A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.

Human leukocyte antigens (HLA) are an important family of genes involved in the immune system. Their primary function is to allow the host immune system to be able to distinguish between self and non-self peptides-e.g. derived from invading pathogens. However, these genes have also been implicated in immune-mediated adverse drug reactions (ADRs), presenting a problem to patients, clinicians and pharmaceutical companies. We have previously developed the Allele Frequency Net Database (AFND) that captures the allelic and haplotype frequencies for these HLA genes across many healthy populations from around the world. Here, we report the development and release of the HLA-ADR database that captures data from publications where HLA alleles and haplotypes have been associated with ADRs (e.g. Stevens-Johnson Syndrome/toxic epidermal necrolysis and drug-induced liver injury). HLA-ADR was created by using data obtained through systematic review of the literature and semi-automated literature mining. The database also draws on data already present in AFND allowing users to compare and analyze allele frequencies in both ADR patients and healthy populations. The HLA-ADR database provides clinicians and researchers with a centralized resource from which to investigate immune-mediated ADRs.Database URL: http://www.allelefrequencies.net/hla-adr/

Hepatitis A, B and C prevalence among transgender women and travestis in five Brazilian capitals between 2019-2021.

OBJECTIVE: To estimate the prevalence and factors associated with hepatitis A, B, and C in transgender women and travestis's networks, in 5 regions of Brazil. METHODS: This cross-sectional study includedtransgender women and travestis in five Brazilian capitals (Campo Grande, Manaus, Porto Alegre, Salvador, and São Paulo), between December/2019 and July/2021. All samples were subjected to detection of serological markers of hepatitis virus A (HAV), B (HBV), and C (HCV) infections through rapid tests and chemiluminescent microparticle immunoassays. Positive samples in the screening tests were submitted to detect HBV DNA and HCV-RNA by real-time PCR and genotyped by Sanger sequencing. RESULTS: Analysis of 1,317 samples showed network prevalence rates of 69.1%, 25.1%, and 1.5% for HAV, HBV, and HCV exposure, respectively. A high susceptibility rate to HBV infection (35.7%) and low prevalence of vaccine response markers (40%) were also observed. Age greater than 26 years, self-declared black/brown skin color, having only primary education, history of incarceration, and use of a condom in the last sexual intercourse with a casual partner were associated with total anti-HAV. Exposure to HBV was associated with age greater than 26 years, self-declared black/brown, history of being a sex worker, and incarceration. Age > 37 years, history of sexual abuse, and frequent alcohol consumption were associated with hepatitis C infection. CONCLUSION: The highest prevalence of HAV in this population was found in the North and Northeast regions, and the prevalence found was higher than that in the general population, suggesting greater vulnerability. The prevalence of HCV infection in our study was similar to that observed in the general population

Polymorphisms in the MBL2 gene are associated with the plasma levels of MBL and the cytokines IL-6 and TNF-α in severe COVID-19

IntroductionMannose-binding lectin (MBL) promotes opsonization, favoring phagocytosis and activation of the complement system in response to different microorganisms, and may influence the synthesis of inflammatory cytokines. This study investigated the association of MBL2 gene polymorphisms with the plasma levels of MBL and inflammatory cytokines in COVID-19.MethodsBlood samples from 385 individuals (208 with acute COVID-19 and 117 post-COVID-19) were subjected to real-time PCR genotyping. Plasma measurements of MBL and cytokines were performed by enzyme-linked immunosorbent assay and flow cytometry, respectively.ResultsThe frequencies of the polymorphic MBL2 genotype (OO) and allele (O) were higher in patients with severe COVID-19 (p< 0.05). The polymorphic genotypes (AO and OO) were associated with lower MBL levels (p< 0.05). IL-6 and TNF-α were higher in patients with low MBL and severe COVID-19 (p< 0.05). No association of polymorphisms, MBL levels, or cytokine levels with long COVID was observed.DiscussionThe results suggest that, besides MBL2 polymorphisms promoting a reduction in MBL levels and therefore in its function, they may also contribute to the development of a more intense inflammatory process responsible for the severity of COVID-19

Diretriz da Sociedade Brasileira de Cardiologia sobre Diagnóstico e Tratamento de Pacientes com Cardiomiopatia da Doença de Chagas

