). Borehole packer testing, logging and imaging have shown that most of this transmissivity comes from a small number of dissolutional voids (e.g. Tate et al., 1970; Schurch and Buckley, 2002). Laterally extensive lithostratigraphical horizons including marl seams, bedding planes, sheet and tabular flint bands, and hard-grounds have an important influence on these groundwater flows. They are all horizons where downward percolation of water may be impeded. Dissolution often occurs where flow is concentrated along these horizons, creating conduits or fissures, especially where they are intersected by joint sets

Improved fidelity of triggered entangled photons from single quantum dots

We demonstrate the on-demand emission of polarisation-entangled photon pairs from the biexciton cascade of a single InAs quantum dot embedded in a GaAs/AlAs planar microcavity. Improvements in the sample design blue shifts the wetting layer to reduce the contribution of background light in the measurements. Results presented show that >70% of the detected photon pairs are entangled. The high fidelity of the (|HxxHx>+|VxxVx>)/2^0.5 state that we determine is sufficient to satisfy numerous tests for entanglement. The improved quality of entanglement represents a significant step towards the realisation of a practical quantum dot source compatible with applications in quantum information.Comment: 9 pages. Paper is available free of charge at http://www.iop.org/EJ/abstract/1367-2630/8/2/029/, see also 'A semiconductor source of triggered entangled photon pairs', R. M. Stevenson et al., Nature 439, 179 (2006

Effects of maternal, gestational, and perinatal variables on neonatal line width observed in a modern UK birth cohort

OBJECTIVES: The objective of this study was to explore potential relationships between neonatal line (NNL) width and early life history variables such as maternal health, gestation, the birth process, and perinatal health. MATERIALS AND METHODS: Histological thin sections of deciduous canines were studied from 71 children from the Avon Longitudinal Study of Parents and Children (ALSPAC). The width of the NNL was measured in three locations on the tooth crown using spatial mapping techniques (ArcGIS) from digital images from an Olympus VS-120 microscope. Life history variables were collected prospectively through a combination of clinical observations and questionnaires. RESULTS: Infants born late term or post term had narrower neonatal lines than those born prematurely or at full term. Infants born in Autumn (September to November) had narrower NNLs than those born at other times of year. NNLs in infants born to mothers with hypertension were wider than those without. Infants resuscitated at birth or born to obese mothers had narrower NNLs than those that were not. There was no association between NNL width and either the type or duration of delivery. DISCUSSION: The NNL in enamel is an irregular accentuated line, but the factors underlying its formation and width remain unclear. In contrast to some previous studies, we found no association between wider NNLs and long or difficult births. Instead, we found that the width of the neonatal line NNL varied in relation to parameters that reflected the prenatal environment and length of gestation

Seasonal nutritional status in Norway lobsters, Nephrops norvegicus (L.): Are females nutritionally compromised over the winter? (Forthcoming)

Norway lobsters, Nephrops norvegicus, are sediment-dwelling decapod crustaceans that excavate burrows from which they make short excursions to feed by predation and scavenging. The females of this species are known to reside within their burrows for an extended period of time over the winter while brooding their eggs. The aim of this study was to assess the likelihood of these females being able to feed during this brooding period. Biophysical and biochemical measurements that had previously been shown to change with starvation under laboratory conditions in male N. norvegicus were taken for female N. norvegicus under similar conditions. These measurements were also compared in both sexes obtained from monthly trawl samples from the Clyde Sea Area, Scotland, UK, together with trawl composition data. The laboratory study showed that the hepatosomatic index, and the copper, lipid and water content of the hepatopancreas can be used as indicators of the state of starvation in females, as in males. In the wild, both sexes have reduced nutritional status during the winter, but not to the degree seen in animals starved for 20 weeks in aquarium trials. This study does not support the hypothesis that females cease feeding over winter, during their brooding period. Firstly, some females were unable to sustain ovary development during starvation under controlled conditions, contrary to field observations. Secondly, field data suggests that there is no sex-specific reduction in nutritional status

