Miscellanea

Miscellane

Matrix Models, Emergent Gravity, and Gauge Theory

Matrix models of Yang-Mills type induce an effective gravity theory on 4-dimensional branes, which are considered as models for dynamical space-time. We review recent progress in the understanding of this emergent gravity. The metric is not fundamental but arises effectively in the semi-classical limit, along with nonabelian gauge fields. This leads to a mechanism for protecting certain geometries from corrections due to the vacuum energy.Comment: 8 pages. Based on invited talks given at the Conferences "Quantum Spacetime and Noncommutative Geometry", Rome, 2008 and at "Workshop on quantum gravity and nocommutative geometry", Lisbon, 2008 and at "Emergent Gravity", Boston, 2008 and at DICE2008, Italy, 2008 and at "QG2 2008 Quantum Geometry and Quantum Gravity", Nottingham, 200

Curvature and Gravity Actions for Matrix Models

We show how gravitational actions, in particular the Einstein-Hilbert action, can be obtained from additional terms in Yang-Mills matrix models. This is consistent with recent results on induced gravitational actions in these matrix models, realizing space-time as 4-dimensional brane solutions. It opens up the possibility for a controlled non-perturbative description of gravity through simple matrix models, with interesting perspectives for the problem of vacuum energy. The relation with UV/IR mixing and non-commutative gauge theory is discussed.Comment: 17 pages; v2+v3: minor correction

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

Motivation: Tandem mass spectrometry (MS/MS) is an indispensable technology for identification of proteins from complex mixtures. Proteins are digested to peptides that are then identified by their fragmentation patterns in the mass spectrometer. Thus, at its core, MS/MS protein identification relies on the relative predictability of peptide fragmentation. Unfortunately, peptide fragmentation is complex and not fully understood, and what is understood is not always exploited by peptide identification algorithms

Schwarzschild Geometry Emerging from Matrix Models

We demonstrate how various geometries can emerge from Yang-Mills type matrix models with branes, and consider the examples of Schwarzschild and Reissner-Nordstroem geometry. We provide an explicit embedding of these branes in R^{2,5} and R^{4,6}, as well as an appropriate Poisson resp. symplectic structure which determines the non-commutativity of space-time. The embedding is asymptotically flat with asymptotically constant \theta^{\mu\nu} for large r, and therefore suitable for a generalization to many-body configurations. This is an illustration of our previous work arXiv:1003.4132, where we have shown how the Einstein-Hilbert action can be realized within such matrix models.Comment: 21 pages, 1 figur