This guideline aimed to update the concepts and formulate the standards of conduct and scientific evidence that support them, regarding the diagnosis and treatment of the Cardiomyopathy of Chagas disease, with special emphasis on the rationality base that supported it.  Chagas disease in the 21st century maintains an epidemiological pattern of endemicity in 21 Latin American countries. Researchers and managers from endemic and non-endemic countries point to the need to adopt comprehensive public health policies to effectively control the interhuman transmission of T. cruzi infection, and to obtain an optimized level of care for already infected individuals, focusing on diagnostic and therapeutic opportunistic opportunities.   Pathogenic and pathophysiological mechanisms of the Cardiomyopathy of Chagas disease were revisited after in-depth updating and the notion that necrosis and fibrosis are stimulated by tissue parasitic persistence and adverse immune reaction, as fundamental mechanisms, assisted by autonomic and microvascular disorders, was well established. Some of them have recently formed potential targets of therapies.  The natural history of the acute and chronic phases was reviewed, with enhancement for oral transmission, indeterminate form and chronic syndromes. Recent meta-analyses of observational studies have estimated the risk of evolution from acute and indeterminate forms and mortality after chronic cardiomyopathy. Therapeutic approaches applicable to individuals with Indeterminate form of Chagas disease were specifically addressed. All methods to detect structural and/or functional alterations with various cardiac imaging techniques were also reviewed, with recommendations for use in various clinical scenarios. Mortality risk stratification based on the Rassi score, with recent studies of its application, was complemented by methods that detect myocardial fibrosis.  The current methodology for etiological diagnosis and the consequent implications of trypanonomic treatment deserved a comprehensive and in-depth approach. Also the treatment of patients at risk or with heart failure, arrhythmias and thromboembolic events, based on pharmacological and complementary resources, received special attention. Additional chapters supported the conducts applicable to several special contexts, including t. cruzi/HIV co-infection, risk during surgeries, in pregnant women, in the reactivation of infection after heart transplantation, and others.     Finally, two chapters of great social significance, addressing the structuring of specialized services to care for individuals with the Cardiomyopathy of Chagas disease, and reviewing the concepts of severe heart disease and its medical-labor implications completed this guideline.Esta diretriz teve como objetivo principal atualizar os conceitos e formular as normas de conduta e evidências científicas que as suportam, quanto ao diagnóstico e tratamento da CDC, com especial ênfase na base de racionalidade que a embasou. A DC no século XXI mantém padrão epidemiológico de endemicidade em 21 países da América Latina. Investigadores e gestores de países endêmicos e não endêmicos indigitam a necessidade de se adotarem políticas abrangentes, de saúde pública, para controle eficaz da transmissão inter-humanos da infecção pelo T. cruzi, e obter-se nível otimizado de atendimento aos indivíduos já infectados, com foco em oportunização diagnóstica e terapêutica. Mecanismos patogênicos e fisiopatológicos da CDC foram revisitados após atualização aprofundada e ficou bem consolidada a noção de que necrose e fibrose sejam estimuladas pela persistência parasitária tissular e reação imune adversa, como mecanismos fundamentais, coadjuvados por distúrbios autonômicos e microvasculares. Alguns deles recentemente constituíram alvos potenciais de terapêuticas. A história natural das fases aguda e crônica foi revista, com realce para a transmissão oral, a forma indeterminada e as síndromes crônicas. Metanálises recentes de estudos observacionais estimaram o risco de evolução a partir das formas aguda e indeterminada e de mortalidade após instalação da cardiomiopatia crônica. Condutas terapêuticas aplicáveis aos indivíduos com a FIDC foram abordadas especificamente. Todos os métodos para detectar alterações estruturais e/ou funcionais com variadas técnicas de imageamento cardíaco também foram revisados, com recomendações de uso nos vários cenários clínicos. Estratificação de risco de mortalidade fundamentada no escore de Rassi, com estudos recentes de sua aplicação, foi complementada por métodos que detectam fibrose miocárdica. A metodologia atual para diagnóstico etiológico e as consequentes implicações do tratamento tripanossomicida mereceram enfoque abrangente e aprofundado. Também o tratamento de pacientes em risco ou com insuficiência cardíaca, arritmias e eventos tromboembólicos, baseado em recursos farmacológicos e complementares, recebeu especial atenção. Capítulos suplementares subsidiaram as condutas aplicáveis a diversos contextos especiais, entre eles o da co-infecção por T. cruzi/HIV, risco durante cirurgias, em grávidas, na reativação da infecção após transplante cardíacos, e outros.    Por fim, dois capítulos de grande significado social, abordando a estruturação de serviços especializados para atendimento aos indivíduos com a CDC, e revisando os conceitos de cardiopatia grave e suas implicações médico-trabalhistas completaram esta diretriz.&nbsp