Selection for increased male size predicts variation in sexual size dimorphism among fish species

Variation in the degree of sexual size dimorphism (SSD) among taxa is generally considered to arise from differences in the relative intensity of male-male competition and fecundity selection. One might predict, therefore, that SSD will vary systematically with (1) the intensity of sexual selection for increased male size, and (2) the intensity of fecundity selection for increased female size. To test these two fundamental hypotheses, we conducted a phylogenetic comparative analysis of SSD in fish. Specifically, using records of body length at first sexual maturity from FishBase, we quantified variation in the magnitude and direction of SSD in more than 600 diverse freshwater and marine fish species, from sticklebacks to sharks. Although female-biased SSD was common, and thought to be driven primarily by fecundity selection, variation in SSD was not dependent on either the allometric scaling of reproductive energy output or fecundity in female fish. Instead, systematic patterns based on habitat and life-history characteristics associated with varying degrees of male-male competition and paternal care strongly suggest that adaptive variation in SSD is driven by the intensity of sexual selection for increased male size

Karst hydrogeology of the Chalk and implications for groundwater protection

The Chalk is an unusual karst aquifer with limited cave development, but extensive networks of smaller solutional conduits and fissures enabling rapid groundwater flow. Small-scale karst features (stream sinks, dolines, dissolution pipes, and springs) are common, with hundreds of stream sinks recorded. Tracer velocities from 27 connections between stream sinks and springs have median and mean velocities of 4700 and 4600 m d−1. Tests to abstraction boreholes also demonstrate very rapid velocities of thousands of metres per day. Natural gradient tests from observation boreholes have rapid velocities of hundreds of metres per day. There is strong geological control on karst with dissolution focused on stratigraphical inception horizons. Surface karst features are concentrated near the Paleogene boundary, or where thin superficial cover occurs, but rapid groundwater flow is also common in other areas. The Chalk has higher storage and contaminant attenuation than classical karst, but recharge, storage and flow are influenced by karst. Point recharge through stream sinks, dolines, losing rivers, vertical solutional fissures, and soakaways enables rapid unsaturated zone flow. Saturated zone networks of solutional fissures and conduits create vulnerability to subsurface activities, and enable long distance transport of point source and diffuse pollutants, which may be derived from outside modelled catchment areas and source protection zones

Reference-based sensitivity analysis for time-to-event data.

The analysis of time-to-event data typically makes the censoring at random assumption, ie, that-conditional on covariates in the model-the distribution of event times is the same, whether they are observed or unobserved (ie, right censored). When patients who remain in follow-up stay on their assigned treatment, then analysis under this assumption broadly addresses the de jure, or "while on treatment strategy" estimand. In such cases, we may well wish to explore the robustness of our inference to more pragmatic, de facto or "treatment policy strategy," assumptions about the behaviour of patients post-censoring. This is particularly the case when censoring occurs because patients change, or revert, to the usual (ie, reference) standard of care. Recent work has shown how such questions can be addressed for trials with continuous outcome data and longitudinal follow-up, using reference-based multiple imputation. For example, patients in the active arm may have their missing data imputed assuming they reverted to the control (ie, reference) intervention on withdrawal. Reference-based imputation has two advantages: (a) it avoids the user specifying numerous parameters describing the distribution of patients' postwithdrawal data and (b) it is, to a good approximation, information anchored, so that the proportion of information lost due to missing data under the primary analysis is held constant across the sensitivity analyses. In this article, we build on recent work in the survival context, proposing a class of reference-based assumptions appropriate for time-to-event data. We report a simulation study exploring the extent to which the multiple imputation estimator (using Rubin's variance formula) is information anchored in this setting and then illustrate the approach by reanalysing data from a randomized trial, which compared medical therapy with angioplasty for patients presenting with angina

Luminous Infrared Galaxies with the Submillimeter Array: I. Survey Overview and the Central Gas to Dust Ratio

