Response of Methicillin-Resistant Staphylococcus aureus to Amicoumacin A

Amicoumacin A exhibits strong antimicrobial activity against methicillin-resistant Staphylococcus aureus (MRSA), hence we sought to uncover its mechanism of action. Genome-wide transcriptome analysis of S. aureus COL in response to amicoumacin A showed alteration in transcription of genes specifying several cellular processes including cell envelope turnover, cross-membrane transport, virulence, metabolism, and general stress response. The most highly induced gene was lrgA, encoding an antiholin-like product, which is induced in cells undergoing a collapse of Δψ. Consistent with the notion that LrgA modulates murein hydrolase activity, COL grown in the presence of amicoumacin A showed reduced autolysis, which was primarily caused by lower hydrolase activity. To gain further insight into the mechanism of action of amicoumacin A, a whole genome comparison of wild-type COL and amicoumacin A-resistant mutants isolated by a serial passage method was carried out. Single point mutations generating codon substitutions were uncovered in ksgA (encoding RNA dimethyltransferase), fusA (elongation factor G), dnaG (primase), lacD (tagatose 1,6-bisphosphate aldolase), and SACOL0611 (a putative glycosyl transferase). The codon substitutions in EF-G that cause amicoumacin A resistance and fusidic acid resistance reside in separate domains and do not bring about cross resistance. Taken together, these results suggest that amicoumacin A might cause perturbation of the cell membrane and lead to energy dissipation. Decreased rates of cellular metabolism including protein synthesis and DNA replication in resistant strains might allow cells to compensate for membrane dysfunction and thus increase cell survivability

Overwintering individuals of the Arctic krill Thysanoessa inermis appear tolerant to short-term exposure to low pH conditions

Areas of the Arctic Ocean are already experiencing seasonal variation in low pH/elevated pCO2 and are predicted to be the most affected by future ocean acidification (OA). Krill play a fundamental ecological role within Arctic ecosystems, serving as a vital link in the transfer of energy from phytoplankton to higher trophic levels. However, little is known of the chemical habitat occupied by Arctic invertebrate species, and of their responses to changes in seawater pH. Therefore, understanding krill’s responses to low pH conditions has important implications for the prediction of how Arctic marine communities may respond to future ocean change. Here, we present natural seawater carbonate chemistry conditions found in the late polar winter (April) in Kongsfjord, Svalbard (79°North) as well as the response of the Arctic krill, Thysanoessa inermis, exposed to a range of low pH conditions. Standard metabolic rate (measured as oxygen consumption) and energy metabolism markers (incl. adenosine triphosphate (ATP) and l-lactate) of T. inermis were examined. We show that after a 7 days experiment with T. inermis, no significant effects of low pH on MO2, ATP and l-lactate were observed. Additionally, we report carbonate chemistry from within Kongsfjord, which showed that the more stratified inner fjord had lower total alkalinity, higher dissolved inorganic carbon, pCO2 and lower pH than the well-mixed outer fjord. Consequently, our results suggest that overwintering individuals of T. inermis may possess sufficient ability to tolerate short-term low pH conditions due to their migratory behaviour, which exposes T. inermis to the naturally varying carbonate chemistry observed within Kongsfjord, potentially allowing T. inermis to tolerate future OA scenarios

Patterns in diet reveal foraging site fidelity of short-tailed shearwaters in the southeastern Bering Sea

The short-tailed shearwater Puffinus tenuirostris is an apex predator in the southeastern Bering Sea ecosystem. During 1997 to 1999, a period of great variability in the Bering Sea, we used a multi-pronged approach to study transfer of carbon and nitrogen to short-tailed shearwaters through analysis of stomach contents of birds collected while foraging, and stable isotope and fatty acid composition of tissues from shearwaters and their prey. Two conclusions result from these 3 analyses of feeding history. First, short-tailed shearwaters demonstrated localized differences in diet with respect to sampling location and season, indicating that shearwaters feed in discrete locations long enough (several weeks) to reflect regional differences in prey availability. Second, elevated δ15N levels (∼1 to 2‰) in the liver of shearwaters in the fall of 1997 and 1998 were likely a response to nutritional stress and overturn of nutrients in the tissues of birds or elevated isotope levels in tissues of prey, rather than an increase in the trophic level of the diet. Over the 3 yr period, shearwater diets switched from adult euphausiids Thysanoessa raschii and T. inermis (usually females with spermatophores) taken in spring to an increase in the amount of fish (Pacific sandlance Ammodytes hexapterus), juvenile Gadidae fishes and larval walleye pollock Theragra chalcograma particularly in fall (1997 excepted). For each location and year, there was a consistent trend in isotopic values, with an increase of 3 to 5‰ for δ15N and 1 to 3‰ for δ13C between shearwaters and their primary prey. The resolution of our sampling techniques indicates little movement of shearwater flocks among sample locations for periods of up to several weeks. © Inter-Research 2006

Anomalous conditions in the south-eastern Bering Sea, 1997: Nutrients, phytoplankton and zooplankton

Anomalies in the regional weather over the southeastern Bering Sea during spring and summer of 1997 resulted in significant differences in nutrient availability, phytoplankton species composition, and zooplankton abundance over the continental shelf as compared with measurements in the 1980s. Calm winds and the reduction of cloud cover in spring and summer produced a very shallow mixed layer in which nitrate and silicate were depleted after an April diatom bloom. High submarine light levels allowed subsequent phytoplankton growth below the pycnocline and eventual depletion of nitrate from the water column to depths of 70 m or more. Thus, total new production during 1997 may have exceeded that of previous years when nitrate was not depleted below the pycnocline. A bloom of the coccolithophorid, Emiliania huxleyi, was observed in early July in the warm, nutrient-depleted waters over the middle and inner shelf. Emiliania huxleyi concentrations reached 4.5 × 106 cells L-1 by September, and the bloom persisted through the autumn. There was evidence for increased abundance of some species of copepods in 1997 as compared with data from the middle domain in June 1981. The abundance of adult and juvenile euphausiids in 1997 was statistically similar to values measured in 1980 and 1981. However, near-surface swarms were rarely observed on the inner shelf in August-September 1997. Lack of euphausiid availability in the upper water column may partially explain the August-September mass mortality of planktivorous short-tailed shearwaters (Puffinus tenuirostris) observed on the inner shelf