ATLANTIC EPIPHYTES: a data set of vascular and non-vascular epiphyte plants and lichens from the Atlantic Forest

Epiphytes are hyper-diverse and one of the frequently undervalued life forms in plant surveys and biodiversity inventories. Epiphytes of the Atlantic Forest, one of the most endangered ecosystems in the world, have high endemism and radiated recently in the Pliocene. We aimed to (1) compile an extensive Atlantic Forest data set on vascular, non-vascular plants (including hemiepiphytes), and lichen epiphyte species occurrence and abundance; (2) describe the epiphyte distribution in the Atlantic Forest, in order to indicate future sampling efforts. Our work presents the first epiphyte data set with information on abundance and occurrence of epiphyte phorophyte species. All data compiled here come from three main sources provided by the authors: published sources (comprising peer-reviewed articles, books, and theses), unpublished data, and herbarium data. We compiled a data set composed of 2,095 species, from 89,270 holo/hemiepiphyte records, in the Atlantic Forest of Brazil, Argentina, Paraguay, and Uruguay, recorded from 1824 to early 2018. Most of the records were from qualitative data (occurrence only, 88%), well distributed throughout the Atlantic Forest. For quantitative records, the most common sampling method was individual trees (71%), followed by plot sampling (19%), and transect sampling (10%). Angiosperms (81%) were the most frequently registered group, and Bromeliaceae and Orchidaceae were the families with the greatest number of records (27,272 and 21,945, respectively). Ferns and Lycophytes presented fewer records than Angiosperms, and Polypodiaceae were the most recorded family, and more concentrated in the Southern and Southeastern regions. Data on non-vascular plants and lichens were scarce, with a few disjunct records concentrated in the Northeastern region of the Atlantic Forest. For all non-vascular plant records, Lejeuneaceae, a family of liverworts, was the most recorded family. We hope that our effort to organize scattered epiphyte data help advance the knowledge of epiphyte ecology, as well as our understanding of macroecological and biogeographical patterns in the Atlantic Forest. No copyright restrictions are associated with the data set. Please cite this Ecology Data Paper if the data are used in publication and teaching events. © 2019 The Authors. Ecology © 2019 The Ecological Society of Americ

Compostos fenólicos totais e capacidade antioxidante em extrato etanólico de abóbora (Cucurbita moschata)

Objective evaluate the content of phenolic compounds and antioxidant activity in ethanolic extract of pumpkin (Cucurbita moschata). An ethanolic extract of the squash of the pumpkin Cucurbita moschata cultivated in an agroecological system was prepared. The total phenolic content, antioxidant activity by the DPPH free radical capture method (1,1-diphenyl-2-picrylhydrazyl radical) and the antioxidant capacity by the phosphomoblidene method were analyzed. The total phenolic content observed in the extract was 365.2 mg GAE 100 g-1. Antioxidant activity of 88.66% and total antioxidant capacity of 306.3% was observed. The ethanolic extract of the squash of the pumpkin Cucurbita moschata has a high total phenolic content and antioxidant potential in all the analyzed methods, being within the expected when compared to other studies on the subject.Objetivo de avaliar o teor de compostos fenólicos e a atividade antioxidante em extrato etanólico de abóbora (Cucurbita moschata). Foi elaborado um extrato etanólico da polpa da abóbora Cucurbita moschata cultivada em sistema agroecológico. Foram analisados o teor de fenólicos totais, a atividade antioxidante pelo método de captura de radicais livres DPPH (radical 1,1-diphenil-2-picrilhydrazil) e a capacidade antioxidante pelo método fosfomoblidênio. O teor de fenólicos totais observado no extrato foi de 365,2 mg GAE 100 g-1 . Foi observada atividade antioxidante de 88,66% e capacidade antioxidante total de 306,3%. O extrato etanólico da polpa da abóbora Cucurbita moschata possui um grande teor de fenólicos totais e potencial antioxidante em todos os métodos analisados, estando dentro do esperado quando comparado a outros estudos sobre o tema.Objetivo evaluar el contenido de los compuestos fenólicos y la actividad antioxidante en extracto etanólico de calabaza (Cucurbita moschata). Se elaboró un extracto etanólico de la pulpa de la calabaza Cucurbita moschata cultivada en sistema agroecológico. Se analizaron el contenido de fenólicos totales, la actividad antioxidante por el método de captura de radicales libres DPPH (radical 1,1-diphenil-2-picrilhidrazrazil) y la capacidad antioxidante por el método fosfomoblidio. El contenido de fenólicos totales observado en el extracto fue de 365,2 mg GAE 100 g-1. Se observó actividad antioxidante de 88,66% y capacidad antioxidante total del 306,3%. El extracto etranólico de la pulpa de la calabaza Cucurbita moschata posee um gran tenor de fenólicos totales y potencial antioxidante en todos los métodos analisados, estando dentro de lo esperado cuando comparado a otros estudios sobre el tema

