Evaluating the impact of culture conditions on human mesenchymal stem/stromal cell-derived exosomes through FTIR spectroscopy

In the last decade, the therapeutic effects of mesenchymal stem/stromal cells (MSCs) have been attributed to a paracrine activity exerted by extracellular vesicles secreted by MSCs, as exosomes. Their properties as intercellular communication vehicles have led to an increase interest in their use for cell-free therapeutic applications. The present work aimed to evaluate how different culture conditions, as culture medium (xenogeneic -free (XF) vs serum-containing medium), conditioning time (1, 2 and 3 days) and different MSC donors (n=6), affect the chemical characteristics of exosomes. For that, purified MSC-derived exosomes were characterized by Fourier-Transform InfraRed (FTIR) spectroscopy, a highly sensitive, fast and high throughput technique. The principal component analysis (PCA) of pre-processed FTIR spectra of purified exosomes was conducted, enabling the evaluation of the replica variance of the exosomes chemical fingerprint in a reduced dimensionality space. For that, different pre-processing methods were studied as baseline correction, standard normal variation and first and second derivative. It was observed that the chemical fingerprint of exosomes is more dependent of the medium used for MSCs cultivation than the MSC donor and conditioning days. Exosomes secreted by MSCs cultured with serum-containing medium presented a more homogenous chemical fingerprint than exosomes obtained with XF medium. Moreover, for a given medium (XF or serum-containing medium), the exosomes chemical fingerprint depends more of the MSC donor than of the conditioning days. The regression vector of the PCA enabled to identified relevant spectral bands that enabled the separation of samples in the score-plot of the previous analysis. Ratios between these spectral bands were determined, since these attenuate artifacts due to cell quantity and baseline distortions underneath each band. Statistically inference analysis of the ratios of spectral bands were conducted, by comparing the equality of the means of the populations using appropriate hypothesis tests and considering the significance level of 5%. It was possible to define ratios of spectral bands, that can be used as biomarkers, enabling the discrimination of exosomes chemical fingerprint in function of the medium used for MSC grown and the MSC donor. This work is therefore a step forward into understanding how different culture conditions and MSC donors affect MSC exosomes characteristics

Diabetes as an independent predictor of high atherosclerotic burden assessed by coronary computed tomography angiography: The coronary artery disease equivalent revisited

(1) To study the prevalence and severity of coronary artery disease (CAD) in diabetic patients. (2) To provide a detailed characterization of the coronary atherosclerotic burden, including the localization, degree of stenosis and plaque composition by coronary computed tomography angiography (CCTA). Single center prospective registry including a total of 581 consecutive stable patients (April 2011-March 2012) undergoing CCTA (Dual-source CT) for the evaluation of suspected CAD without previous myocardial infarction or revascularization procedures. Different coronary plaque burden indexes and plaque type and distribution patterns were compared between patients with (n = 85) and without diabetes (n = 496). The prevalence of CAD (any plaque; 74.1 vs. 56 %; p = 0.002) and obstructive CAD (≥50 % stenosis; 31.8 vs. 10.3 %; p<0.001) were significantly higher in diabetic patients. The remaining coronary atherosclerotic burden indexes evaluated (plaque in LM-3v-2v with prox. LAD; SIS; SSS; CT-LeSc) were also significantly higher in diabetic patients. In the per segment analysis, diabetics had a higher percentage of segments with plaque in every vessel (2.6/13.1/7.5/10.5 % for diabetics vs. 1.4/7.1/3.3/4.4 % for nondiabetics for LM, LAD, LCx, RCA respectively; p<0.001 for all) and of both calcified (19.3 vs. 9.2 %, p<0.001) and noncalcified or mixed types (14.4 vs. 7.0 %; p<0.001); the ratio of proximal-to-distal relative plaque distribution (calculated as LM/proximal vs. mid/distal/branches) was lower for diabetics (0.75 vs. 1.04; p = 0.009). Diabetes was an independent predictor of CAD and was also associated with more advanced CAD, evaluated by indexes of coronary atherosclerotic burden. Diabetics had a significantly higher prevalence of plaques in every anatomical subset and for the different plaque composition. In this report, the relative geographic distribution of the plaques within each subgroup, favored a more mid-to-distal localization in the diabetic patients

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear un derstanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5–7 vast areas of the tropics remain understudied.8–11 In the American tropics, Amazonia stands out as the world’s most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepre sented in biodiversity databases.13–15 To worsen this situation, human-induced modifications16,17 may elim inate pieces of the Amazon’s biodiversity puzzle before we can use them to understand how ecological com munities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple or ganism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region’s vulnerability to environmental change. 15%–18% of the most ne glected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lostinfo:eu-repo/semantics/publishedVersio