We present new data obtained with the Submillimeter Array for a sample of fourteen nearby luminous and ultraluminous infrared galaxies. The galaxies were selected to have luminosity distances D < 200 Mpc and far-infrared luminosities log(L_FIR) > 11.4. The galaxies were observed with spatial resolutions of order 1 kpc in the CO J=3-2, CO J=2-1, 13CO J=2-1, and HCO+ J=4-3 lines as well as the continuum at 880 microns and 1.3 mm. We have combined our CO and continuum data to measure an average gas-to-dust mass ratio of 120 +/- 28 (rms deviation 109) in the central regions of these galaxies, very similar to the value of 150 determined for the Milky Way. This similarity is interesting given the more intense heating from the starburst and possibly accretion activity in the luminous infrared galaxies compared to the Milky Way. We find that the peak H_2 surface density correlates with the far-infrared luminosity, which suggests that galaxies with higher gas surface densities inside the central kiloparsec have a higher star formation rate. The lack of a significant correlation between total H_2 mass and far-infrared luminosity in our sample suggests that the increased star formation rate is due to the increased availability of molecular gas as fuel for star formation in the central regions. In contrast to previous analyses by other authors, we do not find a significant correlation between central gas surface density and the star formation efficiency, as trace by the ratio of far-infrared luminosity to nuclear gas mass. Our data show that it is the star formation rate, not the star formation efficiency, that increases with increasing central gas surface density in these galaxies.Comment: 66 pages, 39 figures, aastex preprint format; to be published in ApJ Supplements. Version of paper with full resolution figures available at http://www.physics.mcmaster.ca/~wilson/www_xfer/ULIRGS_publi

Antithymocyte Globulin Plus G-CSF Combination Therapy Leads to Sustained Immunomodulatory and Metabolic Effects in a Subset of Responders With Established Type 1 Diabetes.

Low-dose antithymocyte globulin (ATG) plus pegylated granulocyte colony-stimulating factor (G-CSF) preserves β-cell function for at least 12 months in type 1 diabetes. Herein, we describe metabolic and immunological parameters 24 months following treatment. Patients with established type 1 diabetes (duration 4-24 months) were randomized to ATG and pegylated G-CSF (ATG+G-CSF) (N = 17) or placebo (N = 8). Primary outcomes included C-peptide area under the curve (AUC) following a mixed-meal tolerance test (MMTT) and flow cytometry. "Responders" (12-month C-peptide ≥ baseline), "super responders" (24-month C-peptide ≥ baseline), and "nonresponders" (12-month C-peptide &lt; baseline) were evaluated for biomarkers of outcome. At 24 months, MMTT-stimulated AUC C-peptide was not significantly different in ATG+G-CSF (0.49 nmol/L/min) versus placebo (0.29 nmol/L/min). Subjects treated with ATG+G-CSF demonstrated reduced CD4+ T cells and CD4+/CD8+ T-cell ratio and increased CD16+CD56hi natural killer cells (NK), CD4+ effector memory T cells (Tem), CD4+PD-1+ central memory T cells (Tcm), Tcm PD-1 expression, and neutrophils. FOXP3+Helios+ regulatory T cells (Treg) were elevated in ATG+G-CSF subjects at 6, 12, and 18 but not 24 months. Immunophenotyping identified differential HLA-DR expression on monocytes and NK and altered CXCR3 and PD-1 expression on T-cell subsets. As such, a group of metabolic and immunological responders was identified. A phase II study of ATG+G-CSF in patients with new-onset type 1 diabetes is ongoing and may support ATG+G-CSF as a prevention strategy in high-risk subjects

Discovery of Novel Materials with Broad Resistance to Bacterial Attachment Using Combinatorial Polymer Microarrays

A new class of bacteria-attachment-resistant materials is discovered using a multi-generation polymer microarray methodology that reduces bacterial attachment by up to 99.3% compared with a leading commercially available silver hydrogel anti-bacterial material. The coverage of three bacterial species, Pseudomonas aeruginosa, Staphylococcus aureus, and uropathogenic Escherichia coli is assessed.National Institutes of Health (U.S.) (Grant R01 DE016516