Estimation of protein folding probability from equilibrium simulations

The assumption that similar structures have similar folding probabilities ($p_{fold}$) leads naturally to a procedure to evaluate $p_{fold}$ for every snapshot saved along an equilibrium folding-unfolding trajectory of a structured peptide or protein. The procedure utilizes a structurally homogeneous clustering and does not require any additional simulation. It can be used to detect multiple folding pathways as shown for a three-stranded antiparallel $\beta$-sheet peptide investigated by implicit solvent molecular dynamics simulations.Comment: 7 pages, 4 figures, supplemetary material

New approach of fragment charge correlations in 129Xe+(nat)Sn central collisions

A previous analysis of the charge (Z) correlations in the $\Delta Z-$ plane for Xe+Sn central collisions at 32 MeV/u has shown an enhancement in the production of equally sized fragments (low $\Delta Z$) which was interpreted as an evidence for spinodal decomposition. However the signal is weak and rises the question of the estimation of the uncorrelated yield. After a critical analysis of its robustness, we propose in this paper a new technique to build the uncorrelated yield in the charge correlation function. The application of this method to Xe+Sn central collision data at 32, 39, 45 and 50 MeV/u does not show any particular enhancement of the correlation function in any $\Delta Z$ bin.Comment: 23 pages, 9 figures, revised version with an added figure and minor changes. To appear in Nuclear Physics

Evaluation of lung flute in sputum samples for molecular analysis of lung cancer

BACKGROUND: Molecular analysis of sputum provides a promising approach for lung cancer diagnosis, yet is limited by the difficulty in collecting the specimens from individuals who can’t spontaneously expectorate sputum. Lung Flute is a small self-powered audio device that can induce sputum by generating sound waves and vibrating in the airways of the lungs. Here we propose to evaluate the usefulness of Lung Flute for sputum sampling to assist diagnosis of lung cancer. METHODS: Forty-three stage I lung cancer patients and 47 cancer-free individuals who couldn’t spontaneously cough sputum were instructed to use Lung Flute for sputum sampling. Expressions of two microRNAs, miRs-31 and 210, were determined in the specimens by qRT-PCR. The results were compared with sputum cytology. RESULTS: Sputum was easily collected from 39 of 43 (90.7%) lung cancer patients and 42 of 47 (89.4%) controls with volume ranges from 1 to 5 ml (median, 2.6 ml). The specimens had less than 4% oral squamous cells, indicating that sputum was obtained from low respiratory tract. Expressions of miRs-31 and 210 in sputum were considerably higher in cancer patients than cancer-free individuals (8.990 vs. 4.514; 0.6847 vs. 0.3317; all P <0.001). Combined use of the two miRNAs produced a significantly higher sensitivity (61.5% vs. 35.9%, P = 0.002) and a slightly lower specificity (90.5% vs. 95.2%, p = 0.03) compared with cytology for lung cancer diagnosis. CONCLUSION: Lung Flute could potentially be useful in convenient and efficient collection of sputum for molecular diagnosis of lung cancer

Freeze-out volume in multifragmentation - dynamical simulations

Stochastic mean-field simulations for multifragmenting sources at the same excitation energy per nucleon have been performed. The freeze-out volume, a concept which needs to be precisely defined in this dynamical approach, was shown to increase as a function of three parameters: freeze-out instant, fragment multiplicity and system size.Comment: Submitted to Eur. Phys. J. A - march 200

Evidence for Spinodal Decomposition in Nuclear Multifragmentation

Multifragmentation of a ``fused system'' was observed for central collisions between 32 MeV/nucleon 129Xe and natSn. Most of the resulting charged products were well identified thanks to the high performances of the INDRA 4pi array. Experimental higher-order charge correlations for fragments show a weak but non ambiguous enhancement of events with nearly equal-sized fragments. Supported by dynamical calculations in which spinodal decomposition is simulated, this observed enhancement is interpreted as a ``fossil'' signal of spinodal instabilities in finite nuclear systems.Comment: 4 pages, 4 figures, to be published in Phys. Rev. Letter