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time, and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space. While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes, vast areas of the tropics remain understudied. In the American tropics, Amazonia stands out as the world's most diverse rainforest and the primary source of Neotropical biodiversity, but it remains among the least known forests in America and is often underrepresented in biodiversity databases. To worsen this situation, human-induced modifications may eliminate pieces of the Amazon's biodiversity puzzle before we can use them to understand how ecological communities are responding. To increase generalization and applicability of biodiversity knowledge, it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple organism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region's vulnerability to environmental change. 15%–18% of the most neglected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lost

Avian biodiversity in multiple-use landscapes of the Brazilian Amazon

Habitat loss and degradation is the most pervasive threat to tropical biodiversity worldwide. Amazonia sits at the frontline of efforts to both improve the productivity of tropical agriculture and prevent the loss of biodiversity. To date our understanding of the biodiversity impacts of agricultural expansion in Amazonia is restricted to findings from small scale studies that typically assess the importance of a limited number of land-use types. Here we investigate local and landscape-scale responses of Amazonian avian assemblages to land-cover changes across a gradient of land-use intensity ranging from undisturbed primary forest to mechanised agriculture in 36 drainage catchments distributed across two large regions of the eastern Brazilian Amazon. We found that species richness of forest-associated birds declined progressively along this gradient, accompanied by marked shifts in assemblage composition. We found significant changes in species composition, but not richness, between primary forests that had been subject to different levels of disturbance from logging and fire. Secondary forests retained levels of species richness intermediate between primary forests and production areas, but lacked many forest-dependent species. Production areas (arable crops, cattle pastures and plantation forests) all retained far fewer species than any forest habitat, and were largely dominated by taxa commonly associated with open areas. Diversity partitioning revealed that species composition varied the most among undisturbed forest transects, and steadily decreased with increasing forest degradation and land-use intensity. Our results emphasise the importance of protecting both remaining areas of primary forest in private lands, as well as protecting the same forests from further disturbance events

The importance of riparian forest for the maintenance of bird species richness in an Atlantic Forest remnant, southern Brazil

We compared the composition and guild structure of bird communities of riparian and upland forest in an Atlantic forest reserve, the Godoy State Park (GP), in northern Paraná State, southern Brazil. Unlimited distance point counts were sampled monthly from September-December 2001, along four trails. Two trails in upland forest (TA and TB) were parallel to each other and about 300 m apart. Two trails in riparian forest (TC and TD) were along the Apertados River, about 100 m away from the river. A total of 145 species were recorded: 81 species were recorded in both upland and riparian forests, 19 species were recorded only in upland forest and 45 species were recorded exclusively in riparian forest. Among the 81 species occurring in both forest types, 18 species had significantly higher numbers of contacts in the riparian forest while only 8 species had significantly higher numbers of contacts in the upland forest. Taking into account the contacts numbers of the species the large frugivores guild was closely associated to the upland forest, while bamboo and vine-tangles insectivore, canopy insectivores, edge omnivores, ground omnivore and midstory insectivores were those more closely related to the riparian forest.<br>Comparamos a composição e a estrutura de guilda da comunidade de aves da floresta ripária e alta em uma reserva de Floresta Atlântica, o Parque Estadual Mata dos Godoy (GP), no norte do Paraná, sul do Brasil. Pontos de escutas com distância ilimitada foram realizados mensalmente de setembro-dezembro de 2001, ao longo de quatro trilhas. Duas trilhas na floresta alta (TA e TB) paralelas uma a outra e com distância de 300 m. Duas trilhas na floresta ripária (TC e TD) ao longo do Rio Apertados, distantes 100 m do rio. Um total de 145 espécies foi registrado: 81 espécies foram registradas em ambas as florestas, 19 espécies foram registradas somente na floresta alta e 45 espécies foram registradas exclusivamente na floresta ripária. Entre as 81 espécies que ocorrem nos dois tipos de florestas, 18 espécies tiveram maior número significativo de contato na floresta ripária enquanto somente 8 espécies tiveram maior número significativo de contatos na floresta alta. Considerando o número de contato das espécies, a guilda grande frugívoros foi mais relacionada com a floresta alta, enquanto as guildas insetívoros de bambu e reboleira, insetívoros de copa, onívoros de bordas, onívoros de solo e insetívoros de sub-bosque foram relacionados com a floresta ripária