Origins and demographic dynamics of Tupí expansion: a genetic tale

Abstract: Tupí linguistic groups display a wide geographical dispersion in South America, probably originated, as pointed by linguistic, from Madeira-Guaporé Region (MGR) in Brazil. The present study reviewed genetic data on Tupians for autosomal and uniparental (Y-chromosome and mtDNA) markers, using it to evaluate Tupians geographic origin as well as the demographic dynamics of their dispersion from a genetic point of view. Comparison of genetic variability and mtDNA haplogroups D frequencies suggests a scenario where MGR is the Tupí homeland. The relationship between five estimators of genetic variability (Thetas-S, -Pi, -m2, -H and -k) shows that Tupí groups from MGR and non-MGR experienced different patterns of demographic dynamics, with an ancient Tupí expansion in MGR, followed by dispersion to other South America regions, probably associated to depopulation/founder effect events. Furthermore, other recent depopulation events could also be detected in both regions. Finally, the dispersion seems to be related to patrilocality, as suggested by comparison of uniparental markers genetic differentiation. This genetic model of dispersion dynamics may have an important impact in the interpretation of archeological and linguistic data, allowing to test if female associated technologies, like ceramic, are more extensively shared between dispersed populations than those which are not female-exclusive

Avaliação da acessibilidade de tecnologia assistiva para surdos

RESUMO Objetivo: avaliar acessibilidade automática de tecnologia assistiva, na modalidade de curso on-line, para surdos. Método: estudo avaliativo, orientado pela etapa de Avaliação e Manutenção proposta no Modelo de Desenvolvimento de Material Educativo Digital. Utilizou-se software Avaliador e Simulador de Acessibilidade de Sítios para análise do curso on-line "Educação em Saúde Sexual e Reprodutiva: uso dos preservativos", conforme normas de acessibilidade de sítios eletrônicos nacionais e internacionais. Resultados: relatório de erros gerado pelo programa identificou, em cada módulo didático, um erro e dois avisos relacionados a dois princípios internacionais e, seis avisos envolvidos com seis recomendações nacionais. Realizou-se correção das advertências pertinentes para os surdos, sendo o curso considerado acessível pela avaliação automática. Conclusão: conclui-se que as páginas do curso foram consideradas, pelo software utilizado, adequadas aos padrões de acessibilidade na Web

Comparative cytotoxic and anti-tuberculosis activity of Aplysina caissara marine sponge crude extracts.

Three crude extracts of Aplysina caissara, a marine sponge endemic to Brazil, were tested against a hepatoma cell line and Mycobacterium tuberculosis. The results demonstrate that all extracts are toxic and capable of inhibiting cellular growth. Additionally, the extracts produced morphological aberrations and inhibited cell attachment to culture substrates. These effects were dose/time dependent. Our results also suggest that reactive oxygen species (ROS) production is not involved in the cytotoxic processes levied by the extracts employed in this study and that active metabolites are likely to be present in the polar fractions of the crude extracts. Finally, our results indicate that all three extracts exhibit a moderate anti-tuberculosis capacity, and that the removal of an extract's lipid fraction appears to diminish this activity