Primer Acuerdo Nacional de Referentes para la Prevención de las Complicaciones y del Diagnóstico y Tratamiento de la Toxoplasmosis

El presente trabajo es un relato de experiencia de la reunión realizada en la ciudad de Alta Gracia, Córdoba, donde se llevo cabo el “1er Acuerdo Nacional de Referentes para la Prevención de las Complicaciones y del Diagnóstico y Tratamiento de la Toxoplasmosis”. Se discutieron conocimientos validados por la literatura científica como base para propuestas racionales de diagnóstico. Los objetivos del acuerdo fueron: discutir y reflexionar sobre las prácticas y diagnóstico de la Toxoplasmosis en el sistema público nacional, consensuar y proponer un algoritmo de diagnóstico para el sistema público, analizar la brecha entre el nivel de conocimiento y la aplicación de practicas y procedimientos en la población general y en los grupos de riesgo, discutir y proponer actividades destinadas a identificar el riesgo de transmisión vertical con el fin de proponer estrategias de tamizaje adecuados a la prevalencia nacional, proponer actividades para reducir la brecha conocimiento/aplicación de ese conocimiento en un marco de equidad. Los profesionales referentes acordaron la firma del Acta de Alta Gracia que contempla para la red pública de atención médica el diagnóstico de Toxoplasmosis con equidad, calidad, acceso a metodologías complejas, cooperación y asesoría técnica y disponibilidad oportuna de insumos en casos de emergencias jurisdiccionales

Multifragmentation of a very heavy nuclear system (II): bulk properties and spinodal decomposition

The properties of fragments and light charged particles emitted in multifragmentation of single sources formed in central 36AMeV Gd+U collisions are reviewed. Most of the products are isotropically distributed in the reaction c.m. Fragment kinetic energies reveal the onset of radial collective energy. A bulk effect is experimentally evidenced from the similarity of the charge distribution with that from the lighter 32AMeV Xe+Sn system. Spinodal decomposition of finite nuclear matter exhibits the same property in simulated central collisions for the two systems, and appears therefore as a possible mechanism at the origin of multifragmentation in this incident energy domain.Comment: 28 pages including 14 figures; submitted to Nucl. Phys.

Mechanical and chemical spinodal instabilities in finite quantum systems

Self consistent quantum approaches are used to study the instabilities of finite nuclear systems. The frequencies of multipole density fluctuations are determined as a function of dilution and temperature, for several isotopes. The spinodal region of the phase diagrams is determined and it appears that instabilities are reduced by finite size effects. The role of surface and volume instabilities is discussed. It is indicated that the important chemical effects associated with mechanical disruption may lead to isospin fractionation.Comment: 4 pages, 4 figure

Fragment size correlations in finite systems - application to nuclear multifragmentation

We present a new method for the calculation of fragment size correlations in a discrete finite system in which correlations explicitly due to the finite extent of the system are suppressed. To this end, we introduce a combinatorial model, which describes the fragmentation of a finite system as a sequence of independent random emissions of fragments. The sequence is accepted when the sum of the sizes is equal to the total size. The parameters of the model, which may be used to calculate all partition probabilities, are the intrinsic probabilities associated with the fragments. Any fragment size correlation function can be built by calculating the ratio between the partition probabilities in the data sample (resulting from an experiment or from a Monte Carlo simulation) and the 'independent emission' model partition probabilities. This technique is applied to charge correlations introduced by Moretto and collaborators. It is shown that the percolation and the nuclear statistical multifragmentaion model ({\sc smm}) are almost independent emission models whereas the nuclear spinodal decomposition model ({\sc bob}) shows strong correlations corresponding to the break-up of the hot dilute nucleus into nearly equal size fragments